From edc354d0aed31d6a1b011ace97d7a6c7e2545dad Mon Sep 17 00:00:00 2001
From: mbstadler <stadler.michael@gmail.com>
Date: Thu, 2 Nov 2023 16:48:46 +0100
Subject: [PATCH] setup GHA

---
 .../test-basiliskStart-fallback.yaml          | 53 +++++++++++++++++++
 1 file changed, 53 insertions(+)
 create mode 100644 .github/workflows/test-basiliskStart-fallback.yaml

diff --git a/.github/workflows/test-basiliskStart-fallback.yaml b/.github/workflows/test-basiliskStart-fallback.yaml
new file mode 100644
index 0000000..24b1dca
--- /dev/null
+++ b/.github/workflows/test-basiliskStart-fallback.yaml
@@ -0,0 +1,53 @@
+on:
+  workflow_dispatch:
+  push:
+
+name: test-basiliskStart-fallback
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.bioc }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+        # - { os: macOS-latest, bioc: 'devel'}
+        # - { os: ubuntu-latest, bioc: 'devel'}
+        - { os: macOS-latest, bioc: 'release'}
+        - { os: ubuntu-latest, bioc: 'release'}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      CRAN: ${{ matrix.config.cran }}
+      GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+
+      - name: Set up R and install BiocManager
+        uses: grimbough/bioc-actions/setup-bioc@v1
+        with:
+          bioc-version: ${{ matrix.config.bioc }}
+
+      - name: Install basilisk
+        run: |
+          BiocManager::install(c('basilisk'))
+        shell: Rscript {0}
+
+      - name: Test basiliskStart
+        run: |
+          basilisk::setBasiliskForceFallback(TRUE)
+          tmploc <- file.path(tempdir(), "my_package_A")
+          if (!file.exists(tmploc)) {
+              setupBasiliskEnv(tmploc, c('pandas=1.4.3'))
+          }
+          cl <- basiliskStart(tmploc, testload="pandas")
+          cl
+          .libPaths()
+          sessionInfo()
+        shell: Rscript {0}