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vip.tt
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
<html>
<head><title>Virus Identification Pipeline (VIP) Report</title>
<meta charset="utf-8">
<style type="text/css">
@media screen {
div.summary {
width: 18em;
position:fixed;
top: 3em;
margin:1em 0 0 1em;
height: auto;
overflow-y: scroll;
bottom: 2.3em;
}
div.main {
display:block;
position:absolute;
overflow:auto;
height:auto;
width:auto;
top:4.5em;
bottom:2.3em;
left:18em;
right:0;
border-left: 1px solid #CCC;
padding:0 0 0 1em;
background-color: white;
z-index:1;
}
div.header {
background-color: #EEE;
border:0;
margin:0;
padding: 0.5em;
font-size: 200%;
font-weight: bold;
position:fixed;
width:100%;
top:0;
left:0;
z-index:2;
}
div.footer {
background-color: #EEE;
border:0;
margin:0;
padding:0.5em;
height: 1.3em;
overflow:hidden;
font-size: 100%;
font-weight: bold;
position:fixed;
bottom:0;
width:100%;
z-index:2;
}
img.indented {
margin-left: 3em;
}
}
@media print {
img {
max-width:100% !important;
page-break-inside: avoid;
}
h2, h3 {
page-break-after: avoid;
}
div.header {
background-color: #FFF;
}
}
body {
font-family: sans-serif;
color: #000;
background-color: #FFF;
border: 0;
margin: 0;
padding: 0;
}
div.header {
border:0;
margin:0;
padding: 0.5em;
font-size: 200%;
font-weight: bold;
width:100%;
}
#header_title {
display:inline-block;
float:left;
clear:left;
}
#header_filename {
display:inline-block;
float:right;
clear:right;
font-size: 50%;
margin-right:2em;
text-align: right;
}
div.header h3 {
font-size: 50%;
margin-bottom: 0;
}
div.summary ul {
padding-left:0;
list-style-type:none;
}
div.summary ul li img {
margin-bottom:-0.5em;
margin-top:0.5em;
}
div.main {
background-color: white;
}
div.module {
padding-bottom:1.5em;
padding-top:1.5em;
}
div.footer {
background-color: #EEE;
border:0;
margin:0;
padding: 0.5em;
font-size: 100%;
font-weight: bold;
width:100%;
}
a {
color: #000080;
}
a:hover {
color: #800000;
}
h2 {
color: #800000;
padding-bottom: 0;
margin-bottom: 0;
clear:left;
}
table {
margin-left: 0.5em;
text-align: center;
}
th {
text-align: center;
background-color: #000080;
color: #FFF;
padding: 0.4em;
}
td {
font-family: monospace;
text-align: left;
background-color: #EEE;
color: #000;
padding: 0.4em;
}
img {
padding-top: 0;
margin-top: 0;
border-top: 0;
}
p {
padding-top: 0;
margin-top: 0;
}
</style>
</head>
<body>
<div class="header">
<div id="header_title">Virus Identification Pipeline (VIP) Report [% mode %] mode</div>
<div id="header_filename">
File subject to VIP : [% report_name %]<br />
The process cost [% total_time %] seconds
</div>
</div>
<div class="summary">
<h2>Quick Link</h2>
<ul>
[% FOREACH line IN lines %]
[% IF pics_covplot.item(line.1) %]
<li><a href="#[% line.1 %]">[% line.1 %]</a></li>
[% END %]
[% END %]
</ul>
</div>
<div class="main">
<div class="module"><h2>Reads Distribution</h2>
<table><tr>
<td><img src=reads_distribution.[% report_name %].png border=0></td>
<td><img src=virus_distribution.[% report_name %].png border=0></td>
</tr></table>
<div class="module"><h2>Summary Report</h2>
<table>
<tr>
[% FOREACH header IN h %]
<th>[% header %]</th>
[% END %]
</tr>
[% FOREACH line IN lines %]
<tr>
<td>[% line.0 %]</td>
<td>
[% IF pics_covplot.item(line.1) %]
<a href="#[% line.1 %]">[% line.1 %]</a>
[% ELSE %]
[% line.1 %]
[% END %]
</td>
<td>[% line.2 %]</td>
<td>[% line.3 %]</td>
<td>[% line.4 %]</td>
<td>[% line.5 %]</td>
<td>[% line.6 %]</td>
</tr>
[% END %]
</table>
[% FOREACH line IN lines %]
[% IF pics_covplot.item(line.1) or pics_covplot.item(line.1) %]
<div class="module"><h2 id="[% line.1 %]">[% line.1 %]</h2>
<p><img class="indented" src="[% pics_phygo.item(line.1) %]" alt="[% line.1 %]"></p>
<p><img class="indented" src="[% pics_covplot.item(line.1) %]" alt="[% line.1 %]"></p>
</div>
[% END %]
[% END %]
</div>
</div><div class="footer">Produced by <a href="https://github.com/yang-li/Virus-Identification-Pipeline/">Virus Identification Pipeline</a> (version 0.1.0) Contact: [email protected]</div>
</body></html>