The MoBIE Fiji viewer is a Fiji plugin allowing easy exploration of big multi-modal images and associated tabular data.
Main Features:
- Smooth browsing of large image data thanks to BigDataViewer
- Overlay many types of images in the same coordinate system (e.g. electron microscopy, light microscopy, segmentations...)
- Explore tabular data interactively alongside the images they're derived from
- Easy sharing with colleagues (no need to download the raw images!)
- Easy sharing of points of interest in your data e.g. create bookmarks showing selected
- Image registration directly in MoBIE views, images and tables for your colleagues to explore
- ... and more!
Get started with the tutorials below:
- Getting Started
- Exploring segmentations and tables
- Locations and views
- Using BigVolumeViewer
- Importing and exporting tables
- Creating your own views
- Volume Registration tutorial
- Annotation tutorial
- Grid views & image region tables
- More features
Most of the examples in the tutorial are from Whole-body integration of gene expression and single-cell morphology, where MoBIE is used to visualize a EM volume of a Platynereis dumerilii larva, derived segmentations and gene expression profiles. MoBIE supports several other data modalities and combinations thereof, for example:
- Correlative light and electron microscopy
- High-throughput microscopy
- 3D light microscopy timeseries
- Spatial transcriptomics
The MoBIE functionality is also demonstrated in a series of videos:
- MoBIE core functionality
- Creating MoBIE projects in Fiji
- Image Registration in MoBIE
- Interactive user annotation
- Timeseries in MoBIE
- Spatial Transcriptomics data in MoBIE
There is also a NEuBIAS BigData Seminar introducing MoBIE.
If you use MoBIE in your research please cite the MoBIE Nature Methods publication.
For questions or issues about MoBIE, please open a topic in the image.sc forum using the tag mobie. For specific technical issues or bugs, you can also open an issue on github.