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pplacer --groups stalls in phylosift #338

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nmb85 opened this issue Jan 7, 2015 · 0 comments
Open

pplacer --groups stalls in phylosift #338

nmb85 opened this issue Jan 7, 2015 · 0 comments

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@nmb85
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nmb85 commented Jan 7, 2015

When I run phylosift, pplacer will run without the --groups option, but not with the --groups option.

This doesn't finish:
pplacer --groups 15 -o concat.updated.1.jplace --verbosity 0 -j 12 -c concat.updated "concat.updated.1.fasta"

This finishes:
pplacer -o concat.updated.1.jplace --verbosity 0 -j 12 -c concat.updated "concat.updated.1.fasta"

Files to replicate the problem:
https://www.dropbox.com/sh/reicc0vgqzrvicc/AADkpac1lED89sthscbAe8MUa?dl=0

My kernel info: Linux 2.6.32-431.11.2.el6.x86_64
pplacer version: v1.1.alpha16-1-gf748c91

See this thread for background info: https://groups.google.com/forum/#!topic/phylosift/mQ0UASXwf2M
@nmb85 nmb85 changed the title pplacer pplacer in phylosift Jan 14, 2015
@nmb85 nmb85 changed the title pplacer in phylosift pplacer --groups stalls in phylosift Jan 14, 2015
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