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make: *** [local_assembly/shiftSamPos] Error 2 #5

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Nickerson-Cool opened this issue Apr 2, 2019 · 0 comments
Open

make: *** [local_assembly/shiftSamPos] Error 2 #5

Nickerson-Cool opened this issue Apr 2, 2019 · 0 comments

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@Nickerson-Cool
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Hi:
Recently, I want to use phasedsv to call SVs ,but i met a problem when I install the package,the installion dependence is OK, I don't know how to solve the issue.
the issues are as follows:
make[1]: Leaving directory /home/Leesocool/sofaware/phasedsv-master/hdf5-1.8.14/cmake_build' cd local_assembly && make make[1]: Entering directory /home/Leesocool/sofaware/phasedsv-master/local_assembly'
g++ ShiftSamFromRegion.cpp -o shiftSamPos
cd pbgreedyphase && make
make[2]: Entering directory /home/Leesocool/sofaware/phasedsv-master/local_assembly/pbgreedyphase' make[2]: *** No targets specified and no makefile found. Stop. make[2]: Leaving directory /home/Leesocool/sofaware/phasedsv-master/local_assembly/pbgreedyphase'
make[1]: *** [pbgreedyphase/partitionByPhasedSNVs] Error 2
make[1]: Leaving directory `/home/Leesocool/sofaware/phasedsv-master/local_assembly'
make: *** [local_assembly/shiftSamPos] Error 2

Thank you for your attention.

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