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MissingDataError: ERROR: Cannot read metadata: #274

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aliciapm7 opened this issue May 31, 2024 · 3 comments
Open

MissingDataError: ERROR: Cannot read metadata: #274

aliciapm7 opened this issue May 31, 2024 · 3 comments

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@aliciapm7
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Hi. Hope you're all ok.

I'm using treetime on google colaboratory and installed just like the tutorial. I've tried de .tsv and .csv file but it ends the same way everytime:
"MissingDataError: ERROR: Cannot read metadata: need at least one column that contains the taxon labels. Looking for the first column that contains 'name', 'strain', or 'accession' in the header"

thats the code i'm using (python 3): !treetime --tree /content/arvore.txt --aln /content/genomacompleto.fas --dates /content/Nomedata1OK.csv

here is an exemple of my .tsv file's header
image

and my .csv
image

Please, someone help me. I don't know what to do anymore

@rneher
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rneher commented Aug 11, 2024

this should work Any chance you can provide the input files to investigate?

@aliciapm7
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aliciapm7 commented Aug 11, 2024 via email

@rneher
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rneher commented Sep 16, 2024

I think the sharing link you provided is tied to your email. I can't access the files.

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