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23 Open 44 Closed
23 Open 44 Closed
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Issues list

Add a method ignore certain wells for training/validation enhancement New feature or request
#205 opened Nov 18, 2024 by edyoshikun
OOM issues with 3D FCMAE fine-tuning bug Something isn't working translation Image translation (VS)
#201 opened Nov 5, 2024 by edyoshikun
2
Investigate kvikio enhancement New feature or request
#199 opened Nov 4, 2024 by ziw-liu
Add PCA to prediction of contrastive models enhancement New feature or request representation Representation learning (SSL)
#191 opened Oct 18, 2024 by ziw-liu
Support python 3.13 maintenance Maintenance work
#187 opened Oct 17, 2024 by ziw-liu v0.4.0
1
1
Update hosted virtual staining config files for 0.3.0 documentation Improvements or additions to documentation translation Image translation (VS)
#183 opened Oct 16, 2024 by ziw-liu v0.3.0
@edyoshikun @ziw-liu
1
Document representation evaluation functions documentation Improvements or additions to documentation representation Representation learning (SSL)
#177 opened Sep 27, 2024 by ziw-liu v0.4.0
@alishbaimran
5
explainability tools for representation enhancement New feature or request representation Representation learning (SSL)
#157 opened Sep 9, 2024 by mattersoflight v0.4.0
@ziw-liu
2
Log embeddings in TensorBoard enhancement New feature or request representation Representation learning (SSL)
#155 opened Sep 1, 2024 by ziw-liu v0.4.0
1
Implement NT-Xent loss (implicit negative samples) enhancement New feature or request representation Representation learning (SSL)
#136 opened Aug 15, 2024 by ziw-liu v0.4.0
1
@edyoshikun
3
Move to NumPy style docstrings? documentation Improvements or additions to documentation maintenance Maintenance work
#133 opened Aug 13, 2024 by ziw-liu v0.4.0
1
Support loading data from a specific resolution of a .zarr pyramid enhancement New feature or request translation Image translation (VS)
#125 opened Aug 7, 2024 by talonchandler v0.4.0
1
@edyoshikun
2
API for 2D UNeXt2 model construction needs clarity
#107 opened Jul 9, 2024 by mattersoflight
@ziw-liu
2
organize application scripts on GitHub rather than disk documentation Improvements or additions to documentation
#98 opened Jun 28, 2024 by mattersoflight
@edyoshikun @alishbaimran @ziw-liu
Layer-wise learning rate decay during fine-tuning enhancement New feature or request
#75 opened Apr 24, 2024 by ziw-liu v0.4.0
clean up viscy cli display documentation Improvements or additions to documentation
#73 opened Mar 21, 2024 by mattersoflight
@ziw-liu
Testing the training pipeline
#56 opened Sep 21, 2023 by ziw-liu
strategies to improve invariance with data augmentation
#54 opened Sep 16, 2023 by mattersoflight
@ziw-liu
1
Viscy workflow questions and experience from DL@MBL
#52 opened Sep 10, 2023 by edyoshikun
3 of 7 tasks
sampling strategy to improve class balance across cell cycle
#24 opened Jul 31, 2023 by mattersoflight
1
Cleanup torch module registration
#13 opened Jun 16, 2023 by ziw-liu
@ziw-liu
Improving visualization of predictions on tensorboard with appropriate intensity scale enhancement New feature or request
#15 opened May 3, 2023 by Soorya19Pradeep
@ziw-liu
Augmentation strategy for generalization across magnification
#16 opened Apr 21, 2023 by ziw-liu
1
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