From 163f0c8806ce7381bf528f4d3a11d78797f81869 Mon Sep 17 00:00:00 2001 From: Linus Heck Date: Thu, 3 Oct 2024 09:54:16 +0200 Subject: [PATCH 1/6] Force normal kernel --- .github/workflows/docs.yml | 2 +- .github/workflows/test.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 337a674..ff27da9 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -60,7 +60,7 @@ jobs: - name: Run documentation notebooks run: | - poetry run jupyter nbconvert --execute --to notebook --inplace ${{ steps.glob.outputs.paths }} + poetry run jupyter nbconvert --execute --ExecutePreprocessor.kernel_name=python3 --to notebook --inplace ${{ steps.glob.outputs.paths }} - name: Generate docs working-directory: docs/ diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 4dbeebf..39ae095 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -54,4 +54,4 @@ jobs: - name: Run documentation notebooks run: | - poetry run jupyter nbconvert --execute --to notebook --inplace ${{ steps.glob.outputs.paths }} + poetry run jupyter nbconvert --execute --ExecutePreprocessor.kernel_name=python3 --to notebook --inplace ${{ steps.glob.outputs.paths }} From 5cea1d1320ed1ae55a98f7859f57278420254f3e Mon Sep 17 00:00:00 2001 From: Linus Heck Date: Thu, 3 Oct 2024 09:59:55 +0200 Subject: [PATCH 2/6] Fix die notebook --- docs/getting_started/die.ipynb | 39 +++++++++++++--------------------- 1 file changed, 15 insertions(+), 24 deletions(-) diff --git a/docs/getting_started/die.ipynb b/docs/getting_started/die.ipynb index 7ba0593..d174a15 100644 --- a/docs/getting_started/die.ipynb +++ b/docs/getting_started/die.ipynb @@ -37,7 +37,7 @@ { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "6aa5be91a6a041c39340ffa6390225b5", + "model_id": "a1ed130eccd84b41a4b77f4d94c7a6ad", "version_major": 2, "version_minor": 0 }, @@ -51,7 +51,7 @@ { "data": { "text/html": [ - "" + "" ], "text/plain": [ "" @@ -59,20 +59,6 @@ }, "metadata": {}, "output_type": "display_data" - }, - { - "data": { - "application/vnd.jupyter.widget-view+json": { - "model_id": "7c32b09fa7ad42ddb62483aa1b038354", - "version_major": 2, - "version_minor": 0 - }, - "text/plain": [ - "HBox(children=(Output(), Output()))" - ] - }, - "metadata": {}, - "output_type": "display_data" } ], "source": [ @@ -85,7 +71,7 @@ "init.set_transitions(\n", " [(1 / 6, dtmc.new_state(f\"rolled{i}\", {\"rolled\": i})) for i in range(1, 7)]\n", ")\n", - "\n", + "dtmc.add_self_loops()\n", "vis = stormvogel.show.show(dtmc, show_editor=True)" ] }, @@ -95,10 +81,15 @@ "metadata": {}, "outputs": [ { - "name": "stdout", - "output_type": "stream", - "text": [ - "This model has states with no outgoing transitions. Use the add_self_loops() function to add self loops to all states with no outgoing transition\n" + "ename": "RuntimeError", + "evalue": "This model has states with no outgoing transitions.\nUse the add_self_loops() function to add self loops to all states with no outgoing transition.", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[3], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m stormpy_dtmc \u001b[38;5;241m=\u001b[39m \u001b[43mstormvogel\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmapping\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mstormvogel_to_stormpy\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdtmc\u001b[49m\u001b[43m)\u001b[49m\n", + "File \u001b[0;32m~/git/stormpy/stormvogel/stormvogel/mapping.py:299\u001b[0m, in \u001b[0;36mstormvogel_to_stormpy\u001b[0;34m(model)\u001b[0m\n\u001b[1;32m 295\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mRuntimeError\u001b[39;00m(\n\u001b[1;32m 296\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mThis type of model is not yet supported for this action\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 297\u001b[0m )\n\u001b[1;32m 298\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m--> 299\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mRuntimeError\u001b[39;00m(\n\u001b[1;32m 300\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mThis model has states with no outgoing transitions.\u001b[39m\u001b[38;5;130;01m\\n\u001b[39;00m\u001b[38;5;124mUse the add_self_loops() function to add self loops to all states with no outgoing transition.\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 301\u001b[0m )\n", + "\u001b[0;31mRuntimeError\u001b[0m: This model has states with no outgoing transitions.\nUse the add_self_loops() function to add self loops to all states with no outgoing transition." ] } ], @@ -123,9 +114,9 @@ ], "metadata": { "kernelspec": { - "display_name": "Python (stormvogel)", + "display_name": ".venv", "language": "python", - "name": "stormvogel-env" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -137,7 +128,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.2" + "version": "3.12.6" } }, "nbformat": 4, From 0fccd74237f22e17bdc8de61a3fdf159364cbc57 Mon Sep 17 00:00:00 2001 From: Linus Heck Date: Thu, 3 Oct 2024 10:08:12 +0200 Subject: [PATCH 3/6] Re-run notebooks --- docs/getting_started/die.ipynb | 13632 +++++++- docs/getting_started/mdp.ipynb | 25984 +++++++++++++++- .../naive_value_iteration.ipynb | 1485 +- docs/getting_started/prism.ipynb | 13666 +++++++- docs/getting_started/study.ipynb | 13631 +++++++- 5 files changed, 68114 insertions(+), 284 deletions(-) diff --git a/docs/getting_started/die.ipynb b/docs/getting_started/die.ipynb index d174a15..803f02f 100644 --- a/docs/getting_started/die.ipynb +++ b/docs/getting_started/die.ipynb @@ -10,7 +10,14 @@ { "cell_type": "code", "execution_count": 1, - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:38.879996Z", + "iopub.status.busy": "2024-10-03T08:06:38.879715Z", + "iopub.status.idle": "2024-10-03T08:06:39.041078Z", + "shell.execute_reply": "2024-10-03T08:06:39.040839Z" + } + }, "outputs": [], "source": [ "import stormvogel.model\n", @@ -31,13 +38,19 @@ "cell_type": "code", "execution_count": 2, "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:39.043046Z", + "iopub.status.busy": "2024-10-03T08:06:39.042920Z", + "iopub.status.idle": "2024-10-03T08:06:49.499984Z", + "shell.execute_reply": "2024-10-03T08:06:49.499719Z" + }, "scrolled": true }, "outputs": [ { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "a1ed130eccd84b41a4b77f4d94c7a6ad", + "model_id": "a21acae949ca4ae79a2b6f77015774cd", "version_major": 2, "version_minor": 0 }, @@ -51,7 +64,7 @@ { "data": { "text/html": [ - "" + "" ], "text/plain": [ "" @@ -59,76 +72,13551 @@ }, "metadata": {}, "output_type": "display_data" - } - ], - "source": [ - "# Create a new model with the name \"Die\"\n", - "dtmc = stormvogel.model.new_dtmc(\"Die\")\n", - "\n", - "init = dtmc.get_initial_state()\n", - "\n", - "# From the initial state, add the transition to 6 new states with probability 1/6th.\n", - "init.set_transitions(\n", - " [(1 / 6, dtmc.new_state(f\"rolled{i}\", {\"rolled\": i})) for i in range(1, 7)]\n", - ")\n", - "dtmc.add_self_loops()\n", - "vis = stormvogel.show.show(dtmc, show_editor=True)" - ] - }, - { - "cell_type": "code", - "execution_count": 3, - "metadata": {}, - "outputs": [ + }, { - "ename": "RuntimeError", - "evalue": "This model has states with no outgoing transitions.\nUse the add_self_loops() function to add self loops to all states with no outgoing transition.", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[3], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m stormpy_dtmc \u001b[38;5;241m=\u001b[39m \u001b[43mstormvogel\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmapping\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mstormvogel_to_stormpy\u001b[49m\u001b[43m(\u001b[49m\u001b[43mdtmc\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/git/stormpy/stormvogel/stormvogel/mapping.py:299\u001b[0m, in \u001b[0;36mstormvogel_to_stormpy\u001b[0;34m(model)\u001b[0m\n\u001b[1;32m 295\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mRuntimeError\u001b[39;00m(\n\u001b[1;32m 296\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mThis type of model is not yet supported for this action\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 297\u001b[0m )\n\u001b[1;32m 298\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m--> 299\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mRuntimeError\u001b[39;00m(\n\u001b[1;32m 300\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mThis model has states with no outgoing transitions.\u001b[39m\u001b[38;5;130;01m\\n\u001b[39;00m\u001b[38;5;124mUse the add_self_loops() function to add self loops to all states with no outgoing transition.\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 301\u001b[0m )\n", - "\u001b[0;31mRuntimeError\u001b[0m: This model has states with no outgoing transitions.\nUse the add_self_loops() function to add self loops to all states with no outgoing transition." - ] - } - ], - "source": [ - "stormpy_dtmc = stormvogel.mapping.stormvogel_to_stormpy(dtmc)" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [] - }, - 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"name": "stdout", + "output_type": "stream", + "text": [ + "Stormvogel succesfully started the internal communication server, but could not receive the result of a test request.\n", + "Stormvogel is still usable without this, but you will not be able to save node positions in a layout json file.\n", + "1) Restart the kernel and re-run.\n", + "2) Is the port 127.0.0.1:8889 (from the machine where jupyterlab runs) available?\n", + "If you are working remotely, it might help to forward this port. For example: 'ssh -N -L 8889:127.0.0.1:8889 YOUR_SSH_CONFIG_NAME'.\n", + "3) You might also want to consider changing stormvogel.communication_server.localhost_address to the IPv6 loopback address if you are using IPv6.\n", + "If you cannot get the server to work, set stormvogel.communication_server.enable_server to false and re-run. This will speed up stormvogel and ignore this message.\n", + "Please contact the stormvogel developpers if you keep running into issues.\n" + ] + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "d84720b130cd44b59fc1ba5d10e5a5ef", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "HBox(children=(Output(), Output()))" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "# Create a new model with the name \"Die\"\n", + "dtmc = stormvogel.model.new_dtmc(\"Die\")\n", + "\n", + "init = dtmc.get_initial_state()\n", + "\n", + "# From the initial state, add the transition to 6 new states with probability 1/6th.\n", + "init.set_transitions(\n", + " [(1 / 6, dtmc.new_state(f\"rolled{i}\", {\"rolled\": i})) for i in range(1, 7)]\n", + ")\n", + "dtmc.add_self_loops()\n", + "vis = stormvogel.show.show(dtmc, show_editor=True)" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:49.555785Z", + "iopub.status.busy": "2024-10-03T08:06:49.555709Z", + "iopub.status.idle": "2024-10-03T08:06:49.558214Z", + "shell.execute_reply": "2024-10-03T08:06:49.557529Z" + } + }, + "outputs": [], + "source": [ + "stormpy_dtmc = stormvogel.mapping.stormvogel_to_stormpy(dtmc)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.6" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "state": { + "001a54a5d7764652940e8d34bc6055f0": { + "model_module": "@jupyter-widgets/controls", + "model_module_version": "2.0.0", + "model_name": "HTMLModel", + "state": { + "_dom_classes": [], + "_model_module": "@jupyter-widgets/controls", + "_model_module_version": "2.0.0", + "_model_name": "HTMLModel", + "_view_count": null, + "_view_module": "@jupyter-widgets/controls", + "_view_module_version": "2.0.0", + "_view_name": "HTMLView", + "description": "", + "description_allow_html": false, + "layout": "IPY_MODEL_76021091c2d942f595c906a4198eded8", + "placeholder": "\u200b", + "style": "IPY_MODEL_969d1a1cc9e14e9ca4683674b40c43ca", + "tabbable": null, + "tooltip": null, + "value": "

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b/docs/getting_started/mdp.ipynb @@ -2,8 +2,15 @@ "cells": [ { "cell_type": "code", - "execution_count": 14, - "metadata": {}, + "execution_count": 1, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:06.970273Z", + "iopub.status.busy": "2024-10-03T08:06:06.970007Z", + "iopub.status.idle": "2024-10-03T08:06:07.146648Z", + "shell.execute_reply": "2024-10-03T08:06:07.146366Z" + } + }, "outputs": [], "source": [ "from stormvogel import visualization, mapping, result, show\n", @@ -12,16 +19,23 @@ }, { "cell_type": "code", - "execution_count": 15, - "metadata": {}, + "execution_count": 2, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.148795Z", + "iopub.status.busy": "2024-10-03T08:06:07.148678Z", + "iopub.status.idle": "2024-10-03T08:06:07.155809Z", + "shell.execute_reply": "2024-10-03T08:06:07.155553Z" + } + }, "outputs": [ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 15, + "execution_count": 2, "metadata": {}, "output_type": "execute_result" } @@ -125,8 +139,15 @@ }, { "cell_type": "code", - "execution_count": 16, - "metadata": {}, + "execution_count": 3, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.175749Z", + "iopub.status.busy": "2024-10-03T08:06:07.175618Z", + "iopub.status.idle": "2024-10-03T08:06:07.197932Z", + "shell.execute_reply": "2024-10-03T08:06:07.197677Z" + } + }, "outputs": [], "source": [ "leader_model = stormpy.build_model(leader)\n", @@ -135,8 +156,15 @@ }, { "cell_type": "code", - "execution_count": 17, - "metadata": {}, + "execution_count": 4, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.199303Z", + "iopub.status.busy": "2024-10-03T08:06:07.199218Z", + "iopub.status.idle": "2024-10-03T08:06:07.201195Z", + "shell.execute_reply": "2024-10-03T08:06:07.200969Z" + } + }, "outputs": [ { "name": "stdout", @@ -155,7 +183,7 @@ "Choice Labels: \tnone\n", "-------------------------------------------------------------- \n", "\n", - "['__class__', '__delattr__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '_as_sparse_ctmc', '_as_sparse_dtmc', '_as_sparse_exact_dtmc', '_as_sparse_exact_mdp', '_as_sparse_imdp', '_as_sparse_ma', '_as_sparse_mdp', '_as_sparse_pctmc', '_as_sparse_pdtmc', '_as_sparse_pma', '_as_sparse_pmdp', '_as_sparse_pomdp', '_as_sparse_ppomdp', '_as_symbolic_ctmc', '_as_symbolic_dtmc', '_as_symbolic_ma', '_as_symbolic_mdp', '_as_symbolic_pctmc', '_as_symbolic_pdtmc', '_as_symbolic_pma', '_as_symbolic_pmdp', 'add_reward_model', 'apply_scheduler', 'backward_transition_matrix', 'choice_labeling', 'choice_origins', 'get_choice_index', 'get_nr_available_actions', 'get_reward_model', 'has_choice_labeling', 'has_choice_origins', 'has_parameters', 'has_reward_model', 'has_state_valuations', 'initial_states', 'initial_states_as_bitvector', 'is_discrete_time_model', 'is_exact', 'is_nondeterministic_model', 'is_partially_observable', 'is_sink_state', 'is_sparse_model', 'is_symbolic_model', 'labeling', 'labels_state', 'model_type', 'nondeterministic_choice_indices', 'nr_choices', 'nr_states', 'nr_transitions', 'reduce_to_state_based_rewards', 'reward_models', 'set_initial_states', 'state_valuations', 'states', 'supports_parameters', 'supports_uncertainty', 'to_dot', 'transition_matrix']\n" + "['__class__', '__delattr__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '_as_sparse_ctmc', '_as_sparse_dtmc', '_as_sparse_exact_dtmc', '_as_sparse_exact_mdp', '_as_sparse_imdp', '_as_sparse_ma', '_as_sparse_mdp', '_as_sparse_pctmc', '_as_sparse_pdtmc', '_as_sparse_pma', '_as_sparse_pmdp', '_as_sparse_pomdp', '_as_sparse_ppomdp', '_as_sparse_smg', '_as_symbolic_ctmc', '_as_symbolic_dtmc', '_as_symbolic_ma', '_as_symbolic_mdp', '_as_symbolic_pctmc', '_as_symbolic_pdtmc', '_as_symbolic_pma', '_as_symbolic_pmdp', 'add_reward_model', 'apply_scheduler', 'backward_transition_matrix', 'choice_labeling', 'choice_origins', 'get_choice_index', 'get_nr_available_actions', 'get_reward_model', 'has_choice_labeling', 'has_choice_origins', 'has_parameters', 'has_reward_model', 'has_state_valuations', 'initial_states', 'initial_states_as_bitvector', 'is_discrete_time_model', 'is_exact', 'is_nondeterministic_model', 'is_partially_observable', 'is_sink_state', 'is_sparse_model', 'is_symbolic_model', 'labeling', 'labels_state', 'model_type', 'nondeterministic_choice_indices', 'nr_choices', 'nr_states', 'nr_transitions', 'reduce_to_state_based_rewards', 'reward_models', 'set_initial_states', 'state_valuations', 'states', 'supports_parameters', 'supports_uncertainty', 'to_dot', 'transition_matrix']\n" ] } ], @@ -167,8 +195,15 @@ }, { "cell_type": "code", - "execution_count": 18, - "metadata": {}, + "execution_count": 5, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.202515Z", + "iopub.status.busy": "2024-10-03T08:06:07.202434Z", + "iopub.status.idle": "2024-10-03T08:06:07.204130Z", + "shell.execute_reply": "2024-10-03T08:06:07.203913Z" + } + }, "outputs": [], "source": [ "prop = stormpy.parse_properties(\"Rmax=? [F \\\"elected\\\"]\", leader)" @@ -176,8 +211,15 @@ }, { "cell_type": "code", - "execution_count": 19, - "metadata": {}, + "execution_count": 6, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.205373Z", + "iopub.status.busy": "2024-10-03T08:06:07.205295Z", + "iopub.status.idle": "2024-10-03T08:06:07.207394Z", + "shell.execute_reply": "2024-10-03T08:06:07.206992Z" + } + }, "outputs": [], "source": [ "stormpy_result = stormpy.model_checking(leader_model, prop[0], extract_scheduler=True)" @@ -185,8 +227,15 @@ }, { "cell_type": "code", - "execution_count": 20, - "metadata": {}, + "execution_count": 7, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.209102Z", + "iopub.status.busy": "2024-10-03T08:06:07.209008Z", + "iopub.status.idle": "2024-10-03T08:06:07.210629Z", + "shell.execute_reply": "2024-10-03T08:06:07.210414Z" + } + }, "outputs": [ { "name": "stdout", @@ -202,8 +251,15 @@ }, { "cell_type": "code", - "execution_count": 21, - "metadata": {}, + "execution_count": 8, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.211896Z", + "iopub.status.busy": "2024-10-03T08:06:07.211827Z", + "iopub.status.idle": "2024-10-03T08:06:07.213567Z", + "shell.execute_reply": "2024-10-03T08:06:07.213359Z" + } + }, "outputs": [ { "name": "stdout", @@ -215,9 +271,9 @@ "Transitions: \t56\n", "Reward Models: rounds\n", "State Labels: \t3 labels\n", - " * elected -> 0 item(s)\n", - " * init -> 1 item(s)\n", " * deadlock -> 3 item(s)\n", + " * init -> 1 item(s)\n", + " * elected -> 0 item(s)\n", "Choice Labels: \tnone\n", "-------------------------------------------------------------- \n", "\n" @@ -232,8 +288,15 @@ }, { "cell_type": "code", - "execution_count": 22, - "metadata": {}, + "execution_count": 9, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.214711Z", + "iopub.status.busy": "2024-10-03T08:06:07.214640Z", + "iopub.status.idle": "2024-10-03T08:06:07.217135Z", + "shell.execute_reply": "2024-10-03T08:06:07.216935Z" + } + }, "outputs": [ { "name": "stdout", @@ -254,8 +317,14 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": 10, "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.218326Z", + "iopub.status.busy": "2024-10-03T08:06:07.218240Z", + "iopub.status.idle": "2024-10-03T08:06:07.248079Z", + "shell.execute_reply": "2024-10-03T08:06:07.247857Z" + }, "scrolled": true }, "outputs": [], @@ -267,104 +336,25819 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": 11, "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:07.249361Z", + "iopub.status.busy": "2024-10-03T08:06:07.249290Z", + "iopub.status.idle": "2024-10-03T08:06:17.727976Z", + "shell.execute_reply": "2024-10-03T08:06:17.727757Z" + }, "scrolled": true }, "outputs": [ { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "bccaeb3962e24a84a838417dd4210d04", + "model_id": 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+ ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Stormvogel succesfully started the internal communication server, but could not receive the result of a test request.\n", + "Stormvogel is still usable without this, but you will not be able to save node positions in a layout json file.\n", + "1) Restart the kernel and re-run.\n", + "2) Is the port 127.0.0.1:8890 (from the machine where jupyterlab runs) available?\n", + "If you are working remotely, it might help to forward this port. For example: 'ssh -N -L 8890:127.0.0.1:8890 YOUR_SSH_CONFIG_NAME'.\n", + "3) You might also want to consider changing stormvogel.communication_server.localhost_address to the IPv6 loopback address if you are using IPv6.\n", + "If you cannot get the server to work, set stormvogel.communication_server.enable_server to false and re-run. This will speed up stormvogel and ignore this message.\n", + "Please contact the stormvogel developpers if you keep running into issues.\n" + ] + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "0336e81cfb924361964758e7ef1cdf17", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "HBox(children=(Output(), Output()))" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "import stormvogel.layout\n", + "\n", + "vis1 = show.show(stormvogel_model, stormvogel_result, layout=stormvogel.layout.EXPLORE())" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:06:17.788203Z", + "iopub.status.busy": "2024-10-03T08:06:17.788115Z", + "iopub.status.idle": "2024-10-03T08:06:17.795418Z", + "shell.execute_reply": "2024-10-03T08:06:17.795171Z" + } + }, + "outputs": [], + "source": [ + "induced_dtmc = stormvogel_result.generate_induced_dtmc()" + 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"output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Stormvogel succesfully started the internal communication server, but could not receive the result of a test request.\n", + "Stormvogel is still usable without this, but you will not be able to save node positions in a layout json file.\n", + "1) Restart the kernel and re-run.\n", + "2) Is the port 127.0.0.1:8889 (from the machine where jupyterlab runs) available?\n", + "If you are working remotely, it might help to forward this port. For example: 'ssh -N -L 8889:127.0.0.1:8889 YOUR_SSH_CONFIG_NAME'.\n", + "3) You might also want to consider changing stormvogel.communication_server.localhost_address to the IPv6 loopback address if you are using IPv6.\n", + "If you cannot get the server to work, set stormvogel.communication_server.enable_server to false and re-run. This will speed up stormvogel and ignore this message.\n", + "Please contact the stormvogel developpers if you keep running into issues.\n" + ] + }, { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "e8dbbb357f754f9986e1beec03e884a0", + "model_id": "c2b9fda9e1354d6ca57827715ca601ed", "version_major": 2, "version_minor": 0 }, @@ -82,9 +715,16 @@ }, { "cell_type": "code", - "execution_count": 120, + "execution_count": 2, "id": "8807425f-1d69-4522-9077-b902c90bd0b2", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:08.701868Z", + "iopub.status.busy": "2024-10-03T08:07:08.701716Z", + "iopub.status.idle": "2024-10-03T08:07:08.706787Z", + "shell.execute_reply": "2024-10-03T08:07:08.706363Z" + } + }, "outputs": [], "source": [ "def naive_value_iteration(model, steps, starting_state):\n", @@ -122,9 +762,16 @@ }, { "cell_type": "code", - "execution_count": 123, + "execution_count": 3, "id": "86b53e1d-2cdb-423e-8dcf-3dacd9e8eb75", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:08.710808Z", + "iopub.status.busy": "2024-10-03T08:07:08.710149Z", + "iopub.status.idle": "2024-10-03T08:07:09.052392Z", + "shell.execute_reply": "2024-10-03T08:07:09.052173Z" + } + }, "outputs": [ { "data": { @@ -194,7 +841,827 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.2" + "version": "3.12.6" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "state": { + "0a4470793a704b388de44c9e5f08cab8": { + "model_module": "@jupyter-widgets/output", + "model_module_version": "1.0.0", + "model_name": "OutputModel", + "state": { + "_dom_classes": [], + "_model_module": "@jupyter-widgets/output", + "_model_module_version": "1.0.0", + "_model_name": "OutputModel", + "_view_count": null, + "_view_module": "@jupyter-widgets/output", + "_view_module_version": "1.0.0", + "_view_name": 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"object_position": null, + "order": null, + "overflow": null, + "padding": null, + "right": null, + "top": null, + "visibility": null, + "width": null + } + } + }, + "version_major": 2, + "version_minor": 0 + } } }, "nbformat": 4, diff --git a/docs/getting_started/prism.ipynb b/docs/getting_started/prism.ipynb index 9cd4f90..5b16cf5 100644 --- a/docs/getting_started/prism.ipynb +++ b/docs/getting_started/prism.ipynb @@ -10,9 +10,16 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 1, "id": "2552891a-8d96-4c77-aa97-0a1ddf5bc02b", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.392215Z", + "iopub.status.busy": "2024-10-03T08:07:22.391724Z", + "iopub.status.idle": "2024-10-03T08:07:22.548426Z", + "shell.execute_reply": "2024-10-03T08:07:22.548205Z" + } + }, "outputs": [], "source": [ "from stormvogel import visualization, mapping, result, show\n", @@ -29,17 +36,24 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 2, "id": "a00a5906-af87-4fb8-8f5f-ad5690129d33", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.552037Z", + "iopub.status.busy": "2024-10-03T08:07:22.551932Z", + "iopub.status.idle": "2024-10-03T08:07:22.557160Z", + "shell.execute_reply": "2024-10-03T08:07:22.556949Z" + } + }, "outputs": [ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 3, + "execution_count": 2, "metadata": {}, "output_type": "execute_result" } @@ -124,9 +138,16 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 3, "id": "049cb9f5-2e69-4092-982f-be446aee0012", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.558437Z", + "iopub.status.busy": "2024-10-03T08:07:22.558353Z", + "iopub.status.idle": "2024-10-03T08:07:22.572454Z", + "shell.execute_reply": "2024-10-03T08:07:22.572184Z" + } + }, "outputs": [], "source": [ "nand_model = stormpy.build_model(nand)" @@ -142,9 +163,16 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "id": "336c76a2", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.573774Z", + "iopub.status.busy": "2024-10-03T08:07:22.573695Z", + "iopub.status.idle": "2024-10-03T08:07:22.575600Z", + "shell.execute_reply": "2024-10-03T08:07:22.575409Z" + } + }, "outputs": [], "source": [ "prop = stormpy.parse_properties(\"P=? [F \\\"target\\\"]\", nand)" @@ -160,9 +188,16 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 5, "id": "eb11837e-5c59-42d3-97ed-cedb76eca63c", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.576828Z", + "iopub.status.busy": "2024-10-03T08:07:22.576757Z", + "iopub.status.idle": "2024-10-03T08:07:22.578368Z", + "shell.execute_reply": "2024-10-03T08:07:22.578140Z" + } + }, "outputs": [ { "name": "stdout", @@ -174,12 +209,12 @@ "Transitions: \t243\n", "Reward Models: (default)\n", "State Labels: \t8 labels\n", + " * deadlock -> 0 item(s)\n", " * init -> 1 item(s)\n", " * whichx -> 42 item(s)\n", + " * target -> 1 item(s)\n", " * selection -> 39 item(s)\n", " * nextnand -> 42 item(s)\n", - " * deadlock -> 0 item(s)\n", - " * target -> 1 item(s)\n", " * gate -> 52 item(s)\n", " * end -> 3 item(s)\n", "Choice Labels: \tnone\n", @@ -194,9 +229,16 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 6, "id": "58dc3f9f", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.580046Z", + "iopub.status.busy": "2024-10-03T08:07:22.579974Z", + "iopub.status.idle": "2024-10-03T08:07:22.581546Z", + "shell.execute_reply": "2024-10-03T08:07:22.581337Z" + } + }, "outputs": [], "source": [ "stormpy_result = stormpy.model_checking(nand_model, prop[0])" @@ -204,9 +246,16 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 7, "id": "7f568f16", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:22.582752Z", + "iopub.status.busy": "2024-10-03T08:07:22.582678Z", + "iopub.status.idle": "2024-10-03T08:07:22.584284Z", + "shell.execute_reply": "2024-10-03T08:07:22.584079Z" + } + }, "outputs": [ { "name": "stdout", @@ -230,9 +279,16 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 8, "id": "4b51450e", - "metadata": {}, + "metadata": { + "execution": { + 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For example: 'ssh -N -L 8889:127.0.0.1:8889 YOUR_SSH_CONFIG_NAME'.\n", + "3) You might also want to consider changing stormvogel.communication_server.localhost_address to the IPv6 loopback address if you are using IPv6.\n", + "If you cannot get the server to work, set stormvogel.communication_server.enable_server to false and re-run. This will speed up stormvogel and ignore this message.\n", + "Please contact the stormvogel developpers if you keep running into issues.\n" + ] + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "b0dbb4dab7a243b9b83baf66a26d01e3", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "HBox(children=(Output(), Output()))" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "vis = show.show(stormvogel_model, stormvogel_result)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "548b0251-91fe-4184-9a25-6688a0f0366b", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", 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+12,14 @@ "cell_type": "code", "execution_count": 1, "id": "e924f3a4", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.154145Z", + "iopub.status.busy": "2024-10-03T08:07:41.154023Z", + "iopub.status.idle": "2024-10-03T08:07:41.316839Z", + "shell.execute_reply": "2024-10-03T08:07:41.316610Z" + } + }, "outputs": [], "source": [ "import stormvogel.model\n", @@ -33,7 +40,14 @@ "cell_type": "code", "execution_count": 2, "id": "1f2120a8", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.319496Z", + "iopub.status.busy": "2024-10-03T08:07:41.319384Z", + "iopub.status.idle": "2024-10-03T08:07:41.321658Z", + "shell.execute_reply": "2024-10-03T08:07:41.321305Z" + } + }, "outputs": [], "source": [ "mdp = stormvogel.model.new_mdp(\"Monty Hall\")\n", @@ -53,7 +67,14 @@ "cell_type": "code", "execution_count": 3, "id": "1143b6c0", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.323834Z", + "iopub.status.busy": "2024-10-03T08:07:41.323286Z", + "iopub.status.idle": "2024-10-03T08:07:41.326106Z", + "shell.execute_reply": "2024-10-03T08:07:41.325809Z" + } + }, "outputs": [], "source": [ "init.set_transitions([\n", @@ -74,7 +95,14 @@ "cell_type": "code", "execution_count": 4, "id": "64bfb789", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.327849Z", + "iopub.status.busy": "2024-10-03T08:07:41.327632Z", + "iopub.status.idle": "2024-10-03T08:07:41.330009Z", + "shell.execute_reply": "2024-10-03T08:07:41.329727Z" + } + }, "outputs": [], "source": [ "studied.set_transitions([\n", @@ -95,7 +123,14 @@ "cell_type": "code", "execution_count": 5, "id": "89d1d749", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.331655Z", + "iopub.status.busy": "2024-10-03T08:07:41.331348Z", + "iopub.status.idle": "2024-10-03T08:07:41.333216Z", + "shell.execute_reply": "2024-10-03T08:07:41.332980Z" + } + }, "outputs": [], "source": [ "not_studied.set_transitions([\n", @@ -116,7 +151,14 @@ "cell_type": "code", "execution_count": 6, "id": "2f8fb42e", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.334556Z", + "iopub.status.busy": "2024-10-03T08:07:41.334455Z", + "iopub.status.idle": "2024-10-03T08:07:41.335992Z", + "shell.execute_reply": "2024-10-03T08:07:41.335683Z" + } + }, "outputs": [], "source": [ "pass_test.set_transitions([(1, end)])\n", @@ -135,7 +177,14 @@ "cell_type": "code", "execution_count": 7, "id": "bfcbb7fa", - "metadata": {}, + "metadata": { + "execution": { + "iopub.execute_input": "2024-10-03T08:07:41.337269Z", + "iopub.status.busy": "2024-10-03T08:07:41.337188Z", + "iopub.status.idle": "2024-10-03T08:07:41.339069Z", + "shell.execute_reply": "2024-10-03T08:07:41.338833Z" + } + }, "outputs": [], "source": [ "reward_model = mdp.add_rewards(\"R\")\n", @@ -154,14 +203,21 @@ }, { 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For example: 'ssh -N -L 8889:127.0.0.1:8889 YOUR_SSH_CONFIG_NAME'.\n", + "3) You might also want to consider changing stormvogel.communication_server.localhost_address to the IPv6 loopback address if you are using IPv6.\n", + "If you cannot get the server to work, set stormvogel.communication_server.enable_server to false and re-run. This will speed up stormvogel and ignore this message.\n", + "Please contact the stormvogel developpers if you keep running into issues.\n" + ] + }, + { + "data": { + "application/vnd.jupyter.widget-view+json": { + "model_id": "6d4e09cbf30e485cb5002248de3db411", + "version_major": 2, + "version_minor": 0 + }, + "text/plain": [ + "HBox(children=(Output(), Output()))" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "vis = show(mdp, show_editor=True, layout=Layout(\"layouts/pinkgreen.json\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "d4fd0009-1632-4318-b4f4-2cc764666295", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + 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name: Run tests run: poetry run pytest + - name: List kernels + run: poetry run jupyter kernelspec list + - name: Glob notebooks in docs folder uses: tj-actions/glob@v22 id: glob From f45bd769da1627bf17540a072288bada3ae7eada Mon Sep 17 00:00:00 2001 From: YouGuessedMyName Date: Sat, 12 Oct 2024 14:37:15 +0200 Subject: [PATCH 5/6] poetry.lock and pyproject.toml from main --- poetry.lock | 4 ---- 1 file changed, 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index c88fc47..3082d79 100644 --- a/poetry.lock +++ b/poetry.lock @@ -3436,8 +3436,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.11" -<<<<<<< HEAD -content-hash = "29b618b72d896c1771447a013f667f81c074b2edbec6f3dfaa907803a0234d52" -======= content-hash = "65bbdf4a8a22412ec0f95ebe412b3ec8a4821be723e154dfa0a80c8dc73ccc46" ->>>>>>> main From 78ed16f5bd2abbe67be8442450bdece3602b0836 Mon Sep 17 00:00:00 2001 From: YouGuessedMyName Date: Sat, 12 Oct 2024 14:51:24 +0200 Subject: [PATCH 6/6] fix workflows --- .github/workflows/docs.yml | 8 ++------ .github/workflows/test.yml | 6 ------ 2 files changed, 2 insertions(+), 12 deletions(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 22e254d..1189a81 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -4,6 +4,8 @@ on: # Runs on pushes targeting the default branch push: branches: [main] + pull_request: + types: [opened, reopened] concurrency: group: ${{ github.workflow }}-${{ github.ref_name }} @@ -58,15 +60,9 @@ jobs: files: | docs/**/*.ipynb -<<<<<<< HEAD - - name: Run documentation notebooks - run: | - poetry run jupyter nbconvert --execute --ExecutePreprocessor.kernel_name=python3 --to notebook --inplace ${{ steps.glob.outputs.paths }} -======= # - name: Run documentation notebooks # run: | # poetry run jupyter nbconvert --execute --to notebook --inplace ${{ steps.glob.outputs.paths }} ->>>>>>> main - name: Generate docs working-directory: docs/ diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index de3b41a..719edf7 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -55,12 +55,6 @@ jobs: files: | docs/**/*.ipynb -<<<<<<< HEAD - - name: Run documentation notebooks - run: | - poetry run jupyter nbconvert --execute --ExecutePreprocessor.kernel_name=python3 --to notebook --inplace ${{ steps.glob.outputs.paths }} -======= # - name: Run documentation notebooks # run: | # poetry run jupyter nbconvert --execute --to notebook --inplace ${{ steps.glob.outputs.paths }} ->>>>>>> main