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environment.yaml
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environment.yaml
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name: gdmicro
channels:
- pytorch
- conda-forge
- r
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_33
- bioconductor-biobase=2.46.0=r36h516909a_0
- bioconductor-biocgenerics=0.32.0=r36_0
- bioconductor-biomformat=1.14.0=r36_0
- bioconductor-biostrings=2.54.0=r36h516909a_0
- bioconductor-iranges=2.20.0=r36h516909a_0
- bioconductor-multtest=2.42.0=r36h516909a_0
- bioconductor-phyloseq=1.30.0=r36_0
- bioconductor-rhdf5=2.30.0=r36he1b5a44_0
- bioconductor-rhdf5lib=1.8.0=r36h516909a_0
- bioconductor-s4vectors=0.24.0=r36h516909a_0
- bioconductor-siamcat=1.6.0=r36_0
- bioconductor-xvector=0.26.0=r36h516909a_0
- bioconductor-zlibbioc=1.32.0=r36h516909a_0
- blas=1.0=mkl
- brotlipy=0.7.0=py37h540881e_1004
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2022.9.24=ha878542_0
- cairo=1.16.0=hcf35c78_1003
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.14.4=py37h11fe52a_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- colorama=0.4.5=pyhd8ed1ab_0
- conda=4.12.0=py37h89c1867_0
- conda-package-handling=1.9.0=py37h540881e_0
- cryptography=38.0.2=py37h38fbfac_0
- cudatoolkit=10.2.89=h713d32c_10
- curl=7.68.0=hf8cf82a_0
- cycler=0.11.0=pyhd8ed1ab_0
- dbus=1.13.6=hfdff14a_1
- decorator=5.1.1=pyhd8ed1ab_0
- expat=2.4.9=h27087fc_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.14.0=hc2a2eb6_1
- freetype=2.12.1=hca18f0e_0
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=7.5.0=hda68d29_13
- gcc_linux-64=7.5.0=h47867f9_33
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=7.5.0=h56cb351_20
- gfortran_linux-64=7.5.0=h78c8a43_33
- glib=2.66.3=h58526e2_0
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- graphite2=1.3.13=h58526e2_1001
- gsl=2.5=h294904e_1
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- gxx_impl_linux-64=7.5.0=h64c220c_13
- gxx_linux-64=7.5.0=h555fc39_33
- harfbuzz=2.4.0=h9f30f68_3
- icu=64.2=he1b5a44_1
- idna=3.4=pyhd8ed1ab_0
- intel-openmp=2022.1.0=h9e868ea_3769
- jpeg=9e=h166bdaf_2
- kernel-headers_linux-64=2.6.32=he073ed8_15
- kiwisolver=1.4.4=py37h7cecad7_0
- krb5=1.16.4=h2fd8d38_0
- lame=3.100=h166bdaf_1003
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_mkl
- libcblas=3.9.0=16_linux64_mkl
- libclang=9.0.1=default_hb4e5071_5
- libcurl=7.68.0=hda55be3_0
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libglib=2.66.3=hbe7bbb4_0
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_mkl
- libllvm9=9.0.1=default_hc23dcda_7
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libpng=1.6.38=h753d276_0
- libsolv=0.7.22=h6239696_0
- libsqlite=3.39.4=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.4.0=h55922b4_4
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=0.10.0=he1b5a44_0
- libxml2=2.9.10=hee79883_0
- libzlib=1.2.12=h166bdaf_4
- make=4.3=hd18ef5c_1
- matplotlib=3.1.2=py37_1
- matplotlib-base=3.1.2=py37h250f245_1
- mkl=2022.1.0=hc2b9512_224
- ncurses=6.3=h27087fc_1
- nettle=3.6=he412f7d_0
- networkx=2.4=py_1
- nspr=4.32=h9c3ff4c_1
- nss=3.78=h2350873_0
- numpy=1.17.3=py37h95a1406_0
- openh264=2.1.1=h780b84a_0
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1q=h166bdaf_0
- pandas=1.0.1=py37hb3f55d8_0
- pandoc=2.19.2=ha770c72_0
- pango=1.42.4=h7062337_4
- pcre=8.45=h9c3ff4c_0
- pillow=9.2.0=py37h850a105_2
- pip=22.2.2=pyhd8ed1ab_0
- pixman=0.38.0=h516909a_1003
- pthread-stubs=0.4=h36c2ea0_1001
- pycosat=0.6.3=py37h540881e_1010
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=22.1.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.12.3=py37h8685d9f_3
- pysocks=1.7.1=py37h89c1867_5
- python=3.7.3=h357f687_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pytorch=1.12.0=py3.7_cuda10.2_cudnn7.6.5_0
- pytorch-mutex=1.0=cuda
- pytz=2022.4=pyhd8ed1ab_0
- qt=5.12.5=hd8c4c69_1
- r-ade4=1.7_16=r36h30ea16f_1
- r-ape=5.5=r36h306847c_0
- r-askpass=1.1=r36hcfec24a_2
- r-assertthat=0.2.1=r36h6115d3f_2
- r-backports=1.2.1=r36hcfec24a_0
- r-base=3.6.1=h3a67422_6
- r-base64enc=0.1_3=r36hcfec24a_1004
- r-bbmisc=1.11=r36hcdcec82_1003
- r-beanplot=1.2=r36_1003
- r-blob=1.2.1=r36h6115d3f_1
- r-brio=1.1.2=r36hcfec24a_0
- r-broom=0.7.6=r36hc72bb7e_0
- r-callr=3.7.0=r36hc72bb7e_0
- r-cellranger=1.1.0=r36h6115d3f_1003
- r-checkmate=2.0.0=r36hcdcec82_1
- r-cli=2.5.0=r36hc72bb7e_0
- r-clipr=0.7.1=r36h142f84f_0
- r-cluster=2.1.0=r36h31ca83e_4
- r-codetools=0.2_18=r36hc72bb7e_0
- r-colorspace=2.0_1=r36hcfec24a_0
- r-corrplot=0.88=r36hc72bb7e_0
- r-cpp11=0.2.7=r36hc72bb7e_0
- r-crayon=1.4.1=r36hc72bb7e_0
- r-curl=4.3.1=r36hcfec24a_0
- r-data.table=1.14.0=r36hcfec24a_0
- r-dbi=1.1.1=r36hc72bb7e_0
- r-dbplyr=2.1.1=r36hc72bb7e_0
- r-desc=1.3.0=r36hc72bb7e_0
- r-diffobj=0.3.4=r36hcfec24a_0
- r-digest=0.6.27=r36h03ef668_0
- r-dplyr=1.0.6=r36h03ef668_1
- r-ellipsis=0.3.2=r36hcfec24a_0
- r-evaluate=0.14=r36h6115d3f_2
- r-fansi=0.4.2=r36hcfec24a_0
- r-farver=2.1.0=r36h03ef668_0
- r-fastmatch=1.1_0=r36hcdcec82_1005
- r-forcats=0.5.1=r36hc72bb7e_0
- r-foreach=1.5.1=r36h142f84f_0
- r-fs=1.5.0=r36h0357c0b_0
- r-generics=0.1.0=r36hc72bb7e_0
- r-ggplot2=3.3.3=r36hc72bb7e_0
- r-glmnet=4.0_2=r36h31ca83e_1
- r-glue=1.4.2=r36hcfec24a_0
- r-gridbase=0.4_7=r36h6115d3f_1003
- r-gridextra=2.3=r36h6115d3f_1003
- r-gtable=0.3.0=r36h6115d3f_3
- r-haven=2.4.1=r36h2713e49_0
- r-highr=0.9=r36hc72bb7e_0
- r-hms=1.1.0=r36hc72bb7e_0
- r-htmltools=0.5.1.1=r36h03ef668_0
- r-httr=1.4.2=r36h6115d3f_0
- r-igraph=1.2.6=r36h084b37e_1
- r-infotheo=1.2.0=r36he1b5a44_1004
- r-isoband=0.2.4=r36h03ef668_0
- r-iterators=1.0.13=r36h142f84f_0
- r-jsonlite=1.7.2=r36hcfec24a_0
- r-knitr=1.33=r36hc72bb7e_0
- r-labeling=0.4.2=r36h142f84f_0
- r-lattice=0.20_44=r36hcfec24a_0
- r-liblinear=2.10_12=r36h03ef668_0
- r-lifecycle=1.0.0=r36hc72bb7e_0
- r-lubridate=1.7.10=r36h03ef668_0
- r-magrittr=2.0.1=r36hcfec24a_1
- r-markdown=1.1=r36hcfec24a_1
- r-mass=7.3_54=r36hcfec24a_0
- r-matrix=1.3_3=r36he454529_0
- r-matrixstats=0.58.0=r36hcfec24a_0
- r-mgcv=1.8_35=r36he454529_0
- r-mime=0.10=r36hcfec24a_0
- r-mlr=2.19.0=r36hcfec24a_1
- r-modelr=0.1.8=r36h6115d3f_0
- r-munsell=0.5.0=r36h6115d3f_1003
- r-nlme=3.1_150=r36h31ca83e_0
- r-openssl=1.4.4=r36he36bf35_0
- r-parallelmap=1.5.0=r36h6115d3f_1
- r-paramhelpers=1.14=r36hcdcec82_1
- r-permute=0.9_5=r36h6115d3f_3
- r-pillar=1.6.1=r36hc72bb7e_0
- r-pixmap=0.4_12=r36hc72bb7e_0
- r-pkgconfig=2.0.3=r36h6115d3f_1
- r-pkgload=1.2.1=r36h03ef668_0
- r-plyr=1.8.6=r36h0357c0b_1
- r-praise=1.0.0=r36h6115d3f_1004
- r-prettyunits=1.1.1=r36h6115d3f_1
- r-proc=1.17.0.1=r36h03ef668_0
- r-processx=3.5.2=r36hcfec24a_0
- r-progress=1.2.2=r36h6115d3f_2
- r-prroc=1.3.1=r36_1002
- r-ps=1.6.0=r36hcfec24a_0
- r-purrr=0.3.4=r36hcfec24a_1
- r-r6=2.5.0=r36hc72bb7e_0
- r-rcolorbrewer=1.1_2=r36h6115d3f_1003
- r-rcpp=1.0.6=r36h03ef668_0
- r-readr=1.4.0=r36h1b71b39_0
- r-readxl=1.3.1=r36hde08347_4
- r-rematch=1.0.1=r36h6115d3f_1003
- r-rematch2=2.1.2=r36h6115d3f_1
- r-reprex=2.0.0=r36hc72bb7e_0
- r-reshape2=1.4.4=r36h0357c0b_1
- r-rlang=0.4.11=r36hcfec24a_0
- r-rmarkdown=2.8=r36hc72bb7e_0
- r-rprojroot=2.0.2=r36hc72bb7e_0
- r-rstudioapi=0.13=r36hc72bb7e_0
- r-rvest=1.0.0=r36hc72bb7e_0
- r-scales=1.1.1=r36h6115d3f_0
- r-selectr=0.4_2=r36h6115d3f_1
- r-shape=1.4.6=r36ha770c72_0
- r-sp=1.4_5=r36hcfec24a_0
- r-stringi=1.4.6=r36h0e574ca_2
- r-stringr=1.4.0=r36h6115d3f_2
- r-survival=3.2_11=r36hcfec24a_0
- r-sys=3.4=r36hcfec24a_0
- r-testthat=3.0.2=r36h03ef668_0
- r-tibble=3.1.2=r36hcfec24a_0
- r-tidyr=1.1.3=r36h03ef668_0
- r-tidyselect=1.1.1=r36hc72bb7e_0
- r-tidyverse=1.2.1=r36h6115d3f_1002
- r-tinytex=0.31=r36hc72bb7e_0
- r-utf8=1.2.1=r36hcfec24a_0
- r-vctrs=0.3.8=r36hcfec24a_1
- r-vegan=2.5_6=r36hc3f0d1c_3
- r-viridislite=0.4.0=r36hc72bb7e_0
- r-waldo=0.2.5=r36hc72bb7e_0
- r-withr=2.4.2=r36hc72bb7e_0
- r-xfun=0.23=r36hcfec24a_0
- r-xml=3.99_0.3=r36hcdcec82_1
- r-xml2=1.3.2=r36h0357c0b_1
- r-yaml=2.2.1=r36hcfec24a_1
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- ruamel_yaml=0.15.80=py37h540881e_1007
- scipy=1.5.2=py37h8911b10_2
- sed=4.8=he412f7d_0
- setuptools=59.8.0=py37h89c1867_1
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.39.4=h4ff8645_0
- sysroot_linux-64=2.12=he073ed8_15
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- torchaudio=0.12.0=py37_cu102
- torchvision=0.13.0=py37_cu102
- tornado=6.2=py37h540881e_0
- tqdm=4.64.1=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- urllib3=1.26.11=pyhd8ed1ab_0
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.12=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- args==0.1.0
- backcall==0.2.0
- clint==0.5.1
- coverage==6.5.0
- hiddenlayer==0.3
- higra==0.6.4
- ipython==7.32.0
- jedi==0.18.1
- joblib==1.2.0
- mamba==0.11.2
- matplotlib-inline==0.1.6
- parso==0.8.3
- pexpect==4.8.0
- pickleshare==0.7.5
- prompt-toolkit==3.0.31
- ptyprocess==0.7.0
- pygments==2.13.0
- pyqt5-sip==4.19.18
- pyqtchart==5.12
- pyqtwebengine==5.12.1
- scikit-learn==1.0.2
- threadpoolctl==3.1.0
- traitlets==5.4.0
- wcwidth==0.2.5