diff --git a/.github/workflows/test-basiliskStart-fallback.yaml b/.github/workflows/test-basiliskStart-fallback.yaml index 6a0eff4..2c1e6b6 100644 --- a/.github/workflows/test-basiliskStart-fallback.yaml +++ b/.github/workflows/test-basiliskStart-fallback.yaml @@ -8,7 +8,7 @@ jobs: R-CMD-check: runs-on: ${{ matrix.config.os }} - name: ${{ matrix.config.os }} (${{ matrix.config.bioc }} + name: ${{ matrix.config.os }} (${{ matrix.config.bioc }}) strategy: fail-fast: false @@ -16,8 +16,8 @@ jobs: config: # - { os: macOS-latest, bioc: 'devel'} # - { os: ubuntu-latest, bioc: 'devel'} - - { os: macOS-latest, bioc: 'release'} - - { os: ubuntu-latest, bioc: 'release'} + - { os: macOS-latest, bioc: '3.18'} + - { os: ubuntu-latest, bioc: '3.18'} - { os: macOS-latest, bioc: '3.17'} - { os: ubuntu-latest, bioc: '3.17'} @@ -45,17 +45,19 @@ jobs: run: | library(basilisk) library(basilisk.utils) + + sessionInfo() + basilisk.utils::installConda() basilisk::setBasiliskForceFallback(TRUE) tmploc <- file.path(".", "my_package_A") if (!file.exists(tmploc)) { - setupBasiliskEnv(tmploc, c('pandas=1.4.3')) + setupBasiliskEnv(tmploc, c('pandas=1.4.3', 'python=3.8')) } cl <- basiliskStart(tmploc, testload="pandas") cl - - .libPaths() - sessionInfo() + + basiliskRun(proc = cl, function() sessionInfo()) shell: Rscript {0}