diff --git a/vignettes/mia_demo.Rmd b/vignettes/mia_demo.Rmd index b8023ca..148f039 100644 --- a/vignettes/mia_demo.Rmd +++ b/vignettes/mia_demo.Rmd @@ -26,19 +26,19 @@ Last modified: 12 August, 2024. ### Description -This workshop introduces the miaverse framework, a powerful tool within the -_SummarizedExperiment_ framework designed specifically for microbiome data -science. Participants will gain hands-on experience with the +This workshop introduces the _miaverse_, a _SummarizedExperiment_ +framework tailored for microbiome data science. Participants will gain +hands-on experience with the _TreeSummarizedExperiment_ class, which is central to the _miaverse_ -framework. The session will also cover how to utilize the methods available +framework. In this session, we will also learn how to utilize _miaverse_ methods and navigate the [Orchestrating Microbiome Analysis (OMA) online book](https://microbiome.github.io/OMA/docs/devel/) -for additional resources. +for additional resource. We will start with a brief overview of the framework, followed by an instructor-led live demonstration. The demonstration will showcase selected key features and functionalities of miaverse. After the demo, participant -will have time to discuss the framework, ask questions, and explore the tool +will have time to discuss the framework, ask questions, and explore the tools and methods covered. By the end of the workshop, attendees will have a understanding of how to @@ -47,9 +47,9 @@ well-prepared to further explore the framework independently. ### Pre-requisites -* Basic knowledge of R syntax +* Basic knowledge of R coding * Familiarity with Bioconductor -* Understanding of microbiome data science +* Understanding of microbiome research If your time allows, we recommend to spend some time to explore [Orchestrating Microbiome Analysis (OMA) online book](https://microbiome.github.io/OMA/docs/devel/). @@ -62,7 +62,7 @@ follow a demo from the [OMA online book](https://microbiome.github.io/OMA/docs/devel/pages/introductory_workflow.html), and participants will be guided through hands-on exercises. -To ensure a smooth experience, Bioconductor provides +Bioconductor provides [pre-installed virtual machines with all necessary packages](https://workshop.bioconductor.org/). These machines will allow participants to run the workshop exercises and follow along with the instructor. @@ -72,7 +72,7 @@ follow along with the instructor. In this workshop, we will focus on the usage of the [_mia_ package](https://bioconductor.org/packages/devel/bioc/html/mia.html), which is designed for microbiome data science. This package is part of the -Bioconductor project and provides essential tools for analyzing and visualizing +Bioconductor project and provides essential tools for analyzing microbiome data using the _SummarizedExperiment_ framework. ### Time outline @@ -156,4 +156,3 @@ Time for questions. You are also encouraged to explore and run examples from ```{r session_info} sessionInfo() ``` -