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NEWS.md

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Rogue v2.1.6

  • Legend annotations in documentation.
  • Disable parallel evaluation by default in TipInstability(), adding parallel parameter to allow user to override.
  • Use format string in REprintf().

Rogue v2.1.5

  • Call C functions using symbols, not strings.

Rogue v2.1.4

  • C2X compliant function prototypes.

  • Remove unused sprintf() calls.

Rogue v2.1.3

  • ColByStability() gains pal argument to allow specification of custom palettes.

Rogue v2.1.2

  • Faster rogue detection when edge lengths provided, per report by Joe Keating.

  • Don't list neverDrop in QuickRogue(fullSeq = TRUE).

Rogue v2.1.1

  • Handle ColByStability(trees = NULL).

Rogue v2.1.0

  • Early termination of QuickRogue() when no further improvement possible.

  • Cophenetic() renamed to the more accurate GraphGeodesic().

  • Calculate information content of consensus trees with p > 0.5 (#15).

  • Improve support for multiPhylo objects.

  • New vignette detailing rogue detection with Bayesian tree samples.

Rogue v2.0.0

  • Information theoretic rogue detection (per Smith, 2022).

Rogue v1.0.0

  • R interface to RogueNaRok.