DESCRIPTION

Package: Connectome
Version: 1.0.1
Date: 2021-01-25
Title: Single Cell Connectomics
Authors@R: person("Micha Sam", "Brickman Raredon", email = "michasam.raredon@yale.edu", role = c("aut", "cre"))
Description: A toolkit to explore cell-cell connectivity patterns based on ligand and receptor data in heterogeneous single-cell datasets. Extends and generalizes the methods first explored in Raredon MSB et al (2019) <doi:10.1126/sciadv.aaw3851>. Preprint is available at https://www.biorxiv.org/content/10.1101/2021.01.21.427529v1. Peer-reviewed version is available at https://doi.org/10.1038/s41598-022-07959-x.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Imports:
  dplyr,
  ggrepel,
  igraph,
  plotrix,
  RColorBrewer,
  scales,
  Seurat,
  tibble,
  data.table,
  BisRNA,
  ggplot2,
  cowplot,
  Matrix,
  gtools,
  permute,
  circlize,
  ComplexHeatmap
Suggests:
  knitr,
  rmarkdown