From 4263cbcb9a6eac7bfe4a45445602cc097b64c120 Mon Sep 17 00:00:00 2001
From: mmagnus <mag_dex@o2.pl>
Date: Fri, 21 Jan 2022 17:46:38 +0000
Subject: [PATCH] web: diffpdb add check box for using --names

---
 rna_tools/tools/webserver-engine/app/templates/diffpdb.html | 5 +++++
 rna_tools/tools/webserver-engine/app/views.py               | 6 +++++-
 2 files changed, 10 insertions(+), 1 deletion(-)

diff --git a/rna_tools/tools/webserver-engine/app/templates/diffpdb.html b/rna_tools/tools/webserver-engine/app/templates/diffpdb.html
index 57034fff1..84a465fd8 100644
--- a/rna_tools/tools/webserver-engine/app/templates/diffpdb.html
+++ b/rna_tools/tools/webserver-engine/app/templates/diffpdb.html
@@ -51,6 +51,7 @@
     function go() {
         $.ajax({
             url: "/run/diffpdb/{{ j.job_id }}",
+	    data: { names: $('#names').is(':checked')},
             success: function(d) {
                 $("#log_txt").html(d['log']);
                 if (d['reload']==true){
@@ -81,6 +82,10 @@ <h2>diffpdb</h2>
     </div>
 </form>
 
+<label class="checkbox" type="checkbox" >
+      <input type="checkbox" id="names"> use atom names and residues only
+</label>
+
     <pre><div id="log_txt" class='log'>{{ log | safe }}</div></pre>
     
 <p>The raw output files for each step of the pipeline can be found <a href="{% url 'download_project_dir' job_id=j.job_id %}">here</a></p>
diff --git a/rna_tools/tools/webserver-engine/app/views.py b/rna_tools/tools/webserver-engine/app/views.py
index 178416649..c276f9460 100644
--- a/rna_tools/tools/webserver-engine/app/views.py
+++ b/rna_tools/tools/webserver-engine/app/views.py
@@ -350,9 +350,13 @@ def run(request, tool, job_id):
         files = glob.glob(job_dir + "/*pdb")
         files.sort(key=os.path.getmtime)
         files = [os.path.basename(f) for f in files]
+        r = request.GET['names'].strip()
+        opt = ''
+        if r == 'true':
+            opt = ' --names '
         with open(job_dir + '/run.sh', 'w') as f:
              f.write("""
-diffpdb.py --method diff %s %s &> log.txt \n
+diffpdb.py """ + opt + """ --method diff %s %s &> log.txt \n
 """ % (files[0], files[1]))
              
     if tool == 'extract':