[feature] Add new interaction analysis API #502
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test and deploy | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - 'v[0-9]+.[0-9]+.[0-9]+' | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "windows-latest", "macos-latest"] | |
| python-version: ["3.8", "3.11"] | |
| runs-on: "${{matrix.os}}" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install additional dependencies | |
| run: | | |
| python -m pip install --upgrade pip cryptography | |
| pip install wheel numpy Cython biom-format | |
| - name: Install highspy via dev wheel | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| PYTHON_VERSION=${{ matrix.python-version }} | |
| PYTHON_VERSION=${PYTHON_VERSION//./} | |
| pip install .github/wheels/highspy-1.5.3-cp${PYTHON_VERSION}-cp${PYTHON_VERSION}-macosx_10_9_x86_64.whl | |
| - name: Install MICOM | |
| run: pip install -e . | |
| - name: install CPLEX | |
| run: pip install cplex | |
| - name: Lint | |
| run: | | |
| pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=89 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest --cov=micom --cov-report=xml | |
| - name: Upload to codecov | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9 | |
| uses: codecov/[email protected] | |
| release: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/[email protected] | |
| with: | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: "__token__" | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-packages | |
| path: dist/* | |
| - name: Create Release | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| artifacts: 'dist/*' | |
| body: | | |
| Please see https://micom-dev.github.io/micom/NEWS.html for the full release notes. | |
| draft: false | |
| prerelease: false |