From d8691ee41abe613e30b21475275958d9bd83f0c7 Mon Sep 17 00:00:00 2001 From: Silas Kieser Date: Mon, 31 Aug 2020 10:23:29 +0200 Subject: [PATCH] add Developpment/Extensions --- README.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/README.md b/README.md index 415abfd1..f8c4f210 100644 --- a/README.md +++ b/README.md @@ -28,3 +28,15 @@ You can start using atlas with three commands: > Kieser, S., Brown, J., Zdobnov, E. M., Trajkovski, M. & McCue, L. A. > BMC Bioinformatics 21, 257 (2020). > doi: [10.1186/s12859-020-03585-4](https://doi.org/10.1186/s12859-020-03585-4) + + +# Developpment/Extensions + +Here are some ideas I work or want to work on when I have time. If you want to contribute or have some ideas let me know via a feature request issue. + +- Optimized MAG recovery (e.g. [Spacegraphcats](https://github.com/spacegraphcats/spacegraphcats)) +- Integration of viruses/plasmid that live for now as [extensions](https://github.com/metagenome-atlas/virome_atlas) +- Add statistics and visualisations as in [atlas_analyze](https://github.com/metagenome-atlas/atlas_analyze) +- Implementation of most rules as snakemake wrapper +- Cloud execution +- Update to new nakemake version and use cool reports.