utils.py

import os
from os.path import join
import json
import pandas as pd
import time
import numpy as np
import torch 

def str2bool(v):
    # convert string to boolean type for argparser input
    if isinstance(v, bool):
       return v
    if v.lower() in ('yes', 'true', 't', 'y', '1'):
        return True
    elif v.lower() in ('no', 'false', 'f', 'n', '0'):
        return False
    else:
        raise argparse.ArgumentTypeError('Boolean value expected.')


def str_or_none(v):
    # convert string to boolean type for argparser input
    if v is None:
       return None
    if v.lower() == 'none':
        return None
    else:
        return v

# helper functions for LDA arguments
def dic2name(dic):
    return '_'.join(["{}-{}".format(k, dic[k]) for k in sorted(dic)])

def name2dic(s):
    return {x.split('-')[0]:x.split('-')[1] for x in s.split('_')}


def get_valid_types(TYPENAME):

    with open(join(os.environ['BASEPATH'], 'configs', 'types.json'), 'r') as typefile:  
        valid_types = json.load(typefile)[TYPENAME]
    return valid_types


def df_index_gen(f, table=False):
    # merge locator and dataset_id to genearte index table_id
    f.loc[:,'table_id'] = f.apply(lambda x: '+'.join([x['locator'], x['dataset_id']]), axis = 1)
    if not table:
        f.loc[:,'field_id'] = f.apply(lambda x: x['field_id'].split(":")[-1], axis = 1)
    f = f.drop(columns=['locator', 'dataset_id']).set_index('table_id')
    return f


# load dataframe from pickle or create pickle file
def load_tmp_df(load_path, tmp_path, name, table=False):
    start = time.time()
    pkl_file = join(tmp_path, "{}.pkl".format(name))
    if os.path.exists(pkl_file):
        print("{} pickle file found, loading...".format(pkl_file))
        df = pd.read_pickle(pkl_file)
    else:
        #process and save pkl
        print("{} pickle file not found, creating...".format(pkl_file))
        df = pd.read_csv(join(load_path, "{}.csv".format(name)))

        df = df_index_gen(df, table)
        df.to_pickle(pkl_file)
    print("{} Load complete. Time {}".format(name, time.time()-start))
    return df

def logSumExpTensor(vec):
  # vec -> 16, tag_size
  batch_size = vec.size()[0]
  vec = vec.view(batch_size, -1)
  max_score = torch.max(vec, 1)[0]
  max_score_broadcast = max_score.view(-1, 1).expand(-1, vec.size()[1])
  return max_score + \
        torch.log(torch.sum(torch.exp(vec - max_score_broadcast), 1))

def logNormalizeTensor(a):

    denom = logSumExpTensor(a)
    if len(a.size())==2:
      denom = denom.view(-1, 1).expand(-1, a.size()[1])
    elif len(a.size())==3:
      denom = denom.view(a.size()[0], 1, 1).expand(-1, a.size()[1], a.size()[2])
    return (a-denom)

def logNormalize(a):

    denom = np.logaddexp.reduce(a, 1)
    return (a.transpose()- denom).transpose()

def logDot(a, b):

    # numeric stable way of calculating log (e^a, e^b)
    max_a = np.amax(a)
    max_b = np.amax(b)

    C = np.dot(np.exp(a - max_a), np.exp(b - max_b))
    np.log(C, out=C)
    # else:
    #   np.log(C + 1e-300, out=C)

    C += max_a + max_b

    return C