DESCRIPTION

Package: yamatClassifier
Type: Package
Title: Yet Another Methylation Array Toolkit: Classifier
Version: 0.0.0.9009
Authors@R: c(
    person("Mark", "Chen", email = "mjchen.gene@gmail.com", role = "cre"))
Maintainer: Mark J Chen <mjchen.gene@gmail.com>
Description: The package is used to build classifiers of tumors from 
    methylation array data.
License: GPL (>=2)
Encoding: UTF-8
LazyData: true
Imports:
    magrittr (>= 1.5),
    yamat (>= 0.0.0.9010),
    matrixStats (>= 0.54.0),
    ggpubr (>= 0.1.9),
    ggplot2 (>= 3.1.0),
    ggplotify (>= 0.1.2),
    patchwork (>= 1.2.0),
    RSpectra (>= 0.13.1),
    Rtsne (>= 0.13),
    dplyr (>= 0.7.8),
    tidyr (>= 0.8),
    logger (>= 0.3.0),
    corrplot (>= 0.84),
    limma (>= 3.60.0),
    caret (>= 6.0),
    randomForest (>= 4.7),
    glmnet (>= 4.1),
    Boruta (>= 8.0),
    MLmetrics (>= 1.1.0),
    IlluminaHumanMethylationEPICv2manifest (>= 1.0.0),
    IlluminaHumanMethylationEPICv2anno.20a1.hg38 (>= 1.0.0)
Suggests: knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr
RoxygenNote: 7.3.2