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CHANGELOG.md

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v0.6.0 (Tue Jan 07 2025)

💥 Breaking Changes

  • [MNT] Replaced Cognitive Atlas with SNOMED #397 (@rmanaem)

Authors: 1

v0.5.1 (Mon Dec 16 2024)

📝 Documentation

Authors: 1

v0.5.0 (Mon Dec 16 2024)

🚀 Enhancements

🏠 Internal

Authors: 1

v0.4.3 (Mon Dec 02 2024)

🏠 Internal

  • [REF] Manually verify ID token using PyJWT instead of google_auth #386 (@alyssadai)

Authors: 1

v0.4.2 (Thu Nov 07 2024)

🚀 Enhancements

  • [FIX] Filter for only ImagingSessions or PhenotypicSessions in SPARQL query #375 (@alyssadai)

Authors: 1

v0.4.1 (Tue Oct 29 2024)

🐛 Bug Fixes

  • [FIX] Ensure non-agg API doesn't error out when all matches lack pipeline data #369 (@alyssadai)

🧪 Tests

  • [TST] Remove unneeded env file mount from test docker-compose.yml #366 (@alyssadai)

Authors: 1

v0.4.0 (Thu Oct 24 2024)

💥 Breaking Changes

  • [REF] Split generic /attributes endpoints into attribute-specific routers #358 (@alyssadai)
  • [ENH] Implemented pipeline_version and pipeline_name query fields #345 (@rmanaem)

🚀 Enhancements

  • [ENH] Add /pipelines router & route for fetching available pipeline versions #350 (@alyssadai)
  • [REF] Update README links and simplify Docker Compose instructions #340 (@alyssadai)

🐛 Bug Fixes

  • [FIX] Allow only "true" or None for is_control query parameter #364 (@alyssadai)
  • [FIX] Fixed a typo in filtering pipeline name #351 (@rmanaem)
  • [FIX] Ensure pipeline variables are returned from the graph in an aggregate query #349 (@alyssadai)

🏠 Internal

  • [MNT] Updated default_neurobagel_query #347 (@rmanaem)
  • [MNT] Removed build docker nightly workflow file #342 (@rmanaem)

📝 Documentation

  • [MNT] Update default Neurobagel SPARQL query file and turn into PR checkbox #359 (@alyssadai)

🧪 Tests

Authors: 3

v0.3.1 (Tue Aug 13 2024)

🐛 Bug Fixes

  • [FIX] Ensure subjects without imaging sessions are considered in main query #333 (@alyssadai)

🏠 Internal

  • [CI] Fix reference for DOCKERHUB_REPO in build_docker_on_release.yml #337 (@alyssadai)

Authors: 1

v0.3.1 (Tue Aug 13 2024)

🐛 Bug Fixes

  • [FIX] Ensure subjects without imaging sessions are considered in main query #333 (@alyssadai)

🏠 Internal

Authors: 1

v0.3.1 (Tue Aug 13 2024)

🐛 Bug Fixes

  • [FIX] Ensure subjects without imaging sessions are considered in main query #333 (@alyssadai)

Authors: 1

v0.3.0 (Fri Aug 02 2024)

💥 Breaking Changes

  • [FIX] Disable redirect slashes globally and remove trailing / from /query #328 (@alyssadai)
  • [ENH] Add authentication to /query route #323 (@alyssadai)

🐛 Bug Fixes

  • [FIX] Exclude sessions missing a queried property from matches #326 (@alyssadai)

Authors: 1

v0.2.1 (Tue Apr 16 2024)

🐛 Bug Fixes

  • [FIX] Address performance issues in SPARQL query #308 (@surchs)
  • [FIX] Disable timeout for request to graph #305 (@alyssadai)

Authors: 2

v0.2.0 (Thu Apr 11 2024)

🎉 This release contains work from a new contributor! 🎉

Thank you, Abdul Samad Siddiqui (@samadpls), for all your work!

Release Notes

[MNT] Release new data model (#300)

We have updated the Neurobagel data model to allow users to specify phenotypic information at the session level (neurobagel/planning#83). This release updates the node API so it can understand the new graph data.

💥 Breaking Changes

  • [REF] Make session count names clearer in query response #282 (@alyssadai)
  • [ENH] Support queries of session-level phenotypic attributes #264 (@alyssadai)

🚀 Enhancements

  • [ENH] Added root endpoint with welcome message and API docs link #286 (@samadpls)
  • [MNT] Release new data model #300 (@surchs)
  • Delete .github/workflows/add_pr2project.yml #244 (@surchs)

📝 Documentation

  • [DOC] Added warning about quoting in .env file for Docker commands #284 (@samadpls)
  • [DOC] Add sample default SPARQL query to repo #277 (@alyssadai)

🧪 Tests

🔩 Dependency Updates

  • Bumped fastapi, starlette, and typing_extensions #295 (@rmanaem)

Authors: 4