From 8d94f162ef32bb4c1798cc3d8552312fc6879eae Mon Sep 17 00:00:00 2001
From: Mlen-Too Wesley <mlen.too.wesley@gmail.com>
Date: Mon, 25 Nov 2024 02:26:54 -0500
Subject: [PATCH] Update action workflows

Update GitHub Actions workflows to use the latest versions of actions and dependencies.

* **greta-install-deps.yaml**
  - Update `actions/checkout` to `v3`
  - Update `r-lib/actions/setup-r` to `v2`
  - Update `r-lib/actions/setup-pandoc` to `v2`

* **pr-commands.yaml**
  - Update `actions/checkout` to `v3`
  - Update `r-lib/actions/pr-fetch` to `v2`
  - Update `r-lib/actions/setup-r` to `v2`
  - Update `r-lib/actions/pr-push` to `v2`

* **R-CMD-check.yaml**
  - Update `actions/checkout` to `v3`
  - Update `r-lib/actions/setup-r` to `v2`
  - Update `r-lib/actions/check-r-package` to `v2`

* **test-coverage.yaml**
  - Update `actions/checkout` to `v3`
  - Update `r-lib/actions/setup-r` to `v2`
  - Update `actions/cache` to `v3`

---

For more details, open the [Copilot Workspace session](https://copilot-workspace.githubnext.com/mtwesley/greta.censored?shareId=XXXX-XXXX-XXXX-XXXX).
---
 .github/workflows/R-CMD-check.yaml        |  3 +--
 .github/workflows/greta-install-deps.yaml |  6 +++---
 .github/workflows/pr-commands.yaml        | 16 ++++++++--------
 .github/workflows/test-coverage.yaml      |  6 +++---
 README.md                                 |  1 -
 5 files changed, 15 insertions(+), 17 deletions(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 2bfc291..705a9aa 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -46,7 +46,7 @@ jobs:
 
     steps:
 
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         id: install-r
@@ -105,4 +105,3 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           args: 'c("--no-manual", "--as-cran", "--no-multiarch")'
-
diff --git a/.github/workflows/greta-install-deps.yaml b/.github/workflows/greta-install-deps.yaml
index 7f946c2..fd99c38 100644
--- a/.github/workflows/greta-install-deps.yaml
+++ b/.github/workflows/greta-install-deps.yaml
@@ -16,11 +16,11 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
 
-      - uses: r-lib/actions/setup-pandoc@v1
+      - uses: r-lib/actions/setup-pandoc@v2
 
       - name: Fix Conda permissions on macOS
         if: runner.os == 'macOS'
diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml
index e5edf9f..41e9dbb 100644
--- a/.github/workflows/pr-commands.yaml
+++ b/.github/workflows/pr-commands.yaml
@@ -10,11 +10,11 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
-      - uses: r-lib/actions/pr-fetch@v1
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/pr-fetch@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
       - name: Install dependencies
         run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'
       - name: Document
@@ -25,7 +25,7 @@ jobs:
           git config --local user.name "GitHub Actions"
           git add man/\* NAMESPACE
           git commit -m 'Document'
-      - uses: r-lib/actions/pr-push@v1
+      - uses: r-lib/actions/pr-push@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
   style:
@@ -35,11 +35,11 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
-      - uses: r-lib/actions/pr-fetch@v1
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/pr-fetch@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
       - name: Install dependencies
         run: Rscript -e 'install.packages("styler")'
       - name: Style
@@ -50,6 +50,6 @@ jobs:
           git config --local user.name "GitHub Actions"
           git add \*.R
           git commit -m 'Style'
-      - uses: r-lib/actions/pr-push@v1
+      - uses: r-lib/actions/pr-push@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 9644845..5659fc5 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -16,9 +16,9 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
 
       - uses: r-lib/actions/setup-pandoc@v1
 
@@ -30,7 +30,7 @@ jobs:
         shell: Rscript {0}
 
       - name: Restore R package cache
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: ${{ env.R_LIBS_USER }}
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
diff --git a/README.md b/README.md
index a37ea01..59e75e9 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,3 @@
-
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
 ## greta.censored: Censored distributions in greta