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Incorrect demand that "--noise_transcript_gtf" option be specified #54

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lweasel opened this issue Jan 13, 2016 · 0 comments
Open

Incorrect demand that "--noise_transcript_gtf" option be specified #54

lweasel opened this issue Jan 13, 2016 · 0 comments
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lweasel commented Jan 13, 2016

When simulating reads, the location of a GTF file containing noise transcript definitions should need only to be specified if background noise is being simulated (i.e. for values of "--noise-perc" other than zero). However, if "--noise-perc 0" is specified in an options file, rather than on the command line, piquant will incorrectly exit, asking that the "--noise_transcript_gtf" option be specified.

A temporary workaround is to instead specify "--noise-perc 0" on the command line.

Thank you to @hiraksarkar for finding this bug.

@lweasel lweasel added the bug label Jan 13, 2016
@lweasel lweasel self-assigned this Jan 13, 2016
@lweasel lweasel added this to the 1.2 milestone Jan 13, 2016
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