From fcc849637bd71e683bffc618e1a48081a8df08f8 Mon Sep 17 00:00:00 2001 From: anneodonnell Date: Tue, 22 Jan 2019 21:23:43 -0500 Subject: [PATCH] Add files via upload Haploinsufficient genes, all developmental disorders. 50 highly penetrant, severe condition autosomal disease genes; 11 genes on X chromosome are highly penetrant, severe or lethal condition in males, moderate or severe condition in females. Gene used in Cummings et al. Transcript annotation paper. --- ..._annotation_Haploinsufficient_genes_61.tsv | 62 +++++++++++++++++++ 1 file changed, 62 insertions(+) create mode 100644 lists/Transcript_annotation_Haploinsufficient_genes_61.tsv diff --git a/lists/Transcript_annotation_Haploinsufficient_genes_61.tsv b/lists/Transcript_annotation_Haploinsufficient_genes_61.tsv new file mode 100644 index 0000000..c94d823 --- /dev/null +++ b/lists/Transcript_annotation_Haploinsufficient_genes_61.tsv @@ -0,0 +1,62 @@ +CHROM START STOP ENSGID GENE_NAME +2 166095912 166248818 ENSG00000136531.9 SCN2A +1 8412457 8877702 ENSG00000142599.13 RERE +12 23682440 24103966 ENSG00000134532.11 SOX5 +X 48379546 48387104 ENSG00000147155.6 EBP +22 51112843 51171726 ENSG00000251322.3 SHANK3 +12 49412758 49453557 ENSG00000167548.10 KMT2D +2 200134223 200335989 ENSG00000119042.12 SATB2 +17 2496504 2588909 ENSG00000007168.8 PAFAH1B1 +X 13752832 13787480 ENSG00000046651.10 OFD1 +18 42260138 42648475 ENSG00000152217.12 SETBP1 +X 48929385 48958108 ENSG00000196998.11 WDR45 +X 153769414 153796782 ENSG00000073009.8 IKBKG +1 43391052 43424530 ENSG00000117394.15 SLC2A1 +17 17584787 17714767 ENSG00000108557.13 RAI1 +8 61591337 61779465 ENSG00000171316.7 CHD7 +X 41374187 41782716 ENSG00000147044.16 CASK +X 133507283 133562820 ENSG00000156531.12 PHF6 +7 69063905 70258054 ENSG00000158321.11 AUTS2 +2 148778580 149275805 ENSG00000204406.7 MBD5 +1 27022524 27108595 ENSG00000117713.13 ARID1A +15 93426526 93571237 ENSG00000173575.14 CHD2 +6 157099063 157531913 ENSG00000049618.17 ARID1B +16 89334038 89556969 ENSG00000167522.10 ANKRD11 +17 70117161 70122561 ENSG00000125398.5 SOX9 +12 116395711 116715143 ENSG00000123066.3 MED13L +2 166845670 166984523 ENSG00000144285.11 SCN1A +13 115079988 115092796 ENSG00000198824.4 CHAMP1 +6 143072604 143266338 ENSG00000010818.4 HIVEP2 +X 48367350 48379202 ENSG00000102312.16 PORCN +1 27860546 27930942 ENSG00000126705.9 AHDC1 +14 21853353 21924285 ENSG00000100888.8 CHD8 +17 44107282 44302733 ENSG00000120071.8 KANSL1 +X 153576892 153603006 ENSG00000196924.10 FLNA +9 130374544 130457460 ENSG00000136854.13 STXBP1 +17 42927311 42977030 ENSG00000108883.8 EFTUD2 +14 29235050 29238870 ENSG00000176165.7 FOXG1 +13 100634026 100639018 ENSG00000043355.6 ZIC2 +3 71003844 71633140 ENSG00000114861.14 FOXP1 +X 39909068 40036582 ENSG00000183337.12 BCOR +16 67596310 67673086 ENSG00000102974.10 CTCF +12 13693165 14133053 ENSG00000273079.1 GRIN2B +22 41487790 41576081 ENSG00000100393.9 EP300 +18 52889562 53332018 ENSG00000196628.9 TCF4 +12 46123448 46301823 ENSG00000189079.11 ARID2 +21 38738092 38889753 ENSG00000157540.15 DYRK1A +1 61330931 61928465 ENSG00000162599.11 NFIA +20 49505585 49547958 ENSG00000101126.11 ADNP +3 128198270 128212028 ENSG00000179348.7 GATA2 +6 33387847 33421466 ENSG00000197283.8 SYNGAP1 +9 140513444 140764468 ENSG00000181090.13 EHMT1 +5 139487362 139496321 ENSG00000185129.4 PURA +5 88013975 88199922 ENSG00000081189.9 MEF2C +X 11129421 11141198 ENSG00000004961.10 HCCS +16 3775055 3930727 ENSG00000005339.8 CREBBP +5 36876861 37066515 ENSG00000164190.12 NIPBL +18 19749404 19782491 ENSG00000141448.4 GATA6 +3 9439299 9520924 ENSG00000168137.11 SETD5 +X 153287024 153363212 ENSG00000169057.15 MECP2 +9 86582998 86595569 ENSG00000165119.14 HNRNPK +2 145141648 145282147 ENSG00000169554.12 ZEB2 +3 41236328 41301587 ENSG00000168036.12 CTNNB1