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setup.cfg
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setup.cfg
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[bumpversion]
current_version = 0.9.1
commit = True
tag = True
parse = (?P<major>\d+)
\.(?P<minor>\d+)
\.(?P<patch>\d+)
(?P<release>[a]*)(?P<num>\d*)
serialize =
{major}.{minor}.{patch}{release}{num}
{major}.{minor}.{patch}
tag_name = {new_version}
[metadata]
name = sbmlutils
url = https://github.com/matthiaskoenig/sbmlutils
download_url = https://pypi.org/project/sbmlutils
project_urls =
Source Code = https://github.com/matthiaskoenig/sbmlutils
Documentation = https://sbmlutils.readthedocs.io
Bug Tracker = https://github.com/matthiaskoenig/sbmlutils/issues
author = Matthias Koenig
author_email = [email protected]
maintainer = Matthias Koenig
maintainer_email = [email protected]
classifiers =
Development Status :: 5 - Production/Stable
Intended Audience :: Science/Research
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Operating System :: OS Independent
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: Implementation :: CPython
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
license = LGPL-3.0
description = sbmlutils are utilities for working with SBML.
long_description = file: README.rst
long_description_content_type = text/x-rst
keywords =
modeling
standardization
SBML
[options]
zip_safe = True
python_requires = >=3.10
install_requires =
pymetadata>=0.4.1
depinfo
rich
lxml
requests
jinja2
xmltodict
pydantic>2.8
setuptools # fix for colorbrewer dependency of py4cytoscape
numpy>=1.26.4
python-libsbml>=5.20.4
antimony>=2.15.0
scipy>=1.14
pandas>=2.2.0
tabulate>=0.9.0
pint>=0.24.3
markdown-it-py>=3.0.0
openpyxl>=3.1.5
xmlschema>=3.3.2
matplotlib>=3.9
py4cytoscape>=1.11.0
libroadrunner>=2.7.0
uvicorn>=0.30.6
fastapi>=0.112.0
python-multipart>=0.0.9
tests_require =
tox>=3.24.3
pytest>=7.0.1
setup_requires =
pytest-runner
packages = find:
package_dir =
= src
include_package_data = True
[aliases]
test = pytest
[options.packages.find]
where = src
[options.extras_require]
development =
pip-tools>=7.4.1
black>=24.8.0
bump2version>=1.0.1
isort>=5.12.0
tox>=4.6.3
flake8>=6.0.0
flake8-mypy>=17.8.0
mypy>=1.4.1
pytest>=7.4.0
pytest-cov>=4.1.0
beautifulsoup4>=4.12.3
docs =
sphinx>=3.4.3
ipykernel>=5.4.3
nbsphinx>=0.8.1
sphinx_rtd_theme>=0.5.1
pypandoc>=1.5
sphinx-autoapi>=1.7.0
[bdist_wheel]
universal = 1
[bumpversion:part:release]
optional_value = placeholder
first_value = placeholder
values =
placeholder
a
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:src/sbmlutils/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"