diff --git a/src/hgvs/assemblymapper.py b/src/hgvs/assemblymapper.py index dcc5e0a6..64766bb3 100644 --- a/src/hgvs/assemblymapper.py +++ b/src/hgvs/assemblymapper.py @@ -88,8 +88,11 @@ def __init__( self.in_par_assume = in_par_assume self._norm = None if self.normalize: + vm = VariantMapper(hdp=hdp, replace_reference=replace_reference, + prevalidation_level=prevalidation_level, + add_gene_symbol=add_gene_symbol) self._norm = hgvs.normalizer.Normalizer( - hdp, alt_aln_method=alt_aln_method, validate=False + hdp, alt_aln_method=alt_aln_method, validate=False, variantmapper=vm ) self._assembly_map = { k: v for k, v in hdp.get_assembly_map(self.assembly_name).items() if k.startswith("NC_")