Skip to content

Latest commit

 

History

History
11 lines (7 loc) · 316 Bytes

README.md

File metadata and controls

11 lines (7 loc) · 316 Bytes

Split10x

Given a bam file from 10x genomics with barcode inforamtion and a phased-vcf (again by 10x), generate two bams that contain the reads from each haplotype.

Usage: split10x reads.bam vars.vcf hap_base max_molecule_length

max_molecule_length is the maximum expected size of a barcoded fragment of DNA.