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Converting domtblout file to a tblout file #4

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sanyalab opened this issue Aug 17, 2022 · 2 comments
Open

Converting domtblout file to a tblout file #4

sanyalab opened this issue Aug 17, 2022 · 2 comments

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@sanyalab
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Hi Eric,

I was wondering if you had an easy way to convert a domtblout file to a tblout file. I ran hmmscan with domtblout as the output option, but I actually needed the tblout option for some downstream processes. How can I convert the format? OR... do I need to run the Pfam search again with tblout option.

Thanks
Abhijit

@nawrockie
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@sanyalab : I don't have an easy way of doing that. You may want to rerun your searches, or you may be able to convert it depending on which fields from the --tblout file you need. See pages 67 to 72 of the hmmer user's guide for a description of the fields in the tblout and domtblout files. It looks like there are some fields in the tblout file that are not in the domtblout file: http://eddylab.org/software/hmmer/Userguide.pdf

@sanyalab
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Hi Eric,

Thanks for replying. I'll just rerun it then. Simpler solution. Btw can we get both outputs from a single hmmer run Or are these formats mutually exclusive

Thanks
Abhijit

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