project.json

{
  "name": "Onco-GPS Paper Analysis",
  "description": "Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States",
  "git_url": "https://github.com/UCSD-CCAL/onco_gps_paper_analysis",
  "version": "1.0.1",
  "keywords": [
    "SPro",
    "Shareable Project",
    "CCAL"
  ],
  "downloads": {
    "data": [
      "ftp://caftpd.nci.nih.gov/pub/OCG-DCC/CTD2/Broad/CTRPv2.2_2015_pub_CancerDisc_5_1210/CTRPv2.2_2015_pub_CancerDisc_5_1210.zip",
      "https://portals.broadinstitute.org/ccle_legacy/downloadFile/DefaultSystemRoot/exp_10/ds_30/CCLE_MUT_EXPR_RPPA_OncoGPS.zip?downloadff=true&fileId=27325"
    ]
  },
  "commands": {
    "notebook": "jupyter notebook"
  },
  "environment_history": [
    "conda install --prefix PROJECT_ENVIRONMENT_DIRECTORY_PATH --channel conda-forge --yes --quiet jupyter yapf click pandas hdf5 pytables scikit-learn scipy statsmodels matplotlib seaborn plotly pycrypto bcrypt biopython rpy2 r-mass",
    "conda install --prefix PROJECT_ENVIRONMENT_DIRECTORY_PATH --channel bioconda --yes --quiet pyfaidx",
    "pip install --quiet pytabix"
  ]
}