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Within the exomiser process at line 132:
# link the staged/downloaded data to predefined path ln -s "\$PWD/$exomiser_data/" /data/exomiser-data-bundle
The data bundle requires a symbolic link to create the /data/exomiser-data-bundle .
The docker container used, will bind to this file within the container.
And this /data/exomiser-data-bundle is also hard coded in assets/applications.config.
This application config is a user input and changing this has resulted in errors.
All of these these parameters will need changing to remove the aforementioned code: ln -s "$PWD/$exomiser_data/" /data/exomiser-data-bundle
The text was updated successfully, but these errors were encountered:
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Within the exomiser process at line 132:
The data bundle requires a symbolic link to create the /data/exomiser-data-bundle .
The docker container used, will bind to this file within the container.
And this /data/exomiser-data-bundle is also hard coded in assets/applications.config.
This application config is a user input and changing this has resulted in errors.
All of these these parameters will need changing to remove the aforementioned code:
ln -s "$PWD/$exomiser_data/" /data/exomiser-data-bundle
The text was updated successfully, but these errors were encountered: