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Different batch sizes lead to different evalution results for LongVIT #107

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HHHedo opened this issue May 14, 2024 · 0 comments
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@HHHedo
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HHHedo commented May 14, 2024

Hi,
Thanks for your great work.
When I use the LongVIT for survival prediction, I find that different batch sizes will lead to different C-index results.
After I print the risk for each person, I also find that some risks are different.
The followings are some examples

bs = 8 bs =1 bs =2
TCGA-06-0168 -1.2465172 TCGA-06-0168 -1.2457247 TCGA-06-0168 -1.2465172
TCGA-06-0645 -3.1927319 TCGA-06-0645 -3.193125 TCGA-06-0645 -3.1927319
TCGA-06-0646 -2.8353539 TCGA-06-0646 -2.8353539 TCGA-06-0646 -2.8353539
TCGA-06-0750 -0.9242315 TCGA-06-0750 -0.924083 TCGA-06-0750 -0.9242315
TCGA-06-5410 -1.7878933 TCGA-06-5410 -1.7888575 TCGA-06-5410 -1.7877667
TCGA-06-5411 -0.7950437 TCGA-06-5411 -0.7950437 TCGA-06-5411 -0.7950437
TCGA-06-5413 -0.8715491 TCGA-06-5413 -0.8715491 TCGA-06-5413 -0.87227124
TCGA-06-5856 -1.512358 TCGA-06-5856 -1.512358 TCGA-06-5856 -1.512358
TCGA-12-0618 -3.3228474 TCGA-12-0618 -3.3228474 TCGA-12-0618 -3.3228474
TCGA-12-0821 -3.0764904 TCGA-12-0821 -3.0764904 TCGA-12-0821 -3.0764904
TCGA-12-3653 -2.5728168 TCGA-12-3653 -2.5728168 TCGA-12-3653 -2.5728168
TCGA-19-2629 -2.5467625 TCGA-19-2629 -2.5467625 TCGA-19-2629 -2.5467625
TCGA-19-5960 -2.1180227 TCGA-19-5960 -2.1180227 TCGA-19-5960 -2.1180227
TCGA-26-1442 -1.2899182 TCGA-26-1442 -1.2899779 TCGA-26-1442 -1.2899182
TCGA-26-5133 -2.0898883 TCGA-26-5133 -2.0900764 TCGA-26-5133 -2.0894563
TCGA-27-1830 -1.2196785 TCGA-27-1830 -1.2196785 TCGA-27-1830 -1.2196785
TCGA-27-1831 -2.6002393 TCGA-27-1831 -2.599653 TCGA-27-1831 -2.599653

Looking forward to your help!

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