flnjtree_ui.fl

# data file for the Fltk User Interface Designer (fluid)
version 1.0106 
header_name {.h} 
code_name {.cc}
decl {\#include "flglobal.h"} {} 

Function {make_main_window(void *global)} {} {
  code {FNglobal *g = (FNglobal*)global;} {}
  Fl_Window {} {
    label FLtreeBeST
    xywh {340 105 604 657} type Double labelsize 11 resizable visible
  } {
    Fl_Tabs {} {open
      xywh {0 0 604 632} box PLASTIC_THIN_UP_BOX
      code0 {o->callback(cb_update_buttons, g);}
      code1 {g->tabs = o;}
      code2 {o->when(FL_WHEN_CHANGED);}
    } {
      Fl_Group {} {
        label Artemis open
        xywh {0 25 604 607} labelsize 11
      } {
        Fl_Scroll {} {open
          xywh {0 28 604 604} box DOWN_FRAME
        } {
          Fl_Box {} {
            xywh {2 30 600 600} box FLAT_BOX color 7
            code0 {g->workspace[FN_ARTEMIS] = o;}
            code1 {o->set_global(g);}
            class Workspace
          }
        }
      }
      Fl_Group {} {
        label Dionysis open
        xywh {0 25 604 607} labelsize 11 hide
      } {
        Fl_Scroll {} {open
          xywh {0 28 604 604} box DOWN_FRAME
        } {
          Fl_Box {} {
            xywh {2 30 600 600} box FLAT_BOX color 7
            code0 {g->workspace[FN_DIONYSIS] = o;}
            code1 {o->set_global(g);}
            class Workspace
          }
        }
      }
      Fl_Group {} {
        label Selena open
        xywh {0 25 604 607} labelsize 11 hide
      } {
        Fl_Scroll {} {open
          xywh {0 28 604 604} box DOWN_FRAME
        } {
          Fl_Box {} {
            xywh {2 30 600 600} box FLAT_BOX color 7
            code0 {g->workspace[FN_SELENA] = o;}
            code1 {o->set_global(g);}
            class Workspace
          }
        }
      }
    }
    Fl_Button {} {
      label {&Open}
      tooltip {load a tree (^o)} xywh {3 634 35 20} box PLASTIC_UP_BOX shortcut 0x4006f labelsize 11
      code0 {o->callback(cb_open, g);}
    }
    Fl_Button {} {
      label {&Save}
      tooltip {save current tree (^s)} xywh {41 634 35 20} box PLASTIC_UP_BOX shortcut 0x40073 labelsize 11 deactivate
      code0 {o->callback(cb_save, g);}
      code1 {g->b_save = o;}
    }
    Fl_Button {} {
      label {&Expt}
      tooltip {export current tree (^e)} xywh {79 634 35 20} box PLASTIC_UP_BOX shortcut 0x40065 labelsize 11 deactivate
      code0 {o->callback(cb_expt, g);}
      code1 {g->b_expt = o;}
    }
    Fl_Button {} {
      label {&Build} user_data_type {void*}
      tooltip {build tree (^b)} xywh {122 634 35 20} box PLASTIC_UP_BOX shortcut 0x40062 labelsize 11
      code0 {o->callback(cb_build, g);}
    }
    Fl_Button {} {
      label {&Root}
      tooltip {root current tree (^r)} xywh {160 634 35 20} box PLASTIC_UP_BOX shortcut 0x40072 labelsize 11 deactivate
      code0 {o->callback(cb_root, g);}
      code1 {g->b_root = o;}
    }
    Fl_Button {} {
      label {&Quit}
      callback {exit(0);}
      tooltip {exit (^q)} xywh {566 634 35 20} box PLASTIC_UP_BOX shortcut 0x40071 labelsize 11
    }
    Fl_Button {} {
      label {&Help}
      callback {fl_message("FLtreeBeST-0.2.0, FLTK GUI to TreeBeST.\\nWritten by Heng Li <lh3@@sanger.ac.uk>.\\n\\n(Move mouse over buttons to see instructions.)");}
      tooltip {help (^h)} xywh {528 634 35 20} box PLASTIC_UP_BOX shortcut 0x40068 labelsize 11
    }
    Fl_Button {} {
      label F
      tooltip {larger font (F)} xywh {579 3 22 20} box PLASTIC_UP_BOX shortcut 0x46 labelfont 1
      code0 {o->callback(cb_large_font, g);}
    }
    Fl_Button {} {
      label F
      tooltip {smaller font (f)} xywh {554 3 22 20} box PLASTIC_UP_BOX shortcut 0x66 labelsize 9
      code0 {o->callback(cb_small_font, g);}
    }
    Fl_Button {} {
      label {Y-}
      tooltip {zoom out y (y)} xywh {529 3 22 20} box PLASTIC_UP_BOX shortcut 0x79 labelsize 11
      code0 {o->callback(cb_zoom_out_y, g);}
    }
    Fl_Button {} {
      label {Y+}
      tooltip {zoom in y (Y)} xywh {504 3 22 20} box PLASTIC_UP_BOX shortcut 0x59 labelsize 11
      code0 {o->callback(cb_zoom_in_y, g);}
    }
    Fl_Button {} {
      label {X-}
      tooltip {zoom out x (x)} xywh {479 3 22 20} box PLASTIC_UP_BOX shortcut 0x78 labelsize 11
      code0 {o->callback(cb_zoom_out_x, g);}
    }
    Fl_Button {} {
      label {X+}
      tooltip {zoom in x (X)} xywh {454 3 22 20} box PLASTIC_UP_BOX shortcut 0x58 labelsize 11
      code0 {o->callback(cb_zoom_in_x, g);}
    }
    Fl_Light_Button {} {
      label Spec
      tooltip {show/hide taxa (s)} xywh {401 3 45 20} box PLASTIC_UP_BOX shortcut 0x73 labelsize 11
      code0 {o->callback(cb_spec, g);}
      code1 {o->when(FL_WHEN_CHANGED);}
      code2 {g->b_spec = o;}
    }
    Fl_Light_Button {} {
      label Real
      tooltip {real/equal length (r)} xywh {353 3 45 20} box PLASTIC_UP_BOX shortcut 0x72 labelsize 11
      code0 {o->callback(cb_real, g);}
      code1 {o->value(1);}
      code2 {o->when(FL_WHEN_CHANGED);}
      code3 {g->b_real = o;}
    }
    Fl_Button {} {
      label {Or&der}
      tooltip {order leaves (^d)} xywh {198 634 35 20} box PLASTIC_UP_BOX shortcut 0x40064 labelsize 11 deactivate
      code0 {o->callback(cb_order, g);}
      code1 {g->b_order = o;}
    }
    Fl_Button {} {
      label {&Comp}
      tooltip {compare trees (^c)} xywh {236 634 35 20} box PLASTIC_UP_BOX shortcut 0x40063 labelsize 11 deactivate
      code0 {o->callback(cb_compare, g);}
      code1 {g->b_comp = o;}
    }
    Fl_Button {} {
      label {&Merge}
      tooltip {merge trees (^m)} xywh {274 634 35 20} box PLASTIC_UP_BOX shortcut 0x4006d labelsize 11 deactivate
      code0 {o->callback(cb_merge, g);}
      code1 {g->b_merge = o;}
    }
    Fl_Button {} {
      label {@<}
      tooltip {previous workspace (,)} xywh {150 3 20 20} box PLASTIC_UP_BOX shortcut 0x2c
      code0 {o->callback(cb_prev, g);}
    }
    Fl_Button {} {
      label {@>}
      tooltip {next workspace (.)} xywh {173 3 20 20} box PLASTIC_UP_BOX shortcut 0x2e
      code0 {o->callback(cb_next, g);}
    }
    Fl_Button {} {
      label {&Trans}
      tooltip {back translate aa multialignment (^t)} xywh {317 634 35 20} box PLASTIC_UP_BOX shortcut 0x40074 labelsize 11
      code0 {o->callback(cb_backtrans, g);}
    }
    Fl_Button {} {
      label {&Phyml}
      tooltip {build PHYML tree (^p)} xywh {355 634 35 20} box PLASTIC_UP_BOX shortcut 0x40070 labelsize 11
      code0 {o->callback(cb_phyml, g);}
    }
  }
} 

Function {make_build_window(void *global)} {open
} {
  code {FNglobal *g = (FNglobal*)global;
FNbuild *b = g->build;} {}
  Fl_Window {} {
    label Build open
    xywh {321 250 350 265} type Double box PLASTIC_UP_BOX labelsize 11 visible
  } {
    Fl_Return_Button {} {
      label {&Build}
      xywh {80 225 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_build_tree, g);}
    }
    Fl_Button {} {
      label {&Close} user_data_type {void*}
      xywh {210 225 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_close_build, g);}
    }
    Fl_Button {} {
      label {&Browse}
      xywh {259 29 60 22} box PLASTIC_UP_BOX
      code0 {o->callback(cb_browse, g);}
    }
    Fl_Input {} {
      label {Alignment:}
      xywh {120 30 130 20}
      code0 {b->i_alignment = o;}
    }
    Fl_Choice {} {
      label {&Input Type:} open
      xywh {120 55 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {b->i_type = o;}
      code1 {o->menu(menu_type);}
      code2 {o->callback(cb_type, g);}
    } {}
    Fl_Choice {} {open
      xywh {259 55 60 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {b->i_format = o;}
      code1 {o->menu(menu_format);}
    } {}
    Fl_Choice {} {
      label {&Distance Model:} open
      xywh {120 80 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {b->i_dist_type = o;}
      code1 {o->menu(menu_aa_type);}
    } {}
    Fl_Input {} {
      label {Bootstrapping:}
      xywh {120 105 130 20}
      code0 {b->i_bs = o;}
      code1 {o->value("100");}
      class Fl_Int_Input
    }
    Fl_Input {} {
      label {Quality Cutoff:}
      xywh {120 130 130 20}
      code0 {b->i_cutoff = o;}
      code1 {o->value("10");}
      class Fl_Int_Input
    }
    Fl_Progress {} {
      label {0%}
      xywh {40 190 270 20} selection_color 15 labelsize 11
      code0 {b->prog_bar = o;}
      code1 {o->minimum(0.0);}
      code2 {o->maximum(1.0);}
      code3 {o->value(0.0);}
    }
    Fl_Check_Button {} {
      label apply
      tooltip {check to apply a constrained tree} xywh {260 155 20 20} down_box DOWN_BOX
      code0 {b->is_cons = o;}
      code1 {o->callback(cb_toggle_cons, g);}
    }
    Fl_Choice {} {
      label {Constrained Tree:} open
      xywh {120 155 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX deactivate
      code0 {o->menu(menu_workspace);}
      code1 {b->i_cons_tree = o;}
    } {}
    Fl_Check_Button {} {
      label {mask LSS}
      tooltip {mask low-scoring segments (LSS)} xywh {260 130 20 20} down_box DOWN_BOX
      code0 {o->value(1);}
    }
  }
} 

Function {make_merge_window(void *global)} {} {
  code {FNglobal *g = (FNglobal*)global;
FNmerge *m = g->merge;} {}
  Fl_Window {} {
    label {Tree Merge} open
    xywh {680 370 245 130} type Double box PLASTIC_THIN_UP_BOX visible
  } {
    Fl_Choice {} {
      label {Tree &1:} open
      xywh {75 25 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {m->i_ws1 = o;}
      code1 {o->menu(menu_workspace);}
    } {}
    Fl_Choice {} {
      label {Tree &2:} open
      xywh {75 50 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {m->i_ws2 = o;}
      code1 {o->menu(menu_workspace);}
    } {}
    Fl_Return_Button {} {
      label {&Merge}
      xywh {35 90 70 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_merge_tree, g);}
    }
    Fl_Button {} {
      label {&Close}
      xywh {140 90 70 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_close_merge, g);}
    }
  }
} 

Function {make_comp_window(void *global)} {} {
  code {FNglobal *g = (FNglobal*)global;
FNcompare *c = g->compare;} {}
  Fl_Window {} {
    label {Compare Trees} open
    xywh {680 250 245 110} type Double box PLASTIC_THIN_UP_BOX visible
  } {
    Fl_Choice {} {
      label {Tree:} open
      xywh {70 25 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {o->menu(menu_workspace);}
      code1 {c->i_ws = o;}
    } {}
    Fl_Return_Button {} {
      label {Com&pare}
      xywh {30 65 85 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_compare_tree, g);}
    }
    Fl_Button {} {
      label {&Close}
      xywh {130 65 85 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_close_compare, g);}
    }
  }
} 

Function {make_trans_window(void *global)} {} {
  code {FNglobal *g = (FNglobal*)global;
FNbacktrans *b = (FNbacktrans*)g->backtrans;} {}
  Fl_Window {} {
    label {Back Translate} open
    xywh {320 269 350 160} type Double box PLASTIC_UP_BOX visible
  } {
    Fl_Input {} {
      label {AA alignment:}
      xywh {110 30 145 20}
      code0 {b->i_aa_aln = o;}
    }
    Fl_Input {} {
      label {NT sequences:}
      xywh {110 55 145 20}
      code0 {b->i_nt_seq = o;}
    }
    Fl_Input {} {
      label {NT aln output:}
      xywh {110 80 145 20}
      code0 {b->i_nt_aln = o;}
    }
    Fl_Button {} {
      label Browse
      xywh {265 29 60 22} box PLASTIC_UP_BOX
      code0 {o->callback(cb_browse_aa_aln, g);}
    }
    Fl_Button {} {
      label Browse
      xywh {265 54 60 22} box PLASTIC_UP_BOX
      code0 {o->callback(cb_browse_nt_seq, g);}
    }
    Fl_Button {} {
      label Browse
      xywh {265 79 60 22} box PLASTIC_UP_BOX
      code0 {o->callback(cb_browse_nt_aln, g);}
    }
    Fl_Return_Button {} {
      label {&Trans}
      xywh {80 120 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_do_backtrans, g);}
    }
    Fl_Button {} {
      label {&Close}
      xywh {210 120 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_close_backtrans, g);}
    }
  }
} 

Function {make_phyml_window(void *global)} {open
} {
  code {FNglobal *g = (FNglobal*)global;
FNphyml *p = g->phyml;} {}
  Fl_Window {} {
    label Phyml open selected
    xywh {132 145 350 490} type Double box PLASTIC_UP_BOX visible
  } {
    Fl_Input {} {
      label {Alignment:}
      xywh {120 30 130 20}
      code0 {p->i_alignment = o;}
    }
    Fl_Button {} {
      label Browse
      xywh {259 29 60 22} box PLASTIC_UP_BOX
      code0 {o->callback(cb_phyml_browse, g);}
    }
    Fl_Choice {} {
      label {&Input Type:} open
      xywh {120 80 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {p->i_type = o;}
      code1 {o->menu(menu_phyml_type);}
      code2 {o->callback(cb_phyml_type, g);}
    } {}
    Fl_Choice {} {open
      xywh {259 80 60 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {p->i_format = o;}
      code1 {o->menu(menu_format);}
    } {}
    Fl_Choice {} {
      label {&Model:} open
      xywh {120 105 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX
      code0 {p->i_model = o;}
      code1 {o->menu(menu_phyml_nt_model);}
    } {}
    Fl_Choice {} {
      label {Input &Tree:} open
      tooltip {calculate the branch length of the input tree} xywh {120 55 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX deactivate
      code0 {p->i_tree = o;}
      code1 {o->menu(menu_workspace);}
    } {}
    Fl_Check_Button {} {
      label apply
      tooltip {check to optimize the input tree} xywh {259 55 20 20} down_box DOWN_BOX
      code0 {p->has_tree = o;}
      code1 {o->value(0);}
      code2 {o->callback(cb_phyml_has_tree, g);}
    }
    Fl_Input {} {
      label {ts/tv Ratio:}
      tooltip {transition/transversion ratio (kappa)} xywh {120 130 70 20} deactivate
      code0 {p->i_tstv = o;}
      code1 {o->value("4.0");}
      class Fl_Float_Input
    }
    Fl_Check_Button {} {
      label estimate
      tooltip {check to estimate transition/transvertion ratio} xywh {195 130 20 20} down_box DOWN_BOX
      code0 {p->is_tstv = o;}
      code1 {o->value(1);}
      code2 {o->callback(cb_phyml_tstv, g);}
    }
    Fl_Input {} {
      label {Rate Categories:}
      tooltip {number of discrete rate categories} xywh {120 180 70 20}
      code0 {p->i_num_cat = o;}
      code1 {o->value("1");}
      code2 {o->callback(cb_phyml_n_cat, g);}
      class Fl_Int_Input
    }
    Fl_Input {} {
      label {Alpha Parameter:}
      tooltip {shape parameter of Gamma distribution} xywh {120 205 70 20} deactivate
      code0 {p->i_alpha = o;}
      code1 {o->value("1.0");}
      class Fl_Float_Input
    }
    Fl_Check_Button {} {
      label estimate
      tooltip {check to estimate alpha shape parameter} xywh {195 205 20 20} down_box DOWN_BOX deactivate
      code0 {p->is_alpha = o;}
      code1 {o->value(0);}
      code2 {o->callback(cb_phyml_alpha, g);}
    }
    Fl_Progress {} {
      label {0%}
      tooltip unavailable xywh {40 405 270 20} selection_color 15 labelsize 11 deactivate
    }
    Fl_Return_Button {} {
      label {&Build}
      xywh {60 440 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_phyml_tree, g);}
    }
    Fl_Button {} {
      label {&Close} user_data_type {void*}
      xywh {230 440 60 25} box PLASTIC_UP_BOX
      code0 {o->callback(cb_close_phyml, g);}
    }
    Fl_Button {} {
      label {&Stop} user_data_type {void*}
      tooltip {NOT implemented yet} xywh {145 440 60 25} box PLASTIC_UP_BOX deactivate
    }
    Fl_Input {} {
      label {Invariant Sites:}
      tooltip {proportion of invariant sites} xywh {120 155 70 20}
      code0 {p->i_inv = o;}
      code1 {o->value("0.0");}
      class Fl_Float_Input
    }
    Fl_Check_Button {} {
      label estimate
      tooltip {check to estimate proportion of invariant sites} xywh {195 155 20 20} down_box DOWN_BOX
      code0 {p->is_inv = o;}
      code1 {o->value(0);}
      code2 {o->callback(cb_phyml_inv, g);}
    }
    Fl_Input {} {
      label {Quality Cutoff:}
      tooltip {threshod for masking poorly aligned regions} xywh {120 265 70 20}
      code0 {p->i_cutoff = o;}
      code1 {o->value("11");}
      class Fl_Int_Input
    }
    Fl_Check_Button {} {
      label {mask LSS}
      tooltip {mask low-scoring segments (LSS)} xywh {195 265 20 20} down_box DOWN_BOX
      code0 {o->value(1);}
      code1 {p->is_mask_lss = o;}
    }
    Fl_Input {} {
      label {Duplication Prob:}
      xywh {120 335 70 20} deactivate
      class Fl_Float_Input
    }
    Fl_Input {} {
      label {Loss Prob (spec):}
      xywh {120 360 70 20} deactivate
      class Fl_Float_Input
    }
    Fl_Input {} {
      label {(dup):}
      xywh {230 360 70 20} deactivate
      class Fl_Float_Input
    }
    Fl_Check_Button {} {
      label {use species tree}
      xywh {195 335 70 20} down_box DOWN_BOX deactivate
    }
    Fl_Choice {} {
      label {&Constraining Tree} open
      xywh {120 300 130 20} box PLASTIC_UP_BOX down_box BORDER_BOX deactivate
    } {}
    Fl_Check_Button {} {
      label apply
      tooltip {check to optimize the input tree} xywh {259 300 20 20} down_box DOWN_BOX deactivate
    }
    Fl_Input {} {
      label {Bootstrapping:}
      xywh {120 230 70 20}
      code0 {p->i_bs = o;}
      code1 {o->value("0");}
      class Fl_Int_Input
    }
  }
}