Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

exomiser data needs symbolic link in process to function #2

Open
R-Cardenas opened this issue Dec 2, 2022 · 0 comments
Open

exomiser data needs symbolic link in process to function #2

R-Cardenas opened this issue Dec 2, 2022 · 0 comments

Comments

@R-Cardenas
Copy link
Contributor

Within the exomiser process at line 132:

# link the staged/downloaded data to predefined path
ln -s "\$PWD/$exomiser_data/" /data/exomiser-data-bundle

The data bundle requires a symbolic link to create the /data/exomiser-data-bundle .

The docker container used, will bind to this file within the container.

And this /data/exomiser-data-bundle is also hard coded in assets/applications.config.

This application config is a user input and changing this has resulted in errors.

All of these these parameters will need changing to remove the aforementioned code:
ln -s "$PWD/$exomiser_data/" /data/exomiser-data-bundle

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant