V2.13

What's Changed

• use minimap for contigs, genecatalog and genomes in #569 #577
• filter genomes my self in #568
  The filter function is defined in the config file:

genome_filter_criteria: "(Completeness-5*Contamination >50 ) & (Length_scaffolds >=50000) & (Ambigious_bases <1e6) & (N50 > 5*1e3) & (N_scaffolds < 1e3)"

The genome filtering is similar as other publications in the field, e.g. GTDB. What is maybe a bit different is that genomes with completeness around 50% and contamination around 10% are excluded where as using the default parameters dRep would include those.

• use Drep again in #579
  We saw better performances using drep. This scales also now to ~1K samples
• Use new Dram version 1.4 by in #564

Full Changelog: v2.12.0...v2.13.0