From ce7ab76d6fcadfdd8840b83e1ac149967375fc9a Mon Sep 17 00:00:00 2001 From: "Martin R. Smith" <1695515+ms609@users.noreply.github.com> Date: Thu, 22 Aug 2024 13:21:09 +0100 Subject: [PATCH] xpd don't clip --- vignettes/using-distances.Rmd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/vignettes/using-distances.Rmd b/vignettes/using-distances.Rmd index 3638acea..7a8885cf 100644 --- a/vignettes/using-distances.Rmd +++ b/vignettes/using-distances.Rmd @@ -216,11 +216,11 @@ testTrees <- list( bigErr = ape::read.tree(text = '(a, (c, (((b, d), (f, h)), (e, g))));') ) VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$lackRes) -points(4, 7.5, pch = 2, cex = 3, col = "#E69F00") +points(4, 7.5, pch = 2, cex = 3, col = "#E69F00", xpd = NA) VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$smallErr) -points(4, 7.5, pch = 3, cex = 3, col = "#56B4E9") +points(4, 7.5, pch = 3, cex = 3, col = "#56B4E9", xpd = NA) VisualizeMatching(MutualClusteringInfo, testTrees$trueTree, testTrees$bigErr) -points(4, 7.5, pch = 4, cex = 3, col = "#009E73") +points(4, 7.5, pch = 4, cex = 3, col = "#009E73", xpd = NA) ``` Better trees plot vertically towards the "100% shared information" vertex.