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derivephys.pro
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derivephys.pro
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;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;DERIVE PHYSICAL QUANTITIES;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;
function f_getdvar,var ;Note: input must be positive and real
COMMON numbers
nvar=n_elements(var)
dvar=dblarr(nvar)
for i=0L,nvar-1 do begin
if i eq 0 then dvar(i)=min([2.*var(i),var(i+1)-var(i)]) ;make sure that var-0.5*dvar cannot be negative
if i eq nvar-1 then dvar(i)=var(i)-var(i-1)
if i gt 0 and i lt nvar-1 then dvar(i)=.5*(var(i+1)-var(i-1))
if dvar(i) lt tiny then dvar(i)=tiny
if dvar(i) gt huge then dvar(i)=huge
endfor
return,dvar
end
function f_createpdf,array,darray,cumpdf,nnew
COMMON numbers
norig0=n_elements(array) ;originial number of elements
medval=median(array)
use=where(array gt medval/dynrange and array lt medval*dynrange) ;limit dynamic range to 1e10 both ways, thus excluding zero and infinity
array=array[use] ;update array
darray=darray[use] ;update difference array
norig=n_elements(array) ;new number of elements
cumpdf=cumpdf[use]*norig0/norig ;update cumulative pdf and rescale to unity
if darray(0) lt tiny then usedmin=darray(min(where(darray gt tiny))) else usedmin=darray(0)
minval=min(array)-.5*usedmin ;assume linearly-symmetric bins as input
if darray(norig-1) gt huge then usedmax=darray(max(where(darray lt huge))) else usedmax=darray(norig-1)
maxval=max(array)+.5*usedmax ;assume linearly-symmetric bins as input
pdf=dblarr(nnew)
if minval le 0. then logrange=0 else logrange=1
if minval ne maxval then begin
if logrange then begin
newarray=minval*(maxval/minval)^((dindgen(nnew)+.5)/nnew)
left=newarray*(maxval/minval)^(-1./(2.*nnew)) ;left bin edge
right=newarray*(maxval/minval)^(1./(2.*nnew)) ;right bin edge
newdarray=right-left
if max(newdarray) eq 0 then logrange=0
endif
if ~logrange then begin
newarray=minval+(maxval-minval)*((dindgen(nnew)+.5)/nnew)
left=newarray-(maxval-minval)/(2.*nnew) ;left bin edge
right=newarray+(maxval-minval)/(2.*nnew) ;right bin edge
newdarray=0.*left+(maxval-minval)/nnew
endif
minlimit=min(where(array gt min(array),nmin))
maxlimit=max(where(array lt max(array),nmax))
if nmin eq 0 then interpolmin=0 else interpolmin=minlimit ;avoid interpolation over saturated maximum values (crashes interpol function) and just include number once
if nmax eq 0 then interpolmax=n_elements(cumpdf)-1 else interpolmax=maxlimit ;avoid interpolation over saturated maximum values (crashes interpol function) and just include number once
interpolarr=[0,findgen(interpolmax-interpolmin+1)+interpolmin] ;index array for interpolation
if interpolmax lt n_elements(cumpdf)-1 then interpolarr=[interpolarr,n_elements(cumpdf)-1] ;update index array for interpolation
for i=0L,nnew-1 do begin
if left(i) le min(array) then cumpdfleft=max([0.,interpol(cumpdf(interpolarr),array(interpolarr),left(i))]) ;left cumpdf value
if left(i) gt max(array) then cumpdfleft=1. ;by definition
if left(i) gt min(array) && left(i) le max(array) then cumpdfleft=interpol(cumpdf,array,left(i)) ;left cumpdf value
if left(i) eq max(array) then cumpdfleft=min([interpol(cumpdf(interpolarr),array(interpolarr),left(i)),1.]) ;left cumpdf value
if right(i) lt min(array) then cumpdfright=0. ;by definition
if right(i) ge max(array) then cumpdfright=min([interpol(cumpdf(interpolarr),array(interpolarr),right(i)),1.]) ;right cumpdf value
if right(i) lt max(array) && right(i) ge min(array) then cumpdfright=interpol(cumpdf,array,right(i)) ;right cumpdf value
pdf(i)=(cumpdfright-cumpdfleft)/newdarray(i) ;pdf value in bin
endfor
endif else begin
newarray=dblarr(nnew)
newdarray=dblarr(nnew)+tiny
for i=0L,nnew-1 do newarray(i)=array(0)+(i-nnew)/2*tiny
pdf(*)=(nnew*tiny)^(-1.)
endelse
if min(pdf) lt 0. then pdf(where(pdf lt 0.))=0.
if finite(total(pdf)) eq 0 then stop
return,[[newarray],[newdarray],[pdf]]
end
function f_writecorr,matrix,complete,galaxy,outputdir
openw,lun,outputdir+galaxy+'_correlation_matrix.dat',/get_lun
printf,lun,'# 2D correlation coefficient matrix between all constrained quantities for run '+galaxy+', generated with the Kruijssen & Longmore (2014) uncertainty principle code'
printf,lun,'# IMPORTANT: see Paper II (Kruijssen et al. 2018) for details on how this matrix was calculated'
printf,lun,'# This symmetric array lists the correlation coefficients for quantities that are, from left to right AND from top to bottom, in the order:'
if complete then begin
printf,lun,'# tgas, tover, lambda, tstar, ttotal, betastar, betagas, surfglobalstar, surfglobalgas, surfconstar, surfcongas, rpeakstar, rpeakgas, zetastar, zetagas, vfb, vfbr, surfsfr, surfgas, tdepl, esf, mdotsf, mdotfb, etainst, etaavg, pzero, chie, chier, chip, chipr, fcl, fgmc'
endif else begin
printf,lun,'# tgas, tover, lambda, tstar, ttotal, betastar, betagas, surfglobalstar, surfglobalgas, surfconstar, surfcongas, rpeakstar, rpeakgas, zetastar, zetagas, vfb, vfbr, fcl, fgmc'
endelse
printf,lun,''
n=n_elements(matrix(0,*))
nstr=f_string(n-1,0)
for i=0L,n-1 do begin
printf,lun,format='(f12.5,'+nstr+'(3x,f12.5))',reform(matrix(i,*))
endfor
close,lun
free_lun,lun
report=' 2D correlation coefficient matrix written'
return,report
end
function f_writecov,matrix,complete,galaxy,outputdir
openw,lun,outputdir+galaxy+'_covariance_matrix.dat',/get_lun
printf,lun,'# 2D covariance matrix between all constrained quantities for run '+galaxy+', generated with the Kruijssen & Longmore (2014) uncertainty principle code'
printf,lun,'# IMPORTANT: see Paper II (Kruijssen et al. 2018) for details on how this matrix was calculated'
printf,lun,'# This symmetric array lists the covariances for quantities that are, from left to right AND from top to bottom, in the order:'
if complete then begin
printf,lun,'# tgas, tover, lambda, tstar, ttotal, betastar, betagas, surfglobalstar, surfglobalgas, surfconstar, surfcongas, rpeakstar, rpeakgas, zetastar, zetagas, vfb, vfbr, surfsfr, surfgas, tdepl, esf, mdotsf, mdotfb, etainst, etaavg, pzero, chie, chier, chip, chipr, fcl, fgmc'
endif else begin
printf,lun,'# tgas, tover, lambda, tstar, ttotal, betastar, betagas, surfglobalstar, surfglobalgas, surfconstar, surfcongas, rpeakstar, rpeakgas, zetastar, zetagas, vfb, vfbr, fcl, fgmc'
endelse
printf,lun,''
n=n_elements(matrix(0,*))
nstr=f_string(n-1,0)
for i=0L,n-1 do begin
printf,lun,format='(f12.5,'+nstr+'(3x,f12.5))',reform(matrix(i,*))
endfor
close,lun
free_lun,lun
report=' 2D covariance matrix written'
return,report
end
function derivephys,surfsfr,surfsfr_err,surfgas,surfgas_err,area,tgas,tover,lambda,beta_star,beta_gas,fstarover,fgasover,fcl,fgmc,tstariso,tstariso_rerrmin,tstariso_rerrmax,tstar_incl, $
surfglobals,surfglobalg,surfcontrasts,surfcontrastg,apertures_star,apertures_gas,psie,psip,peak_prof,ntry,nphysmc,galaxy,outputdir,arrdir,figdir,map_units, $
emfrac_cor_mode, filter_choice, filter_len_conv, $
rpeak_cor_mode, rpeaks_cor_val, rpeaks_cor_emin, rpeaks_cor_emax, rpeakg_cor_val, rpeakg_cor_emin, rpeakg_cor_emax, $
star_peakid_file, gas_peakid_file, mask_arr ; filenames for clumpfind peak files
if map_units eq 1 then complete=1 else complete=0
;derived quantities for best-fitting model
if tstar_incl eq 0 then tstar=tstariso+tover else tstar=tstariso
ttotal=tgas+tstar-tover
betastar=interpol(beta_star,fstarover,tover/tstar)
betagas=interpol(beta_gas,fgasover,tover/tgas)
surfglobals_fit=10.^interpol(alog10(surfglobals),alog10(apertures_star),alog10(lambda))
surfglobalg_fit=10.^interpol(alog10(surfglobalg),alog10(apertures_gas),alog10(lambda))
surfs_fit=10.^interpol(alog10(surfcontrasts),alog10(apertures_star),alog10(lambda))
surfg_fit=10.^interpol(alog10(surfcontrastg),alog10(apertures_gas),alog10(lambda))
zetastar=f_zeta(surfs_fit,ttotal,tstar,peak_prof)
zetagas=f_zeta(surfg_fit,ttotal,tgas,peak_prof)
rpeakstar=f_rpeak(zetastar,lambda)
rpeakgas=f_rpeak(zetagas,lambda)
vfb=f_vfb(tover,lambda)
vfbr=f_vfbr(tover,rpeakgas)
; calculate eta(star/gas) for error calculation regardless of whether it is needed for the calculation of qzeta - it is always needed for error calculations
if rpeak_cor_mode eq 0 then begin ; use measured rpeak value
etastar = sqrt(tstar/ttotal) * zetastar ; zeta corrected for timeline. i.e. peak density in image
etagas = sqrt(tgas/ttotal) * zetagas ; zeta corrected for timeline. i.e. peak density in image
endif else if rpeak_cor_mode eq 1 then begin ; use supplied rpeak value
etastar = (sqrt(tstar/ttotal) * 2.0* (rpeaks_cor_val/lambda))
etagas = (sqrt(tgas/ttotal) * 2.0* (rpeakg_cor_val/lambda))
endif
if emfrac_cor_mode eq 1 || emfrac_cor_mode eq 3 || emfrac_cor_mode eq 5 then begin
cut_len_temp = filter_len_conv * lambda
if rpeak_cor_mode eq 0 then begin ; use measured rpeak value
fwhm_star_temp = rpeakstar * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
fwhm_gas_temp = rpeakgas * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
endif else if rpeak_cor_mode eq 1 then begin ; use supplied rpeak value
fwhm_star_temp = rpeaks_cor_val * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
fwhm_gas_temp = rpeakg_cor_val * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
endif
qconstar = fourier_flux_loss_correction(filter_choice, cut_len_temp/fwhm_star_temp)
qcongas = fourier_flux_loss_correction(filter_choice, cut_len_temp/fwhm_gas_temp)
fcl /= qconstar ; flux loss correction
fgmc /= qcongas ; flux loss correction
endif else begin
qconstar = 1.0d0
qcongas = 1.0d0
endelse
if emfrac_cor_mode eq 2 || emfrac_cor_mode eq 3 then begin
print, 'WARNING: corrections for the flux loss due to overlap based on zeta are depreciated switch to emfrac_cor_mode = 4 or 5'
qzetastar = fourier_zeta_correction(filter_choice, etastar)
qzetagas = fourier_zeta_correction(filter_choice, etagas)
fcl /= qzetastar ; zeta correction
fgmc /= qzetagas ; zeta correction
endif else if emfrac_cor_mode eq 4 || emfrac_cor_mode eq 5 then begin
qzetastar = fourier_overlap_correction(filter_choice, star_peakid_file, qover_sigma = qzetastar_sigma, mask_arr = mask_arr) ; currently this is not recalculated
qzetagas = fourier_overlap_correction(filter_choice, gas_peakid_file, qover_sigma = qzetagas_sigma, mask_arr = mask_arr) ; currently this is not recalculated
fcl /= qzetastar ; overlap correction
fgmc /= qzetagas ; overlap correction
endif else begin
qzetastar = 1.0d0
qzetagas = 1.0d0
endelse
if complete then begin
tdepl=surfgas/surfsfr/1.d9
esf=f_esf(tgas,tdepl,fcl,fgmc)
mdotsf=f_mdotsf(tgas,lambda,surfgas*surfglobalg_fit,fgmc,esf)
mdotfb=f_mdotfb(tover,lambda,surfgas*surfglobalg_fit,fgmc,esf)
etainst=f_etainst(tgas,tover,esf)
etaavg=f_etaavg(esf)
pzero = f_pzero(vfbr, etaavg)
chie=f_chie(tover,esf,vfb,psie)
chier=f_chier(tover,esf,vfbr,psie)
chip=f_chip(tover,esf,vfb,psip)
chipr=f_chipr(tover,esf,vfbr,psip)
endif
restore,filename=arrdir+'probnorm.sav'
restore,filename=arrdir+'probtgastover.sav'
restore,filename=arrdir+'probtgas.sav'
restore,filename=arrdir+'tgasarr.sav'
restore,filename=arrdir+'toverarr.sav'
restore,filename=arrdir+'lambdaarr.sav'
restore,filename=arrdir+'dtgas.sav'
restore,filename=arrdir+'dtover.sav'
restore,filename=arrdir+'dtlambda.sav'
; diffuse fraction
restore,filename=arrdir+'fclarr.sav'
restore,filename=arrdir+'fgmcarr.sav' ; ; add
;get cumulative PDF for use as 1D generation function
probtgascum=total(probtgas*dtgas,/cumulative)
;create Monte Carlo arrays
tgasmc=dblarr(nphysmc)
tovermc=dblarr(nphysmc)
lambdamc=dblarr(nphysmc)
tstarisomc=dblarr(nphysmc)
if complete then begin
surfsfrmc=dblarr(nphysmc)
surfgasmc=dblarr(nphysmc)
endif
tstarmc=dblarr(nphysmc)+tstar
ttotalmc=dblarr(nphysmc)+ttotal
betastarmc=dblarr(nphysmc)+betastar
betagasmc=dblarr(nphysmc)+betagas
surfglobalsmc=dblarr(nphysmc)+surfglobals_fit
surfglobalgmc=dblarr(nphysmc)+surfglobalg_fit
surfsmc=dblarr(nphysmc)+surfs_fit
surfgmc=dblarr(nphysmc)+surfg_fit
zetastarmc=dblarr(nphysmc)+zetastar
zetagasmc=dblarr(nphysmc)+zetagas
rpeakstarmc=dblarr(nphysmc)+rpeakstar
rpeakgasmc=dblarr(nphysmc)+rpeakgas
vfbmc=dblarr(nphysmc)+vfb
vfbrmc=dblarr(nphysmc)+vfbr
if complete then begin
tdeplmc=dblarr(nphysmc)+tdepl
esfmc=dblarr(nphysmc)+esf
mdotsfmc=dblarr(nphysmc)+mdotsf
mdotfbmc=dblarr(nphysmc)+mdotfb
etainstmc=dblarr(nphysmc)+etainst
etaavgmc=dblarr(nphysmc)+etaavg
pzeromc = dblarr(nphysmc)+pzero
chiemc=dblarr(nphysmc)+chie
chiermc=dblarr(nphysmc)+chier
chipmc=dblarr(nphysmc)+chip
chiprmc=dblarr(nphysmc)+chipr
endif
; diffuse fraction
fclmc=dblarr(nphysmc)+fcl ; monte-carlo array for fcl
fgmcmc=dblarr(nphysmc)+fgmc ; monte-carlo array for fgmc
; diffuse fraction corrections
if rpeak_cor_mode eq 1 then begin
rpeakscormc=dblarr(nphysmc)
rpeakgcormc=dblarr(nphysmc)
endif
qconstarmc = dblarr(nphysmc)
qcongasmc = dblarr(nphysmc)
etastarmc = dblarr(nphysmc)
etagasmc = dblarr(nphysmc)
qzetastarmc = dblarr(nphysmc)
qzetagasmc = dblarr(nphysmc)
nredo=0
; nredomax=floor(nphysmc/3.)
; *** NOTE: increase nredomax to compensate for increased parameter list
nredomax=floor(nphysmc*10.)
nrand_gauss_factor = 3 ; for tstariso, surfsfr and surfgas
if rpeak_cor_mode eq 1 then nrand_gauss_factor += 2 ; for rpeakscor, rpeakgcor
if emfrac_cor_mode eq 4 || emfrac_cor_mode eq 5 then nrand_gauss_factor += 2 ; for qzetastar, qzetagas
nrnd=3*(nphysmc+nredomax) ; 3 = for tgas, tover and lambda
nrnd_gauss = nrand_gauss_factor*(nphysmc+nredomax)
randomarr=randomu(systime(1),nrnd)
gaussarr=randomn(systime(1),nrnd_gauss)
irnd=long(0)
igauss=long(0)
tstariso_rerr=0.5*(tstariso_rerrmin+tstariso_rerrmax)
if rpeak_cor_mode eq 1 then begin
rpeaks_cor_remin = rpeaks_cor_emin / rpeaks_cor_val
rpeaks_cor_remax = rpeaks_cor_emax / rpeaks_cor_val
rpeakscor_rerr=0.5*(rpeaks_cor_remin+rpeaks_cor_remax)
rpeakg_cor_remin = rpeakg_cor_emin / rpeakg_cor_val
rpeakg_cor_remax = rpeakg_cor_emax / rpeakg_cor_val
rpeakgcor_rerr=0.5*(rpeakg_cor_remin+rpeakg_cor_remax)
endif
for i=0L,nphysmc-1 do begin ;do Monte Carlo error propagation
redo=0
tstarisomc(i)=tstariso+gaussarr(igauss)*tstariso_rerr*tstariso
xi=tstarisomc(i)/tstariso
igauss+=1
tgasmc(i)=10.^interpol(alog10(tgasarr),probtgascum,randomarr(irnd))*xi
i1=max(where(tgasarr le tgasmc(i),ct))
if ct eq 0 then i1=0
if i1 eq ntry-1 then i1=ntry-2
i2=i1+1
frac12=alog10(tgasmc(i)/tgasarr(i1))/alog10(tgasarr(i2)/tgasarr(i1))
probtovertemp=probtgastover(i1,*)+frac12*(probtgastover(i2,*)-probtgastover(i1,*))
probtovercumtemp=total(probtovertemp*dtover,/cumulative)
probtovercumtemp=probtovercumtemp/max(probtovercumtemp)
irnd+=1
tovermc(i)=10.^interpol(alog10(toverarr),probtovercumtemp,randomarr(irnd))*xi
i3=max(where(toverarr le tovermc(i),ct))
if ct eq 0 then i3=0
if i3 eq ntry-1 then i3=ntry-2
i4=i3+1
frac34=alog10(tovermc(i)/toverarr(i3))/alog10(toverarr(i4)/toverarr(i3))
problambdatemp1=probnorm(i1,i3,*)+frac34*(probnorm(i1,i4,*)-probnorm(i1,i3,*))
problambdatemp2=probnorm(i2,i3,*)+frac34*(probnorm(i2,i4,*)-probnorm(i2,i3,*))
problambdatemp=problambdatemp1+frac12*(problambdatemp2-problambdatemp1)
problambdacumtemp=total(problambdatemp*dlambda,/cumulative)
problambdacumtemp=problambdacumtemp/max(problambdacumtemp)
if pdf_form_check(problambdacumtemp) ne 1 || pdf_form_check(probtovercumtemp) ne 1 then redo = 1 ; check for problematic pdfs that lead to spurious results
irnd+=1
lambdamc(i)=10.^interpol(alog10(lambdaarr),problambdacumtemp,randomarr(irnd))
irnd+=1
if complete then begin
surfsfrmc(i)=10.^(alog10(surfsfr)+gaussarr(igauss)*surfsfr_err/surfsfr/alog(10.))
igauss+=1
surfgasmc(i)=10.^(alog10(surfgas)+gaussarr(igauss)*surfgas_err/surfgas/alog(10.))
igauss+=1
endif
if tstar_incl eq 0 then tstarmc(i)=tstariso*xi+tovermc(i) else tstarmc(i)=tstariso*xi
ttotalmc(i)=tgasmc(i)+tstarmc(i)-tovermc(i)
betastarmc(i)=interpol(beta_star,fstarover,tovermc(i)/tstarmc(i))
betagasmc(i)=interpol(beta_gas,fgasover,tovermc(i)/tgasmc(i))
surfglobalsmc(i)=10.^interpol(alog10(surfglobals),alog10(apertures_star),alog10(lambdamc(i)))
surfglobalgmc(i)=10.^interpol(alog10(surfglobalg),alog10(apertures_gas),alog10(lambdamc(i)))
surfsmc(i)=10.^interpol(alog10(surfcontrasts),alog10(apertures_star),alog10(lambdamc(i)))
surfgmc(i)=10.^interpol(alog10(surfcontrastg),alog10(apertures_gas),alog10(lambdamc(i)))
zetastarmc(i)=f_zeta(surfsmc(i),ttotalmc(i),tstarmc(i),peak_prof)
zetagasmc(i)=f_zeta(surfgmc(i),ttotalmc(i),tgasmc(i),peak_prof)
rpeakstarmc(i)=f_rpeak(zetastarmc(i),lambdamc(i))
rpeakgasmc(i)=f_rpeak(zetagasmc(i),lambdamc(i))
vfbmc(i)=f_vfb(tovermc(i),lambdamc(i))
vfbrmc(i)=f_vfbr(tovermc(i),rpeakgasmc(i))
if min(finite([tstarisomc(i),tgasmc(i),tovermc(i),lambdamc(i),tstarmc(i),ttotalmc(i),betastarmc(i),betagasmc(i),rpeakstarmc(i),rpeakgasmc(i),zetastarmc(i),zetagasmc(i),vfbmc(i),vfbrmc(i)])) eq 0 then redo=1
if complete then begin
tdeplmc(i)=surfgasmc(i)/surfsfrmc(i)/1.d9
esfmc(i)=f_esf(tgasmc(i),tdeplmc(i),fcl,fgmc)
mdotsfmc(i)=f_mdotsf(tgasmc(i),lambda,surfgasmc(i)*surfglobalgmc(i),fgmc,esfmc(i))
mdotfbmc(i)=f_mdotfb(tovermc(i),lambda,surfgasmc(i)*surfglobalgmc(i),fgmc,esfmc(i))
etainstmc(i)=f_etainst(tgasmc(i),tovermc(i),esfmc(i))
etaavgmc(i)=f_etaavg(esfmc(i))
pzeromc(i)=f_pzero(vfbrmc[i],etaavgmc[i])
chiemc(i)=f_chie(tovermc(i),esfmc(i),vfbmc(i),psie)
chiermc(i)=f_chier(tovermc(i),esfmc(i),vfbrmc(i),psie)
chipmc(i)=f_chip(tovermc(i),esfmc(i),vfbmc(i),psip)
chiprmc(i)=f_chipr(tovermc(i),esfmc(i),vfbrmc(i),psip)
if min(finite([surfsfrmc(i),surfgasmc(i),tdeplmc(i),esfmc(i),mdotsfmc(i),mdotfbmc(i),etainstmc(i),etaavgmc(i),pzeromc[i],chiemc(i),chiermc(i),chipmc(i),chiprmc(i)])) eq 0 then redo=1
endif
; diffuse fraction
fclmc[i]=10.^interpol(alog10(star_flux_frac_arr),alog10(lambdaarr),alog10(lambdamc[i])) ; logspace interpolation
fgmcmc[i]=10.^interpol(alog10(gas_flux_frac_arr),alog10(lambdaarr),alog10(lambdamc[i]))
if rpeak_cor_mode eq 1 then begin
rpeakscormc[i]=rpeaks_cor_val+gaussarr(igauss)*rpeakscor_rerr*rpeaks_cor_val
igauss+=1
rpeakgcormc[i]=rpeakg_cor_val+gaussarr(igauss)*rpeakgcor_rerr*rpeakg_cor_val
igauss+=1
endif
; calculate eta(star/gas)mc regardless of whether it is needed to calculate qzeta(star/gas)mc - it is always needed for error calculations
if rpeak_cor_mode eq 0 then begin ; use measured rpeak value
etastarmc[i] = sqrt(tstarmc[i]/ttotalmc[i]) * zetastarmc[i] ; corrected zeta for timeline
etagasmc[i] = sqrt(tgasmc[i]/ttotalmc [i]) * zetagasmc[i]
endif else if rpeak_cor_mode eq 1 then begin ; use supplied rpeak value
etastarmc[i] = (sqrt(tstarmc[i]/ttotalmc[i]) * 2.0 * (rpeakstarmc[i]/lambdamc[i]) ) ; eta with correction for flux loss from signal regions
etagasmc[i] = (sqrt(tgasmc[i]/ttotalmc[i]) * 2.0 * (rpeakgasmc[i]/lambdamc[i])) ; eta with correction for flux loss from signal regions
endif
if emfrac_cor_mode eq 1 || emfrac_cor_mode eq 3 || emfrac_cor_mode eq 5 then begin
cut_len_temp = filter_len_conv * lambdamc[i]
if rpeak_cor_mode eq 0 then begin ; use measured rpeak value
fwhm_star_temp = rpeakstarmc[i] * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
fwhm_gas_temp = rpeakgasmc[i] * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
endif else if rpeak_cor_mode eq 1 then begin ; use supplied rpeak value
fwhm_star_temp = rpeakscormc[i] * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
fwhm_gas_temp = rpeakgcormc[i] * (2.0d0 *sqrt(2.0d0 * alog(2.0d0)) )
endif
qconstarmc[i] = fourier_flux_loss_correction(filter_choice, cut_len_temp/fwhm_star_temp)
qcongasmc[i] = fourier_flux_loss_correction(filter_choice, cut_len_temp/fwhm_gas_temp)
fclmc[i] /= qconstarmc[i] ; flux loss correction
fgmcmc[i] /= qcongasmc[i] ; flux loss correction
endif else begin
qconstarmc[i] = 1.0d0
qcongasmc[i] = 1.0d0
endelse
if emfrac_cor_mode eq 2 || emfrac_cor_mode eq 3 then begin
qzetastarmc[i] = fourier_zeta_correction(filter_choice, etastarmc[i])
qzetagasmc[i] = fourier_zeta_correction(filter_choice, etagasmc[i])
fclmc[i] /= qzetastarmc[i] ; zeta correction
fgmcmc[i] /= qzetagasmc[i] ; zeta correction
endif else if emfrac_cor_mode eq 4 || emfrac_cor_mode eq 5 then begin
qzetastarmc[i] = qzetastar + (gaussarr[igauss] * qzetastar_sigma)
igauss+=1
qzetagasmc[i] = qzetagas + (gaussarr[igauss] * qzetagas_sigma)
igauss+=1
fclmc[i] /= qzetastarmc[i] ; overlap correction
fgmcmc[i] /= qzetagasmc[i] ; overlap correction
endif else begin
qzetastarmc[i] = 1.0d0
qzetagasmc[i] = 1.0d0
endelse
if min(finite([fclmc[i], fgmcmc[i], qconstarmc[i], qcongasmc[i], etastarmc[i], etagasmc[i], qzetastarmc[i], qzetagasmc[i] ])) eq 0 then redo=1
if redo eq 1 then begin ;if any Infinity or NaN has been found, redo draw
i=i-1
nredo+=1
if nredo eq nredomax then f_error,['too many Infinity or NaN values encountered in Monte-Carlo error propagation','chi^2 landscape is too sparsely sampled to converge, please verify quality of best fit']
endif
progress,' ==> derived quantity error propagation progress',i,nphysmc-1
endfor
if complete then begin
quantmc=[[tgasmc],[tovermc],[lambdamc], $
[tstarmc],[ttotalmc],[betastarmc],[betagasmc], $
[surfglobalsmc],[surfglobalgmc],[surfsmc],[surfgmc],[rpeakstarmc],[rpeakgasmc],[zetastarmc],[zetagasmc],[vfbmc],[vfbrmc], $
[surfsfrmc],[surfgasmc],[tdeplmc],[esfmc],[mdotsfmc],[mdotfbmc],[etainstmc],[etaavgmc],[pzeromc],[chiemc],[chiermc],[chipmc],[chiprmc], $
[fclmc],[fgmcmc],[qconstarmc],[qcongasmc],[etastarmc],[etagasmc],[qzetastarmc],[qzetagasmc]]
endif else begin
quantmc=[[tgasmc],[tovermc],[lambdamc], $
[tstarmc],[ttotalmc],[betastarmc],[betagasmc], $
[surfglobalsmc],[surfglobalgmc],[surfsmc],[surfgmc],[rpeakstarmc],[rpeakgasmc],[zetastarmc],[zetagasmc],[vfbmc],[vfbrmc], $
[fclmc],[fgmcmc],[qconstarmc],[qcongasmc],[etastarmc],[etagasmc],[qzetastarmc],[qzetagasmc]]
endelse
nquant=n_elements(quantmc(0,*))
corrquant=dblarr(nquant,nquant)
covquant=dblarr(nquant,nquant)
for i=0L,nquant-1 do begin
for j=0L,nquant-1 do begin
corrquant(i,j)=correlate(quantmc(*,i),quantmc(*,j))
covquant(i,j)=correlate(quantmc(*,i),quantmc(*,j),/covariance)
endfor
progress,' ==> correlation and covariance matrix progress',i,nquant-1
endfor
report=f_writecorr(corrquant,complete,galaxy,outputdir)
report=f_writecov(covquant,complete,galaxy,outputdir)
;sort all arrays
tgasmc=tgasmc(sort(tgasmc))
dtgasmc=f_getdvar(tgasmc)
tovermc=tovermc(sort(tovermc))
dtovermc=f_getdvar(tovermc)
lambdamc=lambdamc(sort(lambdamc))
tstarisomc=tstarisomc(sort(tstarisomc))
if complete then begin
surfsfrmc=surfsfrmc(sort(surfsfrmc))
surfgasmc=surfgasmc(sort(surfgasmc))
endif
print,' ==> calculating derived quantity PDFs and uncertainties'
tstarmc=tstarmc(sort(tstarmc))
dtstarmc=f_getdvar(tstarmc)
ttotalmc=ttotalmc(sort(ttotalmc))
dttotalmc=f_getdvar(ttotalmc)
betastarmc=betastarmc(sort(betastarmc))
dbetastarmc=f_getdvar(betastarmc)
betagasmc=betagasmc(sort(betagasmc))
dbetagasmc=f_getdvar(betagasmc)
surfglobalsmc=surfglobalsmc(sort(surfglobalsmc))
dsurfglobalsmc=f_getdvar(surfglobalsmc)
surfglobalgmc=surfglobalgmc(sort(surfglobalgmc))
dsurfglobalgmc=f_getdvar(surfglobalgmc)
surfsmc=surfsmc(sort(surfsmc))
dsurfsmc=f_getdvar(surfsmc)
surfgmc=surfgmc(sort(surfgmc))
dsurfgmc=f_getdvar(surfgmc)
zetastarmc=zetastarmc(sort(zetastarmc))
dzetastarmc=f_getdvar(zetastarmc)
zetagasmc=zetagasmc(sort(zetagasmc))
dzetagasmc=f_getdvar(zetagasmc)
rpeakstarmc=rpeakstarmc(sort(rpeakstarmc))
drpeakstarmc=f_getdvar(rpeakstarmc)
rpeakgasmc=rpeakgasmc(sort(rpeakgasmc))
drpeakgasmc=f_getdvar(rpeakgasmc)
vfbmc=vfbmc(sort(vfbmc))
dvfbmc=f_getdvar(vfbmc)
vfbrmc=vfbrmc(sort(vfbrmc))
dvfbrmc=f_getdvar(vfbrmc)
if complete then begin
tdeplmc=tdeplmc(sort(tdeplmc))
dtdeplmc=f_getdvar(tdeplmc)
esfmc=esfmc(sort(esfmc))
desfmc=f_getdvar(esfmc)
mdotsfmc=mdotsfmc(sort(mdotsfmc))
dmdotsfmc=f_getdvar(mdotsfmc)
mdotfbmc=mdotfbmc(sort(mdotfbmc))
dmdotfbmc=f_getdvar(mdotfbmc)
etainstmc=etainstmc(sort(etainstmc))
detainstmc=f_getdvar(etainstmc)
etaavgmc=etaavgmc(sort(etaavgmc))
detaavgmc=f_getdvar(etaavgmc)
pzeromc=pzeromc(sort(pzeromc))
dpzeromc=f_getdvar(pzeromc)
chiemc=chiemc(sort(chiemc))
dchiemc=f_getdvar(chiemc)
chiermc=chiermc(sort(chiermc))
dchiermc=f_getdvar(chiermc)
chipmc=chipmc(sort(chipmc))
dchipmc=f_getdvar(chipmc)
chiprmc=chiprmc(sort(chiprmc))
dchiprmc=f_getdvar(chiprmc)
endif
; diffuse fraction
fclmc=fclmc[sort(fclmc)]
dfclmc=f_getdvar(fclmc)
fgmcmc=fgmcmc[sort(fgmcmc)]
dfgmcmc=f_getdvar(fgmcmc)
;
qconstarmc = qconstarmc[sort(qconstarmc)]
dqconstarmc = f_getdvar(qconstarmc)
qcongasmc = qcongasmc[sort(qcongasmc)]
dqcongasmc = f_getdvar(qcongasmc)
etastarmc = etastarmc[sort(etastarmc)]
detastarmc = f_getdvar(etastarmc)
etagasmc = etagasmc[sort(etagasmc)]
detagasmc = f_getdvar(etagasmc)
qzetastarmc = qzetastarmc[sort(qzetastarmc)]
dqzetastarmc = f_getdvar(qzetastarmc)
qzetagasmc = qzetagasmc[sort(qzetagasmc)]
dqzetagasmc = f_getdvar(qzetagasmc)
;
;get error bars on best-fitting values
cumdistr=findgen(nphysmc)/(nphysmc-1.)
dummy=f_pdftovalues(tgasmc,dtstarmc,cumdistr,tgas)
tgas_errmin=dummy(1)
tgas_errmax=dummy(2)
dummy=f_pdftovalues(tovermc,dtstarmc,cumdistr,tover)
tover_errmin=dummy(1)
tover_errmax=dummy(2)
dummy=f_pdftovalues(tstarmc,dtstarmc,cumdistr,tstar)
tstar_errmin=dummy(1)
tstar_errmax=dummy(2)
dummy=f_pdftovalues(ttotalmc,dttotalmc,cumdistr,ttotal)
ttotal_errmin=dummy(1)
ttotal_errmax=dummy(2)
dummy=f_pdftovalues(betastarmc,dbetastarmc,cumdistr,betastar)
betastar_errmin=dummy(1)
betastar_errmax=dummy(2)
dummy=f_pdftovalues(betagasmc,dbetagasmc,cumdistr,betagas)
betagas_errmin=dummy(1)
betagas_errmax=dummy(2)
dummy=f_pdftovalues(surfglobalsmc,dsurfglobalsmc,cumdistr,surfglobals_fit)
surfglobals_errmin=dummy(1)
surfglobals_errmax=dummy(2)
dummy=f_pdftovalues(surfglobalgmc,dsurfglobalgmc,cumdistr,surfglobalg_fit)
surfglobalg_errmin=dummy(1)
surfglobalg_errmax=dummy(2)
dummy=f_pdftovalues(surfsmc,dsurfsmc,cumdistr,surfs_fit)
surfs_errmin=dummy(1)
surfs_errmax=dummy(2)
dummy=f_pdftovalues(surfgmc,dsurfgmc,cumdistr,surfg_fit)
surfg_errmin=dummy(1)
surfg_errmax=dummy(2)
dummy=f_pdftovalues(zetastarmc,dzetastarmc,cumdistr,zetastar)
zetastar_errmin=dummy(1)
zetastar_errmax=dummy(2)
dummy=f_pdftovalues(zetagasmc,dzetagasmc,cumdistr,zetagas)
zetagas_errmin=dummy(1)
zetagas_errmax=dummy(2)
dummy=f_pdftovalues(rpeakstarmc,drpeakstarmc,cumdistr,rpeakstar)
rpeakstar_errmin=dummy(1)
rpeakstar_errmax=dummy(2)
dummy=f_pdftovalues(rpeakgasmc,drpeakgasmc,cumdistr,rpeakgas)
rpeakgas_errmin=dummy(1)
rpeakgas_errmax=dummy(2)
dummy=f_pdftovalues(vfbmc,dvfbmc,cumdistr,vfb)
vfb_errmin=dummy(1)
vfb_errmax=dummy(2)
dummy=f_pdftovalues(vfbrmc,dvfbrmc,cumdistr,vfbr)
vfbr_errmin=dummy(1)
vfbr_errmax=dummy(2)
if complete then begin
dummy=f_pdftovalues(tdeplmc,dtdeplmc,cumdistr,tdepl)
tdepl_errmin=dummy(1)
tdepl_errmax=dummy(2)
dummy=f_pdftovalues(esfmc,desfmc,cumdistr,esf)
esf_errmin=dummy(1)
esf_errmax=dummy(2)
dummy=f_pdftovalues(mdotsfmc,dmdotsfmc,cumdistr,mdotsf)
mdotsf_errmin=dummy(1)
mdotsf_errmax=dummy(2)
dummy=f_pdftovalues(mdotfbmc,dmdotfbmc,cumdistr,mdotfb)
mdotfb_errmin=dummy(1)
mdotfb_errmax=dummy(2)
dummy=f_pdftovalues(etainstmc,detainstmc,cumdistr,etainst)
etainst_errmin=dummy(1)
etainst_errmax=dummy(2)
dummy=f_pdftovalues(etaavgmc,detaavgmc,cumdistr,etaavg)
etaavg_errmin=dummy(1)
etaavg_errmax=dummy(2)
dummy=f_pdftovalues(pzeromc,dpzeromc,cumdistr,pzero)
pzero_errmin=dummy(1)
pzero_errmax=dummy(2)
dummy=f_pdftovalues(chiemc,dchiemc,cumdistr,chie)
chie_errmin=dummy(1)
chie_errmax=dummy(2)
dummy=f_pdftovalues(chiermc,dchiermc,cumdistr,chier)
chier_errmin=dummy(1)
chier_errmax=dummy(2)
dummy=f_pdftovalues(chipmc,dchipmc,cumdistr,chip)
chip_errmin=dummy(1)
chip_errmax=dummy(2)
dummy=f_pdftovalues(chiprmc,dchiprmc,cumdistr,chipr)
chipr_errmin=dummy(1)
chipr_errmax=dummy(2)
endif
; diffuse fraction
dummy=f_pdftovalues(fclmc,dfclmc,cumdistr,fcl) ; get errors for fcl
fcl_errmin=dummy[1]
fcl_errmax=dummy[2]
dummy=f_pdftovalues(fgmcmc,dfgmcmc,cumdistr,fgmc)
fgmc_errmin=dummy[1]
fgmc_errmax=dummy[2]
;
dummy=f_pdftovalues(qconstarmc,dqconstarmc,cumdistr,qconstar) ; get errors for qconstar
qconstar_errmin=dummy[1]
qconstar_errmax=dummy[2]
dummy=f_pdftovalues(qcongasmc,dqcongasmc,cumdistr,qcongas) ; get errors for qcongas
qcongas_errmin=dummy[1]
qcongas_errmax=dummy[2]
dummy=f_pdftovalues(etastarmc,detastarmc,cumdistr,etastar) ; get errors for qzetastar
etastar_errmin=dummy[1]
etastar_errmax=dummy[2]
dummy=f_pdftovalues(etagasmc,detagasmc,cumdistr,etagas) ; get errors for qzetagas
etagas_errmin=dummy[1]
etagas_errmax=dummy[2]
dummy=f_pdftovalues(qzetastarmc,dqzetastarmc,cumdistr,qzetastar) ; get errors for qzetastar
qzetastar_errmin=dummy[1]
qzetastar_errmax=dummy[2]
dummy=f_pdftovalues(qzetagasmc,dqzetagasmc,cumdistr,qzetagas) ; get errors for qzetagas
qzetagas_errmin=dummy[1]
qzetagas_errmax=dummy[2]
;plot PDFs and write tables
print,' ==> plotting PDFs and writing them to output directory'
dummy=f_createpdf(tgasmc,dtgasmc,cumdistr,ntry)
tgasarr=dummy(*,0)
dtgas=dummy(*,1)
probtgas=dummy(*,2)
report=f_plotdistr(tgasarr,dtgas,probtgas,tgas,tgas_errmin,tgas_errmax,galaxy,figdir,'tgas','!8t!6!Dgas!N','!6Myr',0)
report=f_writepdf(alog10(tgasarr),alog10(dtgas),alog10(probtgas),galaxy,outputdir,'tgas','# log10(tgas[Myr]), log10(dtgas[Myr]), log10(PDF[Myr^-1])')
dummy=f_createpdf(tovermc,dtovermc,cumdistr,ntry)
toverarr=dummy(*,0)
dtover=dummy(*,1)
probtover=dummy(*,2)
report=f_plotdistr(toverarr,dtover,probtover,tover,tover_errmin,tover_errmax,galaxy,figdir,'tover','!8t!6!Dover!N','!6Myr',0)
report=f_writepdf(alog10(toverarr),alog10(dtover),alog10(probtover),galaxy,outputdir,'tover','# log10(tover[Myr]), log10(dtover[Myr]), log10(PDF[Myr^-1])')
dummy=f_createpdf(tstarmc,dtstarmc,cumdistr,ntry)
tstararr=dummy(*,0)
dtstar=dummy(*,1)
probtstar=dummy(*,2)
report=f_plotdistr(tstararr,dtstar,probtstar,tstar,tstar_errmin,tstar_errmax,galaxy,figdir,'tstar','!8t!6!Dstar!N','!6Myr',0)
report=f_writepdf(alog10(tstararr),alog10(dtstar),alog10(probtstar),galaxy,outputdir,'tstar','# log10(tstar[Myr]), log10(dtstar[Myr]), log10(PDF[Myr^-1])')
dummy=f_createpdf(ttotalmc,dttotalmc,cumdistr,ntry)
ttotalarr=dummy(*,0)
dttotal=dummy(*,1)
probttotal=dummy(*,2)
report=f_plotdistr(ttotalarr,dttotal,probttotal,ttotal,ttotal_errmin,ttotal_errmax,galaxy,figdir,'ttotal','!7s!6','!6Myr',0)
report=f_writepdf(alog10(ttotalarr),alog10(dttotal),alog10(probttotal),galaxy,outputdir,'ttotal','# log10(ttotal[Myr]), log10(dttotal[Myr]), log10(PDF[Myr^-1])')
dummy=f_createpdf(betastarmc,dbetastarmc,cumdistr,ntry)
betastararr=dummy(*,0)
dbetastar=dummy(*,1)
probbetastar=dummy(*,2)
report=f_plotdistr(betastararr,dbetastar,probbetastar,betastar,betastar_errmin,betastar_errmax,galaxy,figdir,'betastar','!7b!6!Dstar!N','',0)
report=f_writepdf(alog10(betastararr),alog10(dbetastar),alog10(probbetastar),galaxy,outputdir,'betastar','# log10(betastar), log10(dbetastar), log10(PDF)')
dummy=f_createpdf(betagasmc,dbetagasmc,cumdistr,ntry)
betagasarr=dummy(*,0)
dbetagas=dummy(*,1)
probbetagas=dummy(*,2)
report=f_plotdistr(betagasarr,dbetagas,probbetagas,betagas,betagas_errmin,betagas_errmax,galaxy,figdir,'betagas','!7b!6!Dgas!N','',0)
report=f_writepdf(alog10(betagasarr),alog10(dbetagas),alog10(probbetagas),galaxy,outputdir,'betagas','# log10(betagas), log10(dbetagas), log10(PDF)')
dummy=f_createpdf(surfglobalsmc,dsurfglobalsmc,cumdistr,ntry)
surfglobalsarr=dummy(*,0)
dsurfglobals=dummy(*,1)
probsurfglobals=dummy(*,2)
report=f_plotdistr(surfglobalsarr,dsurfglobals,probsurfglobals,surfglobals_fit,surfglobals_errmin,surfglobals_errmax,galaxy,figdir,'surfglobalstar','!7E!6!Dstar,global!N','',0)
report=f_writepdf(alog10(surfglobalsarr),alog10(dsurfglobals),alog10(probsurfglobals),galaxy,outputdir,'surfglobalstar','# log10(surfglobalstar), log10(dsurfglobalstar), log10(PDF)')
dummy=f_createpdf(surfglobalgmc,dsurfglobalgmc,cumdistr,ntry)
surfglobalgarr=dummy(*,0)
dsurfglobalg=dummy(*,1)
probsurfglobalg=dummy(*,2)
report=f_plotdistr(surfglobalgarr,dsurfglobalg,probsurfglobalg,surfglobalg_fit,surfglobalg_errmin,surfglobalg_errmax,galaxy,figdir,'surfglobalgas','!7E!6!Dgas,global!N','',0)
report=f_writepdf(alog10(surfglobalgarr),alog10(dsurfglobalg),alog10(probsurfglobalg),galaxy,outputdir,'surfglobalgas','# log10(surfglobalgas), log10(dsurfglobalgas), log10(PDF)')
dummy=f_createpdf(surfsmc,dsurfsmc,cumdistr,ntry)
surfsarr=dummy(*,0)
dsurfs=dummy(*,1)
probsurfs=dummy(*,2)
report=f_plotdistr(surfsarr,dsurfs,probsurfs,surfs_fit,surfs_errmin,surfs_errmax,galaxy,figdir,'surfconstar','!7E!6!Dstar!N','',0)
report=f_writepdf(alog10(surfsarr),alog10(dsurfs),alog10(probsurfs),galaxy,outputdir,'surfconstar','# log10(surfconstar), log10(dsurfconstar), log10(PDF)')
dummy=f_createpdf(surfgmc,dsurfgmc,cumdistr,ntry)
surfgarr=dummy(*,0)
dsurfg=dummy(*,1)
probsurfg=dummy(*,2)
report=f_plotdistr(surfgarr,dsurfg,probsurfg,surfg_fit,surfg_errmin,surfg_errmax,galaxy,figdir,'surfcongas','!7E!6!Dgas!N','',0)
report=f_writepdf(alog10(surfgarr),alog10(dsurfg),alog10(probsurfg),galaxy,outputdir,'surfcongas','# log10(surfcongas), log10(dsurfcongas), log10(PDF)')
dummy=f_createpdf(zetastarmc,dzetastarmc,cumdistr,ntry)
zetastararr=dummy(*,0)
dzetastar=dummy(*,1)
probzetastar=dummy(*,2)
report=f_plotdistr(zetastararr,dzetastar,probzetastar,zetastar,zetastar_errmin,zetastar_errmax,galaxy,figdir,'zetastar','!7f!6!Dstar!N','',0)
report=f_writepdf(alog10(zetastararr),alog10(dzetastar),alog10(probzetastar),galaxy,outputdir,'zetastar','# log10(zetastar), log10(dzetastar), log10(PDF)')
dummy=f_createpdf(zetagasmc,dzetagasmc,cumdistr,ntry)
zetagasarr=dummy(*,0)
dzetagas=dummy(*,1)
probzetagas=dummy(*,2)
report=f_plotdistr(zetagasarr,dzetagas,probzetagas,zetagas,zetagas_errmin,zetagas_errmax,galaxy,figdir,'zetagas','!7f!6!Dgas!N','',0)
report=f_writepdf(alog10(zetagasarr),alog10(dzetagas),alog10(probzetagas),galaxy,outputdir,'zetagas','# log10(zetagas), log10(dzetagas), log10(PDF)')
dummy=f_createpdf(rpeakstarmc,drpeakstarmc,cumdistr,ntry)
rpeakstararr=dummy(*,0)
drpeakstar=dummy(*,1)
probrpeakstar=dummy(*,2)
report=f_plotdistr(rpeakstararr,drpeakstar,probrpeakstar,rpeakstar,rpeakstar_errmin,rpeakstar_errmax,galaxy,figdir,'rpeakstar','!8r!6!Dstar!N','!6pc',0)
report=f_writepdf(alog10(rpeakstararr),alog10(drpeakstar),alog10(probrpeakstar),galaxy,outputdir,'rpeakstar','# log10(rpeakstar[pc]), log10(drpeakstar[pc]), log10(PDF[pc^-1])')
dummy=f_createpdf(rpeakgasmc,drpeakgasmc,cumdistr,ntry)
rpeakgasarr=dummy(*,0)
drpeakgas=dummy(*,1)
probrpeakgas=dummy(*,2)
report=f_plotdistr(rpeakgasarr,drpeakgas,probrpeakgas,rpeakgas,rpeakgas_errmin,rpeakgas_errmax,galaxy,figdir,'rpeakgas','!8r!6!Dgas!N','!6pc',0)
report=f_writepdf(alog10(rpeakgasarr),alog10(drpeakgas),alog10(probrpeakgas),galaxy,outputdir,'rpeakgas','# log10(rpeakgas[pc]), log10(drpeakgas[pc]), log10(PDF[pc^-1])')
dummy=f_createpdf(vfbmc,dvfbmc,cumdistr,ntry)
vfbarr=dummy(*,0)
dvfb=dummy(*,1)
probvfb=dummy(*,2)
report=f_plotdistr(vfbarr,dvfb,probvfb,vfb,vfb_errmin,vfb_errmax,galaxy,figdir,'vfb','!8v!6!Dfb!N','!6km s!U-1!N',0)
report=f_writepdf(alog10(vfbarr),alog10(dvfb),alog10(probvfb),galaxy,outputdir,'vfb','# log10(vfb[km s^-1]), log10(dvfb[km s^-1]), log10(PDF[km^-1 s])')
dummy=f_createpdf(vfbrmc,dvfbrmc,cumdistr,ntry)
vfbrarr=dummy(*,0)
dvfbr=dummy(*,1)
probvfbr=dummy(*,2)
report=f_plotdistr(vfbrarr,dvfbr,probvfbr,vfbr,vfbr_errmin,vfbr_errmax,galaxy,figdir,'vfbr','!8v!6!Dfb,!8r!6!N','!6km s!U-1!N',0)
report=f_writepdf(alog10(vfbrarr),alog10(dvfbr),alog10(probvfbr),galaxy,outputdir,'vfbr','# log10(vfbr[km s^-1]), log10(dvfbr[km s^-1]), log10(PDF[km^-1 s])')
if complete then begin
dummy=f_createpdf(tdeplmc,dtdeplmc,cumdistr,ntry)
tdeplarr=dummy(*,0)
dtdepl=dummy(*,1)
probtdepl=dummy(*,2)
report=f_plotdistr(tdeplarr,dtdepl,probtdepl,tdepl,tdepl_errmin,tdepl_errmax,galaxy,figdir,'tdepl','!8t!6!Ddepl!N','!6Gyr',0)
report=f_writepdf(alog10(tdeplarr),alog10(dtdepl),alog10(probtdepl),galaxy,outputdir,'tdepl','# log10(tdepl[Gyr]), log10(dtdepl[Gyr]), log10(PDF[Gyr^-1])')
dummy=f_createpdf(esfmc,desfmc,cumdistr,ntry)
esfarr=dummy(*,0)
desf=dummy(*,1)
probesf=dummy(*,2)
report=f_plotdistr(esfarr,desf,probesf,esf,esf_errmin,esf_errmax,galaxy,figdir,'esf','!7e!6!Dsf!N','',0)
report=f_writepdf(alog10(esfarr),alog10(desf),alog10(probesf),galaxy,outputdir,'esf','# log10(esf), log10(desf), log10(PDF)')
dummy=f_createpdf(mdotsfmc,dmdotsfmc,cumdistr,ntry)
mdotsfarr=dummy(*,0)
dmdotsf=dummy(*,1)
probmdotsf=dummy(*,2)
report=f_plotdistr(mdotsfarr,dmdotsf,probmdotsf,mdotsf,mdotsf_errmin,mdotsf_errmax,galaxy,figdir,'mdotsf','!6(d!8M!6/d!8t!6)!Dsf!N','!6M!D!9n!6!N yr!U-1!N',0)
report=f_writepdf(alog10(mdotsfarr),alog10(dmdotsf),alog10(probmdotsf),galaxy,outputdir,'mdotsf','# log10(mdotsf[Msun yr^-1]), log10(dmdotsf[Msun yr^-1]), log10(PDF[Msun^-1 yr])')
dummy=f_createpdf(mdotfbmc,dmdotfbmc,cumdistr,ntry)
mdotfbarr=dummy(*,0)
dmdotfb=dummy(*,1)
probmdotfb=dummy(*,2)
report=f_plotdistr(mdotfbarr,dmdotfb,probmdotfb,mdotfb,mdotfb_errmin,mdotfb_errmax,galaxy,figdir,'mdotfb','!6(d!8M!6/d!8t!6)!Dfb!N','!6M!D!9n!6!N yr!U-1!N',0)
report=f_writepdf(alog10(mdotfbarr),alog10(dmdotfb),alog10(probmdotfb),galaxy,outputdir,'mdotfb','# log10(mdotfb[Msun yr^-1]), log10(dmdotfb[Msun yr^-1]), log10(PDF[Msun^-1 yr])')
dummy=f_createpdf(etainstmc,detainstmc,cumdistr,ntry)
etainstarr=dummy(*,0)
detainst=dummy(*,1)
probetainst=dummy(*,2)
report=f_plotdistr(etainstarr,detainst,probetainst,etainst,etainst_errmin,etainst_errmax,galaxy,figdir,'etainst','!7g!6!Dfb!N','',0)
report=f_writepdf(alog10(etainstarr),alog10(detainst),alog10(probetainst),galaxy,outputdir,'etainst','# log10(etainst), log10(detainst), log10(PDF)')
dummy=f_createpdf(etaavgmc,detaavgmc,cumdistr,ntry)
etaavgarr=dummy(*,0)
detaavg=dummy(*,1)
probetaavg=dummy(*,2)
report=f_plotdistr(etaavgarr,detaavg,probetaavg,etaavg,etaavg_errmin,etaavg_errmax,galaxy,figdir,'etaavg','!6<!7g!6!Dfb!N>','',0)
report=f_writepdf(alog10(etaavgarr),alog10(detaavg),alog10(probetaavg),galaxy,outputdir,'etaavg','# log10(etaavg), log10(detaavg), log10(PDF)')
dummy=f_createpdf(pzeromc,dpzeromc,cumdistr,ntry)
pzeroarr=dummy(*,0)
dpzero=dummy(*,1)
probpzero=dummy(*,2)
report=f_plotdistr(pzeroarr,dpzero,probpzero,pzero,pzero_errmin,pzero_errmax,galaxy,figdir,'pzero','!8p!6!D0!N','!6km s!U-1!N',0)
report=f_writepdf(alog10(pzeroarr),alog10(dpzero),alog10(probpzero),galaxy,outputdir,'pzero','# log10(p0[km s^-1]), log10(dp0[km s^-1]), log10(PDF[km^-1 s])')
dummy=f_createpdf(chiemc,dchiemc,cumdistr,ntry)
chiearr=dummy(*,0)
dchie=dummy(*,1)
probchie=dummy(*,2)
report=f_plotdistr(chiearr,dchie,probchie,chie,chie_errmin,chie_errmax,galaxy,figdir,'chie','!7v!6!Dfb,!8E!6!N','',0)
report=f_writepdf(alog10(chiearr),alog10(dchie),alog10(probchie),galaxy,outputdir,'chie','# log10(chie), log10(dchie), log10(PDF)')
dummy=f_createpdf(chiermc,dchiermc,cumdistr,ntry)
chierarr=dummy(*,0)
dchier=dummy(*,1)
probchier=dummy(*,2)
report=f_plotdistr(chierarr,dchier,probchier,chier,chier_errmin,chier_errmax,galaxy,figdir,'chier','!7v!6!Dfb,!8E,r!6!N','',0)
report=f_writepdf(alog10(chierarr),alog10(dchier),alog10(probchier),galaxy,outputdir,'chier','# log10(chier), log10(dchier), log10(PDF)')
dummy=f_createpdf(chipmc,dchipmc,cumdistr,ntry)
chiparr=dummy(*,0)
dchip=dummy(*,1)
probchip=dummy(*,2)
report=f_plotdistr(chiparr,dchip,probchip,chip,chip_errmin,chip_errmax,galaxy,figdir,'chip','!7v!6!Dfb,!8p!6!N','',0)
report=f_writepdf(alog10(chiparr),alog10(dchip),alog10(probchip),galaxy,outputdir,'chip','# log10(chip), log10(dchip), log10(PDF)')
dummy=f_createpdf(chiprmc,dchiprmc,cumdistr,ntry)
chiprarr=dummy(*,0)
dchipr=dummy(*,1)
probchipr=dummy(*,2)
report=f_plotdistr(chiprarr,dchipr,probchipr,chipr,chipr_errmin,chipr_errmax,galaxy,figdir,'chipr','!7v!6!Dfb,!8p,r!6!N','',0)
report=f_writepdf(alog10(chiprarr),alog10(dchipr),alog10(probchipr),galaxy,outputdir,'chipr','# log10(chipr), log10(dchipr), log10(PDF)')
endif
; diffuse fraction
dummy=f_createpdf(fclmc,dfclmc,cumdistr,ntry)
fclarr=dummy(*,0)
dfcl=dummy(*,1)
probfcl=dummy(*,2)
report=f_plotdistr(fclarr,dfcl,probfcl,fcl,fcl_errmin,fcl_errmax,galaxy,figdir,'fcl','!8f!6!Dcl!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(fclarr),alog10(dfcl),alog10(probfcl),galaxy,outputdir,'fcl','# log10(fcl), log10(dfcl), log10(PDF)')
;
dummy=f_createpdf(fgmcmc,dfgmcmc,cumdistr,ntry)
fgmcarr=dummy(*,0)
dfgmc=dummy(*,1)
probfgmc=dummy(*,2)
report=f_plotdistr(fgmcarr,dfgmc,probfgmc,fgmc,fgmc_errmin,fgmc_errmax,galaxy,figdir,'fgmc','!8f!6!Dgmc!N','',0);'!7f!6!Dgmc!N' = f_gmc
report=f_writepdf(alog10(fgmcarr),alog10(dfgmc),alog10(probfgmc),galaxy,outputdir,'fgmc','# log10(fgmc), log10(dfgmc), log10(PDF)')
;
dummy=f_createpdf(qconstarmc,dqconstarmc,cumdistr,ntry)
qconstararr=dummy(*,0)
dqconstar=dummy(*,1)
probqconstar=dummy(*,2)
report=f_plotdistr(qconstararr,dqconstar,probqconstar,qconstar,qconstar_errmin,qconstar_errmax,galaxy,figdir,'qconstar','!6Q!Dcon,star!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(qconstararr),alog10(dqconstar),alog10(probqconstar),galaxy,outputdir,'qconstar','# log10(qconstar), log10(dqconstar), log10(PDF)')
;
dummy=f_createpdf(qcongasmc,dqcongasmc,cumdistr,ntry)
qcongasarr=dummy(*,0)
dqcongas=dummy(*,1)
probqcongas=dummy(*,2)
report=f_plotdistr(qcongasarr,dqcongas,probqcongas,qcongas,qcongas_errmin,qcongas_errmax,galaxy,figdir,'qcongas','!6Q!Dcon,gas!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(qcongasarr),alog10(dqcongas),alog10(probqcongas),galaxy,outputdir,'qcongas','# log10(qcongas), log10(dqcongas), log10(PDF)')
;
dummy=f_createpdf(etastarmc,detastarmc,cumdistr,ntry)
etastararr=dummy(*,0)
detastar=dummy(*,1)
probetastar=dummy(*,2)
report=f_plotdistr(etastararr,detastar,probetastar,etastar,etastar_errmin,etastar_errmax,galaxy,figdir,'etastar','!7g!6!Dstar!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(etastararr),alog10(detastar),alog10(probetastar),galaxy,outputdir,'etastar','# log10(etastar), log10(detastar), log10(PDF)')
;
dummy=f_createpdf(etagasmc,detagasmc,cumdistr,ntry)
etagasarr=dummy(*,0)
detagas=dummy(*,1)
probetagas=dummy(*,2)
report=f_plotdistr(etagasarr,detagas,probetagas,etagas,etagas_errmin,etagas_errmax,galaxy,figdir,'etagas','!7g!6!Dgas!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(etagasarr),alog10(detagas),alog10(probetagas),galaxy,outputdir,'etagas','# log10(etagas), log10(detagas), log10(PDF)')
;
dummy=f_createpdf(qzetastarmc,dqzetastarmc,cumdistr,ntry)
qzetastararr=dummy(*,0)
dqzetastar=dummy(*,1)
probqzetastar=dummy(*,2)
report=f_plotdistr(qzetastararr,dqzetastar,probqzetastar,qzetastar,qzetastar_errmin,qzetastar_errmax,galaxy,figdir,'qzetastar','!6Q!D!7f!6,star!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(qzetastararr),alog10(dqzetastar),alog10(probqzetastar),galaxy,outputdir,'qzetastar','# log10(qzetastar), log10(dqzetastar), log10(PDF)')
;
dummy=f_createpdf(qzetagasmc,dqzetagasmc,cumdistr,ntry)
qzetagasarr=dummy(*,0)
dqzetagas=dummy(*,1)
probqzetagas=dummy(*,2)
report=f_plotdistr(qzetagasarr,dqzetagas,probqzetagas,qzetagas,qzetagas_errmin,qzetagas_errmax,galaxy,figdir,'qzetagas','!6Q!D!7f!6,gas!N','',0) ;'!7f!6!Dcl!N' = f_cl
report=f_writepdf(alog10(qzetagasarr),alog10(dqzetagas),alog10(probqzetagas),galaxy,outputdir,'qzetagas','# log10(qzetagas), log10(dqzetagas), log10(PDF)')
returnarr = [tgas,tgas_errmin,tgas_errmax, $
tover,tover_errmin,tover_errmax, $
tstar,tstar_errmin,tstar_errmax, $
ttotal,ttotal_errmin,ttotal_errmax, $
betastar,betastar_errmin,betastar_errmax, $
betagas,betagas_errmin,betagas_errmax, $
surfglobals_fit,surfglobals_errmin,surfglobals_errmax, $
surfglobalg_fit,surfglobalg_errmin,surfglobalg_errmax, $
surfs_fit,surfs_errmin,surfs_errmax, $
surfg_fit,surfg_errmin,surfg_errmax, $
fcl, fcl_errmin, fcl_errmax, $
fgmc, fgmc_errmin, fgmc_errmax, $
qconstar,qconstar_errmin,qconstar_errmax, $
qcongas,qcongas_errmin,qcongas_errmax, $
etastar,etastar_errmin,etastar_errmax, $
etagas,etagas_errmin,etagas_errmax, $
qzetastar,qzetastar_errmin,qzetastar_errmax, $
qzetagas,qzetagas_errmin,qzetagas_errmax, $
zetastar,zetastar_errmin,zetastar_errmax, $
zetagas,zetagas_errmin,zetagas_errmax, $
rpeakstar,rpeakstar_errmin,rpeakstar_errmax, $
rpeakgas,rpeakgas_errmin,rpeakgas_errmax, $
vfb,vfb_errmin,vfb_errmax, $
vfbr,vfbr_errmin,vfbr_errmax]
if complete then returnarr = [returnarr, $
tdepl,tdepl_errmin,tdepl_errmax, $
esf,esf_errmin,esf_errmax, $
mdotsf,mdotsf_errmin,mdotsf_errmax, $
mdotfb,mdotfb_errmin,mdotfb_errmax, $
etainst,etainst_errmin,etainst_errmax, $
etaavg,etaavg_errmin,etaavg_errmax, $
pzero,pzero_errmin,etaavg_errmax, $
chie,chie_errmin,chie_errmax, $
chier,chier_errmin,chier_errmax, $
chip,chip_errmin,chip_errmax, $
chipr,chipr_errmin,chipr_errmax]
return,returnarr
end