aq-count-n.1

.\" Authors: Andre Masella
.TH aq-count-n 1 "October 2011" "1.2" "USER COMMANDS"
.SH NAME 
aq-count-n \- Count Ns in a FASTQ read
.SH SYNOPSIS
.B aq-count-n
[
.B \-j
] 
.B \-f 
.I file.fastq
.SH DESCRIPTION
Examine a FASTQ file and produce a histogram of the number of uncalled bases (Ns) in a sequence.
.SH OPTIONS
.TP
\-f
The FASTQ file to be examined.
.TP
\-j
The input file is compressed with
.BR bzip (1).
.SH SEE ALSO
.BR axiome (1).