Turtle_File_Quality_Control.yml

name: Turtle File Quality Control

on:
  push:
    paths:
      - 'data/AOPWikiRDF.ttl'
      - 'data/AOPWikiRDF-Genes.ttl'
      - 'data/AOPWikiRDF-Void.ttl'
  pull_request:
    paths:
      - 'data/AOPWikiRDF.ttl'
      - 'data/AOPWikiRDF-Genes.ttl'
      - 'data/AOPWikiRDF-Void.ttl'

jobs:
  quality-control:
    runs-on: ubuntu-latest

    steps:
      # Step 1: Check out the repository
      - name: Checkout Repository
        uses: actions/checkout@v4

      # Step 2: Set up Python (if needed for the tools)
      - name: Set up Python
        uses: actions/setup-python@v2
        with:
          python-version: '3.9'

      # Step 3: Install RDFLib
      - name: Install RDFLib
        run: |
          pip install rdflib

      # Step 4: Syntax Check for Turtle Files
      - name: Syntax Check for Turtle Files
        run: |
          for file in data/AOPWikiRDF.ttl data/AOPWikiRDF-Genes.ttl data/AOPWikiRDF-Void.ttl; do
            echo "Checking syntax of $file"
            python -m rdflib.util -i turtle $file || exit 1
          done

      # Optional: Upload Report (only if the workflow failed)
      - name: Upload QC Report
        if: failure()
        uses: actions/upload-artifact@v3
        with:
          name: qc-report
          path: data/qc-report.txt


      - name: Upload QC Status
        if: success()
        uses: actions/upload-artifact@v3
        with:
          name: qc-status
          path: .
          retention-days: 7