Step not tracking properly in yaml

[Cmheidelberg]

Describe the bug
Step doesnt increment correctly with mic commands. I thought I saw it move up to step 2 yesterday but testing for this issue I couldnt get it to increment past 1.

Expected behavior
Step should either increment with the commands

start > 1
trace > 2
inputs > 3
outputs > 4
configs > 5
parameters > 6
wrapper > 7 
run > 8
upload > 9

Or we could remove the "step" and just track "last_command" or maybe an array of "completed_commands".

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