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fix: ID ordering differences *_aucs() / *_slopes() #349

fix: ID ordering differences *_aucs() / *_slopes()

fix: ID ordering differences *_aucs() / *_slopes() #349

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
name: R-CMD-check
on:
push:
branches: main
pull_request:
branches: main
workflow_dispatch:
release:
types: [published]
concurrency:
group: ${{ github.workflow }}-${{ github.event_name }}
cancel-in-progress: true
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-latest, r: '4.3.2'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
BCFTOOLS_VERSION: 1.16
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- name: Install libcurl
if: runner.os == 'Linux'
run: |
sudo apt-get update
sudo apt-get install libcurl4-openssl-dev
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck, local::.
- name: Install BCFtools
if: runner.os == 'Linux'
run: |
sudo apt-get update && \
sudo apt-get install -y --no-install-recommends \
libxt6 \
ca-certificates \
bzip2 \
wget \
autoconf \
automake \
make \
cmake \
libbz2-dev \
liblzma-dev \
libjpeg-dev \
libxml2-dev \
zlib1g-dev \
libgdal-dev
wget -q -P /tmp/ https://github.com/samtools/bcftools/releases/download/${BCFTOOLS_VERSION}/bcftools-${BCFTOOLS_VERSION}.tar.bz2 && \
tar -C /tmp/ -xjf /tmp/bcftools-${BCFTOOLS_VERSION}.tar.bz2 && \
cd /tmp/bcftools-${BCFTOOLS_VERSION} && \
sudo autoreconf -i && \
sudo ./configure --prefix=/usr && \
sudo make && \
sudo make install
- uses: r-lib/actions/check-r-package@v2
with:
args: 'c("--no-manual")'
error-on: '"error"'
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check