Sample processing time

[zonzero]

Hello! Thank you for the great software, but know I meet a problem. The RepEnrich2.py has been running almost 100h, but I only input 1
14G sample. I don't know if I do something wrong? Here is code:
python RepEnrich2.py hg38_repeatmasker.txt Sample_output_forder P4_B8_BI Setup_forder_hg38 multimap_R1.fastq --fastqfile2 multimap_R2.fastq unique.bam --cpus 20 --pairedend TRUE
And now it still keep running "Processing repeat psuedogenomes" step. It's been 100 hours
May be I did something wrong……?