add BART survival learner #1851
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| # r cmd check workflow of the mlr3 ecosystem v0.3.1 | |
| # https://github.com/mlr-org/actions | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled' | |
| required: false | |
| default: false | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 4 * * 1' | |
| name: RCMD Check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: RCMD Check (${{ matrix.config.os }} (${{ matrix.config.r }})) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-20.04, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'devel'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| with: | |
| limit-access-to-actor: true | |
| - name: Install Python | |
| run: | | |
| pak::pkg_install('reticulate') | |
| reticulate::install_miniconda(force = TRUE) | |
| reticulate::use_condaenv('r-reticulate') | |
| install.packages('keras') | |
| reticulate::py_install("numpy") | |
| survivalmodels::install_pycox(pip = TRUE, install_torch = TRUE) | |
| survivalmodels::install_keras(pip = TRUE, install_tensorflow = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 |