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KojakSpectrumViewer

MS/MS spectral search results viewer. Applicable for any search results in pepXML. Specializes in cross-linked search results.

Install

The software works great, but this repo is a work in progress. Compilation may be a little rough. If all you know how to do is:

configure
make
make install

then maybe you should ask for help from someone who better knows their way around a computer. :)

Linux:

There is a Makefile, you can try to make right from the outset. Just be sure to do the following:

  1. Clone and compile the MSToolkit: https://github.com/mhoopmann/mstoolkit
  2. Install SDL and dev kit: https://www.libsdl.org/
  3. Install SDL_ttf and dev kit: https://www.libsdl.org/projects/SDL_ttf/
  4. Install PNG and dev kit: http://www.libpng.org/pub/png/libpng.html
  5. Update the Makefile MSTOOLKITPATH

Windows:

Much the same as Linuxabove, if using a Linux-like environment (MinGW/MSYS/CygWin etc). If using Visual Studio (works great this way), try the following:

  1. Clone and compile the MSToolkit as a library.
  2. Download and compile the libpng as a library.
  3. Download the precompiled SDL dev and runtime libraries.
  4. Download the precompiled SDL_ttf dev and runtime libraries.
  5. Compile all .cpp source and link the MSToolkit,libpng, and SDL libraries.
  6. Add the SDL dlls to the binary folder prior to running KojakSpectrumViewer.

I apologize in advance for the lack of user friendliness to the entire process. Over time I plan on improving this repo to reduce the complexity for compilation and automate more of the processes.

Binaries

To hell with compiling, if you just want the binaries, go to: http://kojak-ms.org

License

KojakSpectrumViewer code is available under the Apache License, Version 2.0.

SDL_SavePNG (https://github.com/driedfruit/SDL_SavePNG) code retains its zlib/libpng license.