3.11.x Fix missing docs compilation

Replace sphinx-argparse with sphinxcontrib-autoprogram: docs: passing

3.10.x Benasque 2022 edition ;-)

Some new tests in Colab:
https://colab.research.google.com/drive/1rcPz7ZLWpn-hbfJo8hpz6ZuMGiGGmKeW?usp=sharing

Trx: is back to make a nice interface to play around

opt: rasp in x86

3.8.13

rna_calc_inf: refactor, fix multiprocessing + tqdm (replace progressbar2)

3.8.12 Fix pip

Fix pip, include files that should be included
Fix #130 #126

3.8.11 Remove triplexiblity (for now) + bonus

triplexiblity: remove, for now, it's messing up the repo
(61c738b)
bonus, 10y old plugin for RASP in PYMOL ;-) [coloring according to RASP predicted quality of RNA]

3.8.10

Lots of changes for (revision) of https://rna-tools.online in NAR

plus stdout changes:

• rna_calc_rmsd.py: remove # from prints
• rna_x3dna.py: comment out p.get_secstruc()

df (dataframe)

• refactor and and add rna_df_merge.csv
• misc/rna_merge_two_dfs.py: remove id (if exists)

mq (mqapRNA)

• ClashScore: small update
• FARFAR2/FARFAR2.py: refactor
• Dfire/Dfire.py: up doc

trx (triplexibility)

refactor, small changes

• trx-mutget-t1-1.py
• add x4 mode for MD/min of t1-1
• add trxdb for scoring - trx.py & trx_score.py
• triplexibility/db/gendb.py
• trx_score_growth.py: add

shell_rc.sh

Init a script to share some shell hacks among my machines.

rna_pdb_toolsx.py

• some fix on extr
• add --here fun to --rpr
• mutate also works with lower case chain names, a,b,c
• config for PYMOL, fix it at aws
• prototype --here option, for quick actions

rna_rosetta/ refactor

• rna_rosetta_n.py: add -0 (for missing file show 0), used in scripts
• rna_rosetta_get_score.py: collect and sort score
• rna_rosetta_silent_split.py: add
• rna_rosetta_silent_random.py: add
• rna_rosetta_silent_file_sort_and_select.py: fix naming, rna_rosetta* / THIS IS NO MY CODE, I FIXED SO IT WORKS ON MY MAC @mmagnus +IT'S A PART OF ROSETTA RNA-TOOL
• rna_rosetta_extract.py: add lazy shortcut

rna_clarna2graph.py

add and improve

3.8.6

Minior updates on triplexibility, PyMOL4Spliceosome.py, PyMOL4RNA.py, pymol_preview_generator.py

3.8.5

• e142af9 2022-02-21 pymol_preview_generator.py: diff modes for pdb and pse, for pdb check size
• 593abbe 2022-02-11 PyMOL4RNA.py: fix edge with orient
• aa998b7 2022-02-08 fix trx_score.py

Full Changelog: 3.8.4...3.8.5

3.8.4

Fix readme at pypi

3.8.3

Fix (upload) to pypi