From ec13bd1c4b1f1b0aba20b07c5a0b451bab36d243 Mon Sep 17 00:00:00 2001
From: "Martin R. Smith" <1695515+ms609@users.noreply.github.com>
Date: Thu, 22 Aug 2024 14:35:57 +0100
Subject: [PATCH] Document VisMatch parameters

---
 DESCRIPTION              |  2 +-
 NEWS.md                  |  4 +++-
 man/VisualizeMatching.Rd | 10 +++++++++-
 3 files changed, 13 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index a244aee4a..a3dc1737f 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: TreeDist
 Type: Package
 Title: Calculate and Map Distances Between Phylogenetic Trees
-Version: 2.8.0.9000
+Version: 2.8.0.9001
 Authors@R: c(person("Martin R.", "Smith",
                     email = "martin.smith@durham.ac.uk", 
                     role = c("aut", "cre", "cph", "prg"), 
diff --git a/NEWS.md b/NEWS.md
index b5a250748..423045cb6 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,7 @@
-# TreeDist 2.8.0.9000 (development)
+# TreeDist 2.8.0.9001 (development)
 
+- `VisualizeMatching()` allows more control over output format
+  ([#124](https://github.com/ms609/TreeDist/issues/124))
 - `SpectralEigens()` returns correct eigenvalues (smallest was overlooked)
 - `SpectralEigens()` handles values of `nEig` larger than the input
 
diff --git a/man/VisualizeMatching.Rd b/man/VisualizeMatching.Rd
index 689af2562..6740b34e0 100644
--- a/man/VisualizeMatching.Rd
+++ b/man/VisualizeMatching.Rd
@@ -14,7 +14,9 @@ VisualizeMatching(
   Plot = plot.phylo,
   matchZeros = TRUE,
   plainEdges = FALSE,
-  edge.cex = 0.8,
+  edge.cex = par("cex"),
+  value.cex = edge.cex * 0.8,
+  edge.frame = "rect",
   edge.width = 1,
   edge.color = "black",
   show.edgelabels = TRUE,
@@ -43,6 +45,12 @@ similarity of the associated splits (\code{FALSE}).}
 
 \item{edge.cex}{Character expansion for edge labels.}
 
+\item{value.cex}{Character expansion for values on edge labels.}
+
+\item{edge.frame}{Character specifying the kind of frame to be printed around
+the text of the edge labels.  Choose an abbreviation of \code{"rect"}, \code{"circle"},
+or \code{"none"}.}
+
 \item{edge.width, edge.color, \dots}{Additional parameters to send to \code{Plot()}.}
 }
 \description{