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Correlated PEER factors #17

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epigenomics22 opened this issue Mar 21, 2022 · 1 comment
Open

Correlated PEER factors #17

epigenomics22 opened this issue Mar 21, 2022 · 1 comment

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@epigenomics22
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I have a voom normalized matrix of 3863 genes and 192 individuals. I ran PEER at n=50. I see PEER factors are all independent until n=35. After that pair-wise correlation of PEER factors are highly correlated. Could you please explain me in what conditions it can happen?
@jingydz
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jingydz commented May 18, 2023

I have a voom normalized matrix of 3863 genes and 192 individuals. I ran PEER at n=50. I see PEER factors are all independent until n=35. After that pair-wise correlation of PEER factors are highly correlated. Could you please explain me in what conditions it can happen?

May I ask how you successfully installed the Peer software?

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@jingydz @epigenomics22