fix: ID ordering differences *_aucs() / *_slopes() #349
Workflow file for this run
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
name: R-CMD-check | |
on: | |
push: | |
branches: main | |
pull_request: | |
branches: main | |
workflow_dispatch: | |
release: | |
types: [published] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event_name }} | |
cancel-in-progress: true | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: '4.3.2'} | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
R_KEEP_PKG_SOURCE: yes | |
BCFTOOLS_VERSION: 1.16 | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Install libcurl | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-get update | |
sudo apt-get install libcurl4-openssl-dev | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::rcmdcheck, local::. | |
- name: Install BCFtools | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-get update && \ | |
sudo apt-get install -y --no-install-recommends \ | |
libxt6 \ | |
ca-certificates \ | |
bzip2 \ | |
wget \ | |
autoconf \ | |
automake \ | |
make \ | |
cmake \ | |
libbz2-dev \ | |
liblzma-dev \ | |
libjpeg-dev \ | |
libxml2-dev \ | |
zlib1g-dev \ | |
libgdal-dev | |
wget -q -P /tmp/ https://github.com/samtools/bcftools/releases/download/${BCFTOOLS_VERSION}/bcftools-${BCFTOOLS_VERSION}.tar.bz2 && \ | |
tar -C /tmp/ -xjf /tmp/bcftools-${BCFTOOLS_VERSION}.tar.bz2 && \ | |
cd /tmp/bcftools-${BCFTOOLS_VERSION} && \ | |
sudo autoreconf -i && \ | |
sudo ./configure --prefix=/usr && \ | |
sudo make && \ | |
sudo make install | |
- uses: r-lib/actions/check-r-package@v2 | |
with: | |
args: 'c("--no-manual")' | |
error-on: '"error"' | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@main | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check |