test-upstream.yaml

name: Test with upstream linkml
on:
  pull_request_review:
    types: [ submitted ]
  workflow_dispatch:

jobs:
  test_upstream:
    if: github.event_name == 'workflow_dispatch' || github.event.review.state == 'APPROVED'
    strategy:
      matrix:
        os: [ ubuntu-latest, windows-latest ]
        python-version: [ "3.8", "3.9", "3.10", "3.11" ]
        pydantic-version: [ "1", "2" ]
        exclude:
          - os: windows-latest
            python-version: "3.8"
          - os: windows-latest
            pydantic-version: "1"
          - python-version: "3.8"
            pydantic-version: "1"
          - python-version: "3.9"
            pydantic-version: "1"
          - python-version: "3.10"
            pydantic-version: "1"
    runs-on: ${{ matrix.os }}

    steps:

      - name: checkout upstream
        uses: actions/checkout@v4
        with:
          repository: linkml/linkml
          path: linkml
          ref: main
          fetch-depth: 0

      - name: checkout linkml-runtime
        uses: actions/checkout@v4
        with:
          # don't specify repository like this or else we won't get pull request branches correctly
          # repository: linkml/linkml-runtime
          path: linkml-runtime
          fetch-depth: 0

      - name: set up python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: install poetry
        uses: snok/install-poetry@v1
        with:
          virtualenvs-create: true
          virtualenvs-in-project: true

      - name: Load cached venv
        id: cached-poetry-dependencies
        uses: actions/cache@v3
        with:
          path: linkml/.venv
          key: venv-${{ matrix.python-version }}-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}

      # make extra sure we're removing any old version of linkml-runtime that exists
      - name: uninstall potentially cached linkml-runtime
        working-directory: linkml
        run: poetry run pip uninstall linkml-runtime

      # we are not using linkml-runtime's lockfile, but simulating what will happen
      # when we merge this and update linkml's lockfile
      - name: add linkml-runtime to lockfile
        working-directory: linkml
        run: poetry add ../linkml-runtime

      # use correct pydantic version
      - name: install pydantic
        working-directory: linkml
        run: poetry add pydantic@^${{ matrix.pydantic-version }}

      # note that we run the installation step always, even if we restore a venv,
      # the cache will restore the old version of linkml-runtime, but the lockfile
      # will only store the directory dependency (and thus will reinstall it)
      # the cache will still speedup the rest of the installation
      - name: install linkml
        working-directory: linkml
        run: poetry install --no-interaction -E tests

      - name: print linkml-runtime version
        working-directory: linkml
        run: poetry run python -c 'import linkml_runtime; from importlib.metadata import version; print(linkml_runtime.__file__); print(version("linkml_runtime"))'

      - name: run tests
        working-directory: linkml
        run: poetry run python -m pytest --with-slow