Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update QIIME2 version #33

Open
kshen3778 opened this issue Jun 2, 2023 · 1 comment
Open

Update QIIME2 version #33

kshen3778 opened this issue Jun 2, 2023 · 1 comment
Labels
enhancement New feature or request

Comments

@kshen3778
Copy link
Collaborator

kshen3778 commented Jun 2, 2023

Currently, we use QIIME 2020.2 in AXIOME. We can update to the latest version of QIIME2.
QIIME2 installation via docker: https://quay.io/repository/qiime2/core?tab=tags&tag=2023.5
Docker images: https://quay.io/repository/qiime2/core?tab=tags

Since some people in the lab are still using old QIIME version, it might make sense to spin up two AXIOME deployments: one old (2020.2) and one new.

production old = port 8080
production new = port 8082
test = port 8081
We may need to set the RUN_ENV in docker compose yaml based on port number instead of "test" or "official"

@kshen3778 kshen3778 added the enhancement New feature or request label Jun 2, 2023
@kshen3778
Copy link
Collaborator Author

Celery breaks with newer version of QIIME past 2020.6

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant