From 2bb4e502018e76435ba785f490bdfb095d943c31 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 12 Oct 2020 16:19:43 -0400 Subject: [PATCH 01/17] Expand analyzer() constructor docstring --- TIMBER/Analyzer.py | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index ab74c0e..c672d76 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -31,7 +31,11 @@ class analyzer(object): the active node and assigns the output node as the new active node""" def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): """ - Constructor + Constructor. Setups the tracking of actions on an RDataFrame as nodes. Also + looks up and stores common information in NanoAOD such as the number of generated + events in a file (#genEventCount), the LHA ID of the PDF set in the `LHEPdfWeights` + branch (#lhaid), if the file is data (#isData), and if the file is before NanoAOD + version 6 (#preV6). Args: fileName (str): A ROOT file path or the path to a txt file which contains several ROOT file paths separated by @@ -70,7 +74,11 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): ## @var genEventCount # int # - # Number of generated events in imported simulation files. Zero if data. + # Number of generated events in imported simulation files. Zero if not found or data. + ## @var lhaid + # int + # + # LHA ID of the PDF weight set in the NanoAOD. -1 if not found or data. ## @var ActiveNode # Node # From b6b76fef53b828aa4de5aff4d2e76a3d526b95c9 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 12 Oct 2020 16:52:19 -0400 Subject: [PATCH 02/17] Doc for snapshot and add analyzer method --- TIMBER/Analyzer.py | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index c672d76..90fcf4d 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -156,6 +156,10 @@ def DataFrame(self): ''' return self.ActiveNode.DataFrame + def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE'): + '''@see Node#Snapshot''' + self.ActiveNode.Snapshot(columns,outfilename,treename,lazy,openOption) + def SetActiveNode(self,node): """Sets the active node. @@ -817,6 +821,17 @@ def Apply(self,actiongrouplist): # IMPORTANT: When writing a variable size array through Snapshot, it is required that the column indicating its size is also written out and it appears before the array in the columns list. # columns should be an empty string if you'd like to keep everything def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE'): # columns can be a list or a regular expression or 'all' + '''Takes a snapshot of the RDataFrame corresponding to this Node. + Compression algorithm set to 1 (ZLIB) and compression level are set to 1. + + Args: + columns ([str] or str): List of columns to keep (str) with regex matching. + Provide single string 'all' to include all columns. + outfilename (str): Name of the output file + treename ([type]): Name of the output TTree + lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. + openOption (str, optional): TFile opening options. Defaults to 'RECREATE'. + ''' opts = ROOT.RDF.RSnapshotOptions() opts.fLazy = lazy opts.fMode = openOption From c6a119160d46850c891a9ced2b28dfdae895ab44 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Tue, 13 Oct 2020 09:12:34 -0400 Subject: [PATCH 03/17] Clarify 2.7 is EOL --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0d71e0b..2733705 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ TIMBER (Tree Interface for Making Binned Events with RDataFrame) is an easy-to-u Default arguments assume the use of the NanoAOD format but any ROOT TTree can be processed. ## Quick install -Python 3 is recommended since 2.7 is now no longer supported. Remember to make sure your +Python 3 is recommended since Python 2.7 reached end-of-life on January 1st, 2020. Remember to make sure your ROOT version has been built with Python 3 compatibility. For information on how to do this, see [this explanation](doxysetup/Python3.md). Working in a virtual environment is also recommended. Below are the commands for using virtualenv but From 07f6c50272d36250c0928d3bbc2d3c53671a9b92 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 10:33:09 -0400 Subject: [PATCH 04/17] Update Analyzer docs part1 --- TIMBER/Analyzer.py | 402 +++++++++------ docs/annotated.html | 14 +- ...m_b_e_r_1_1_analyzer_1_1_node-members.html | 18 +- ...ass_t_i_m_b_e_r_1_1_analyzer_1_1_node.html | 468 +++++++++++++++++- ..._e_r_1_1_analyzer_1_1analyzer-members.html | 13 +- ..._t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html | 395 ++++++++++----- ...___analyzer_1_1_test_analyzer-members.html | 96 ++++ ...lasstest___analyzer_1_1_test_analyzer.html | 138 ++++++ ...test___common_1_1_common_test-members.html | 89 ++++ docs/classtest___common_1_1_common_test.html | 112 +++++ .../dir_13e138d54eb8818da29c3992edef070a.html | 80 +++ docs/hierarchy.html | 30 +- docs/index.html | 2 +- docs/inherit_graph_0.map | 2 +- docs/inherit_graph_0.md5 | 2 +- docs/inherit_graph_0.png | Bin 1509 -> 1182 bytes docs/inherit_graph_1.map | 2 +- docs/inherit_graph_1.md5 | 2 +- docs/inherit_graph_1.png | Bin 1897 -> 1364 bytes docs/inherit_graph_11.map | 2 +- docs/inherit_graph_11.md5 | 2 +- docs/inherit_graph_11.png | Bin 911 -> 1332 bytes docs/inherit_graph_12.map | 8 +- docs/inherit_graph_12.md5 | 2 +- docs/inherit_graph_12.png | Bin 1542 -> 19535 bytes docs/inherit_graph_2.map | 2 +- docs/inherit_graph_2.md5 | 2 +- docs/inherit_graph_2.png | Bin 2362 -> 1542 bytes docs/inherit_graph_3.map | 2 +- docs/inherit_graph_3.md5 | 2 +- docs/inherit_graph_3.png | Bin 3226 -> 1182 bytes docs/inherit_graph_4.map | 8 +- docs/inherit_graph_4.md5 | 2 +- docs/inherit_graph_4.png | Bin 1315 -> 19535 bytes docs/inherits.html | 40 +- docs/search/all_0.js | 2 +- docs/search/all_1.js | 4 +- docs/search/all_10.js | 1 - docs/search/all_2.js | 6 +- docs/search/all_3.js | 4 +- docs/search/all_4.js | 4 +- docs/search/all_b.js | 1 + docs/search/all_e.js | 1 - docs/search/all_f.js | 5 +- docs/search/classes_1.js | 7 +- docs/search/classes_2.js | 4 +- docs/search/classes_3.js | 2 +- docs/search/classes_4.js | 2 +- docs/search/classes_5.js | 2 +- docs/search/classes_6.js | 2 +- docs/search/classes_7.js | 3 +- docs/search/classes_8.js | 2 +- docs/search/functions_0.js | 2 +- docs/search/functions_1.js | 4 +- docs/search/functions_2.js | 4 +- docs/search/functions_3.js | 4 +- docs/search/functions_a.js | 5 +- docs/search/searchdata.js | 4 +- docs/search/variables_5.js | 2 +- docs/search/variables_6.js | 2 +- docs/search/variables_7.js | 2 +- docs/search/variables_8.js | 3 +- doxysetup/Doxyfile | 2 + 63 files changed, 1586 insertions(+), 437 deletions(-) create mode 100644 docs/classtest___analyzer_1_1_test_analyzer-members.html create mode 100644 docs/classtest___analyzer_1_1_test_analyzer.html create mode 100644 docs/classtest___common_1_1_common_test-members.html create mode 100644 docs/classtest___common_1_1_common_test.html create mode 100644 docs/dir_13e138d54eb8818da29c3992edef070a.html diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index 90fcf4d..8661896 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -28,7 +28,7 @@ class analyzer(object): where nodes are an RDF instance and an action (or series of actions) can transform the RDF to create a new node(s). When using class functions to perform actions, an active node will always be tracked so that the next action uses - the active node and assigns the output node as the new active node""" + the active node and assigns the output node as the new #ActiveNode""" def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): """ Constructor. Setups the tracking of actions on an RDataFrame as nodes. Also @@ -50,27 +50,27 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): ## @var BaseDataFrame # ROOT.RDataFrame # - # Initial RDataFrame - no modifications + # Initial RDataFrame - no modifications. ## @var BaseNode # Node # - # Initial Node - no modifications + # Initial Node - no modifications. ## @var DataFrames # dict # - # All data frames + # All data frames. ## @var Corrections # dict # - # All corrections added to track + # All corrections added to track. ## @var isData # bool # - # Is data (true) or simulation (false) based on existence of _genEventCount branch + # Is data (true) or simulation (false) based on existence of _genEventCount branch. ## @var preV6 # bool # - # Is pre-NanoAODv6 (true) or not (false) based on existence of _genEventCount branch + # Is pre-NanoAODv6 (true) or not (false) based on existence of _genEventCount branch. ## @var genEventCount # int # @@ -152,7 +152,7 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): def DataFrame(self): ''' Returns: - RDataFrame: Dataframe for the active node + RDataFrame: Dataframe for the active node. ''' return self.ActiveNode.DataFrame @@ -161,68 +161,85 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') self.ActiveNode.Snapshot(columns,outfilename,treename,lazy,openOption) def SetActiveNode(self,node): - """Sets the active node. + '''Sets the active node. Args: - node: Node to set as #ActiveNode + node (Node): Node to set as #ActiveNode. + + Raises: + ValueError: If argument type is not Node. Returns: - New #ActiveNode - """ + Node: New #ActiveNode. + ''' if not isinstance(node,Node): raise ValueError('SetActiveNode() does not support argument of type %s. Please provide a Node.'%(type(node))) else: self.ActiveNode = node return self.ActiveNode def GetActiveNode(self): - """Get the active node. + '''Get the active node. Returns: - Value of #ActiveNode (Node) - """ + Node: Value of #ActiveNode. + ''' return self.ActiveNode def GetBaseNode(self): - """Get the base node. + '''Get the base node. Returns: - Value of #BaseNode (Node) - """ + Node: Value of #BaseNode. + ''' return self.BaseNode def TrackNode(self,node): - """Add a node to track. - - Will add the node to #DataFrames dictionary with key node.name. Will raise ValueError if attempting to overwrite an already tracked Node. + '''Add a node to track. + Will add the node to #DataFrames dictionary with key node.name. Args: - node (Node): Node to start tracking. + node (Node): Node to start tracking. + + Raises: + NameError: If attempting to track nodes of the same name. + TypeError: If argument type is not Node. Returns: None - - """ - + ''' if isinstance(node,Node): if node.name in self.GetTrackedNodeNames(): - raise ValueError('Attempting to track a node with the same name as one that is already being tracked (%s). Please provide a unique node.'%(node.name)) + raise NameError('Attempting to track a node with the same name as one that is already being tracked (%s). Please provide a unique node.'%(node.name)) self.AllNodes.append(node) else: raise TypeError('TrackNode() does not support arguments of type %s. Please provide a Node.'%(type(node))) def GetTrackedNodeNames(self): + ''' + Returns: + [str]: List of names of nodes being tracked. + ''' return [n.name for n in self.AllNodes] def GetCorrectionNames(self): - """Get names of all corrections being tracked. + '''Get names of all corrections being tracked. Returns: - List of Correction keys/names - """ + [str]: List of Correction keys/names. + ''' return self.Corrections.keys() def FilterColumnNames(self,columns,node=None): - '''Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node''' + '''Takes a list of possible columns and returns only those that + exist in the RDataFrame of the supplied node. + + Args: + columns ([str]): List of column names (str) + node (Node, optional): Node to compare against. Defaults to #BaseNode. + + Returns: + [str]: List of column names that union with those in the RDataFrame. + ''' if node == None: node = self.BaseNode cols_in_node = node.DataFrame.GetColumnNames() out = [] @@ -236,8 +253,13 @@ def ConcatCols(self,colnames,val='1',connector='&&'): '''Concatenates a list of column names evaluating to a common `val` (usually 1 or 0) with some `connector` (boolean logic operator). + Args: + colnames ([str]): List of column names (str). + val (str, optional): Value to test equality of all columns. Defaults to '1'. + connector (str, optional): C++ boolean logic operator between column equality checks. Defaults to '&&'. + Returns: - str: List concatenated as a string with the assigned evaluations (`val`) and `connector` + str: Concatenated string of the entire evaluation that in C++ will return a bool. ''' concat = '' for i,c in enumerate(colnames): @@ -252,8 +274,8 @@ def ConcatCols(self,colnames,val='1',connector='&&'): return concat def GetTriggerString(self,trigList): - '''Checks input list for missing triggers and drops those missing (FilterColumnNames) - and then concatenates those remaining into an OR string (ConcatCols) + '''Checks input list for missing triggers and drops those missing (#FilterColumnNames) + and then concatenates those remaining into an OR (`||`) string (#ConcatCols) Args: trigList [str]: List of trigger names @@ -267,8 +289,8 @@ def GetTriggerString(self,trigList): return trig_string def GetFlagString(self,flagList): - '''Checks input list for missing flags and drops those missing (FilterColumnNames) - and then concatenates those remaining into an AND string (ConcatCols) + '''Checks input list for missing flags and drops those missing (#FilterColumnNames) + and then concatenates those remaining into an AND string (#ConcatCols) Args: flagList [str]: List of flag names @@ -282,11 +304,11 @@ def GetFlagString(self,flagList): return flag_string def GetFileName(self): - """Get input file name. + '''Get input file name. Returns: - File name - """ + str: File name + ''' return self.__fileName #------------------------------------------------------------# @@ -294,20 +316,21 @@ def GetFileName(self): # benefit of class keeping track of an Active Node (reset by # # each action and used by default). # #------------------------------------------------------------# - def Cut(self,name='',cuts='',node=None): - """Apply a cut/filter to a provided node or the #ActiveNode by default. - + def Cut(self,name,cuts,node=None): + '''Apply a cut/filter to a provided node or the #ActiveNode by default. Will add the resulting node to tracking and set it as the #ActiveNode. Args: name (str): Name for the cut for internal tracking and later reference. - cuts (str,CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple C++ strings that evaluate as booleans. - node (Node): Node to apply the cut/filter. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + cuts (str,#CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans. + node (Node, optional): Node on which to apply the cut/filter. Defaults to #ActiveNode. - Returns: - New active Node. + Raises: + TypeError: If argument type is not Node. - """ + Returns: + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode newNode = node @@ -317,31 +340,30 @@ def Cut(self,name='',cuts='',node=None): newNode = newNode.Cut(c,cut) newNode.name = cuts.name+'__'+c self.TrackNode(newNode) - # newNode.name = cuts.name elif isinstance(cuts,str): newNode = newNode.Cut(name,cuts) self.TrackNode(newNode) else: raise TypeError("Second argument to Cut method must be a string of a single cut or of type CutGroup (which provides an OrderedDict).") - # self.TrackNode(newNode) return self.SetActiveNode(newNode) - def Define(self,name='',variables='',node=None): - """Defines a variable/column on top of a provided node or the #ActiveNode by default. - - Will add the resulting node to tracking and set it as the #ActiveNode + def Define(self,name,variables,node=None): + '''Defines a variable/column on top of a provided node or the #ActiveNode by default. + Will add the resulting node to tracking and set it as the #ActiveNode. Args: - name (str): Name for the column for internal tracking and later reference. - cuts (str,CutGroup): A one-line C++ string that evaluates to desired value to store or a VarGroup object which contains multiple C++ strings that evaluate to the desired value(s). - node (Node): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + cuts (str,#VarGroup): A one-line C++ string that evaluates to desired value to store + or a #VarGroup object which contains multiple actions that evaluate to the desired values. + node (Node, optional): Node to create the new variable/column on top of. Defaults to #ActiveNode. - Returns: - New active Node. + Raises: + TypeError: If argument type is not Node. - """ + Returns: + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode newNode = node @@ -363,16 +385,19 @@ def Define(self,name='',variables='',node=None): # Applies a bunch of action groups (cut or var) in one-shot in the order they are given def Apply(self,actionGroupList,node=None,trackEach=True): - """Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. + '''Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. Args: - actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. - node (Node): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + trackEach (bool, optional): [description]. Defaults to True. + + Raises: + TypeError: If argument type is not Node. Returns: - New active Node. - """ + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode newNode = node @@ -392,19 +417,18 @@ def Apply(self,actionGroupList,node=None,trackEach=True): return self.SetActiveNode(newNode) def Discriminate(self,name,discriminator,node=None,passAsActiveNode=None): - """Forks a node based upon a discriminator being True or False (#ActiveNode by default). + '''Forks a node based upon a discriminator being True or False (#ActiveNode by default). Args: name (str): Name for the discrimination for internal tracking and later reference. discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate for the forking of the node. - node (Node): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. - passAsActiveNode (bool): True if the #ActiveNode should be set to the node that passes the discriminator. + node (Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + passAsActiveNode (bool, optional): True if the #ActiveNode should be set to the node that passes the discriminator. False if the #ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the #ActiveNode does not change. Returns: - Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values. - - """ + dict: Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values. + ''' if node == None: node = self.ActiveNode newNodes = node.Discriminate(name,discriminator) @@ -422,18 +446,22 @@ def Discriminate(self,name,discriminator,node=None,passAsActiveNode=None): #---------------------# # Want to correct with analyzer class so we can track what corrections have been made for final weights and if we want to save them out in a group when snapshotting def AddCorrection(self,correction,evalArgs=[],node=None): - """Add a Correction to track. + '''Add a Correction to track. Sets new active node with all correction + variations calculated as new columns. Args: correction (Correction): Correction object to add. - evalArgs ([str]): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. + evalArgs ([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame. - node (Node): Node to add correction on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + node (Node, optional): Node to add correction on top of. Defaults to #ActiveNode. - Returns: - New active Node. + Raises: + TypeError: If argument types are not Node and Correction. + ValueError: If Correction type is not a weight or uncertainty. - """ + Returns: + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode # Quick type checking @@ -461,17 +489,17 @@ def AddCorrection(self,correction,evalArgs=[],node=None): # self.TrackNode(returnNode) return self.SetActiveNode(newNode) - def AddCorrections(self,correctionList=[],node=None): - """Add multiple Corrections to track. + def AddCorrections(self,correctionList,node=None): + '''Add multiple Corrections to track. Sets new #ActiveNode with all correction + variations calculated as new columns. Args: - correctionList (list(Correction)): List of Correction objects to add. - node (Node): Node to add corrections on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + correctionList ([Correction]): List of Correction objects to add. + node (Node, optional): [description]. Defaults to None. Returns: - New active Node. - - """ + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode newNode = node @@ -481,6 +509,18 @@ def AddCorrections(self,correctionList=[],node=None): return self.SetActiveNode(newNode) def __checkCorrections(self,correctionNames,dropList): + '''Does type checking and drops specified corrections by name. + + Args: + correctionNames ([str]): List of correction names to include. + dropList ([type]): List of correction names to drop. + + Raises: + ValueError: If lists aren't provided. + + Returns: + [str]: List of remaining correction names. + ''' # Quick type checking if correctionNames == None: correctionsToApply = self.Corrections.keys() elif not isinstance(correctionNames,list): @@ -499,7 +539,7 @@ def __checkCorrections(self,correctionNames,dropList): return correctionsToApply def MakeWeightCols(self,node=None,correctionNames=None,dropList=[]): - """Makes columns/variables to store total weights based on the Corrections that have been added. + '''Makes columns/variables to store total weights based on the Corrections that have been added. This function automates the calculation of the columns that store the nominal weight and the variation of weights based on the corrections in consideration. The nominal weight will be the product @@ -520,9 +560,8 @@ def MakeWeightCols(self,node=None,correctionNames=None,dropList=[]): are dropped from consideration. Returns: - New active Node. - - """ + Node: New #ActiveNode. + ''' if node == None: node = self.ActiveNode correctionsToApply = self.__checkCorrections(correctionNames,dropList) @@ -556,17 +595,16 @@ def MakeWeightCols(self,node=None,correctionNames=None,dropList=[]): return self.SetActiveNode(returnNode) def MakeTemplateHistos(self,templateHist,variables,node=None): - """Generates the uncertainty template histograms based on the weights created by MakeWeightCols(). + '''Generates the uncertainty template histograms based on the weights created by #MakeWeightCols(). Args: - templateHist (TH1,TH2,TH3): An TH1, TH2, or TH3 used as a template to create the histograms. - variables (list(str)): A list of the columns/variables to plot (["x","y","z"]). - node (Node): Node to plot histograms from. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + templateHist (TH1,TH2,TH3): A TH1, TH2, or TH3 used as a template to create the histograms. + variables ([str]): A list of the columns/variables to plot (ex. ["x","y","z"]). + node (Node): Node to plot histograms from. Defaults to #ActiveNode. Returns: - HistGroup object which stores the uncertainty template histograms. - - """ + HistGroup: Uncertainty template histograms. + ''' if node == None: node = self.ActiveNode out = HistGroup('Templates') @@ -606,19 +644,18 @@ def MakeTemplateHistos(self,templateHist,variables,node=None): # Draw templates together to see up/down effects against nominal # #----------------------------------------------------------------# def DrawTemplates(self,hGroup,saveLocation,projection='X',projectionArgs=(),fileType='pdf'): - """Draw the template uncertainty histograms created by MakeTemplateHistos(). + '''Draw the template uncertainty histograms created by #MakeTemplateHistos(). Args: - hGroup (HistGroup): A HistGroup object storing the uncertainty template histograms. + hGroup (HistGroup): Uncertainty template histograms. saveLocation (str): Path to folder to save histograms. - projection (str): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. - projectionArgs (tuple): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). - fileType (str): File type - "pdf", "png", etc (must be supported by TCanvas.Print()). + projection (str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. + projectionArgs (tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). + fileType (str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()). Returns: None - - """ + ''' ROOT.gStyle.SetOptStat(0) canvas = ROOT.TCanvas('c','',800,700) @@ -673,17 +710,19 @@ def DrawTemplates(self,hGroup,saveLocation,projection='X',projectionArgs=(),file # cut that gets dropped # #----------------------------------------------# def Nminus1(self,node,cutgroup): - """Print a PDF image of the node structure of the analysis. - Requires python graphviz package (`pip install graphviz`) + '''Create an N-1 tree structure of nodes building off of `node` + with the N cuts from `cutgroup`. + + The structure is optimized so that as many actions are shared as possible + so that the N different nodes can be made. Use #PrintNodeTree() to visualize. Args: - cutgroup (CutGroup): CutGroup that you'd like to scan. + node (Node): Node to build on. + cutgroup (CutGroup): Group of N cuts to apply. Returns: - Dictionary with the final nodes - - """ - + dict: N nodes in dictionary with keys indicating the cut that was not applied. + ''' # Initialize print ('Performing N-1 scan for CutGroup %s'%cutgroup.name) @@ -712,15 +751,16 @@ def Nminus1(self,node,cutgroup): return nminusones def PrintNodeTree(self,outfilename,verbose=False): - """Print a PDF image of the node structure of the analysis. Requires python graphviz package (`pip install graphviz`) + '''Print a PDF image of the node structure of the analysis. + Requires python graphviz package which should be an installed dependency. Args: outfilename (str): Name of output PDF file. + verbose (bool, optional): Turns on verbose node labels. Defaults to False. Returns: None - - """ + ''' from graphviz import Digraph dot = Digraph(comment='Node processing tree') for node in self.AllNodes: @@ -738,69 +778,149 @@ def PrintNodeTree(self,outfilename,verbose=False): # Node Class # ############## class Node(object): - """Class to represent nodes in the DataFrame processing graph. Can make new nodes via Define, Cut, and Discriminate and setup relations between nodes (done automatically via Define, Cut, Discriminate)""" - def __init__(self, name, DataFrame, parent=None, children=[],action=''): + '''Class to represent nodes in the DataFrame processing graph. + Can make new nodes via Define, Cut, and Discriminate and setup + relations between nodes (done automatically via Define, Cut, Discriminate)''' + def __init__(self, name, DataFrame, action='', children=[]): + '''Constructor. Holds the RDataFrame and other associated information + for tracking in the #analyzer(). + + Methods which act on the RDataFrame always return a new node + since RDataFrame is not modified in place. + + Args: + name (str): Name for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer. + DataFrame (RDataFrame): Dataframe to track. + children ([Node], optional): Child nodes if they exist. Defaults to []. + action (str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame. + ''' super(Node, self).__init__() self.DataFrame = DataFrame self.name = name self.action = action - # self.parent = parent # None or specified - self.children = children # list of length 0, 1, or 2 + self.children = children def Clone(self,name=''): - if name == '':return Node(self.name,self.DataFrame,parent=[],children=[],action=self.action) - else: return Node(name,self.DataFrame,parent=[],children=[],action=self.action) + '''Clones Node instance without child information and with new name if specified. + + Args: + name (str, optional): Name for clone. Defaults to current name. + + Returns: + Node: Clone of current instance. + ''' + if name == '':return Node(self.name,self.DataFrame,children=[],action=self.action) + else: return Node(name,self.DataFrame,children=[],action=self.action) - # Set parent of type Node - # def SetParent(self,parent): - # if isinstance(parent,Node): self.parent = parent - # else: raise TypeError('Parent is not an instance of Node class for node %s'%self.name) + def SetChild(self,child,overwrite=False): + '''Set one of child for the node. - # Set one child of type Node - def SetChild(self,child,overwrite=False,silence=False): + Args: + child (Node): Child node to add. + overwrite (bool, optional): Overwrites all current children stored. Defaults to False. + + Raises: + TypeError: If argument type is not Node. + ''' if overwrite: self.children = [] - # if len(children > 1): raise ValueError("More than two children are trying to be added node %s. You may use the overwrite option to erase current children or find your bug."%self.name) - # if len(children == 1) and silence == False: raw_input('WARNING: One child is already specified for node %s and you are attempting to add another (max 2). Press enter to confirm and continue.'%self.name) - if isinstance(child,Node): self.children.append(child) - else: raise TypeError('Child is not an instance of Node class for node %s' %self.name) + if isinstance(child,Node): + if child.name not in [c.name for c in self.children]: + self.children.append(child) + else: + raise NameError('Attempting to add child node "%s" but one with this name already exists in node "%s".'%(child.name, self.name)) + else: + raise TypeError('Child is not an instance of Node class for node %s' %self.name) - # Set children of type Node def SetChildren(self,children,overwrite=False): + '''Set multiple children for the node. + + Args: + children ([Node], {str:Node}): List of children or dictionary of children. + overwrite (bool, optional): Overwrites all current children stored. Defaults to False. + + Raises: + TypeError: If argument type is not dict or list of Node. + ''' if overwrite: self.children = [] - # if len(children > 0): raise ValueError("More than two children are trying to be added node %s. You may use the overwrite option to erase current children or find your bug."%self.name) - if isinstance(children,dict) and 'pass' in children.keys() and 'fail' in children.keys() and len(children.keys()) == 2: - self.SetChild(children['pass']) - self.SetChild(children['fail']) + if isinstance(children,dict): + for c in children.keys(): + if isinstance(child,Node): + self.SetChild(children[c]) + else: + raise TypeError('Child is not an instance of Node class for node %s' %self.name) + + elif isinstance(children,list): + for c in children: + if isinstance(child,node): + self.SetChild(c) + else: + raise TypeError('Child is not an instance of Node class for node %s' %self.name) else: - raise TypeError('Attempting to add a dictionary of children of incorrect format. Argument must be a dict of format {"pass":class.Node,"fail":class.Node}') + raise TypeError('Attempting to add chidren that are not in a list or dict.') - # Define a new column to calculate def Define(self,name,var): + '''Produces a new Node with the provided variable/column added. + + Args: + name (str): Name for the column for internal tracking and later reference. + cuts (str): A one-line C++ string that evaluates to desired value to store. + + Returns: + Node: New Node object with new column added. + ''' print('Defining %s: %s' %(name,var)) - newNode = Node(name,self.DataFrame.Define(name,var),parent=self,children=[],action=var) + newNode = Node(name,self.DataFrame.Define(name,var),children=[],action=var) self.SetChild(newNode) return newNode - # Define a new cut to make def Cut(self,name,cut): + '''Produces a new Node with the provided cut/filter applied. + + Args: + name (str): Name for the cut for internal tracking and later reference. + cuts (str): A one-line C++ string that evaluates as a boolean. + + Returns: + Node: New #ActiveNode. + ''' print('Filtering %s: %s' %(name,cut)) - newNode = Node(name,self.DataFrame.Filter(cut,name),parent=self,children=[],action=cut) + newNode = Node(name,self.DataFrame.Filter(cut,name),children=[],action=cut) self.SetChild(newNode) return newNode - # Discriminate based on a discriminator def Discriminate(self,name,discriminator): + '''Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False. + + Args: + name (str): Name for the discrimination for internal tracking and later reference. + discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate on. + + Returns: + dict: Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values. + ''' passfail = { - "pass":Node(name+"_pass",self.DataFrame.Filter(discriminator,name+"_pass"),parent=self,children=[],action=discriminator), - "fail":Node(name+"_fail",self.DataFrame.Filter("!("+discriminator+")",name+"_fail"),parent=self,children=[],action="!("+discriminator+")") + "pass":Node(name+"_pass",self.DataFrame.Filter(discriminator,name+"_pass"),children=[],action=discriminator), + "fail":Node(name+"_fail",self.DataFrame.Filter("!("+discriminator+")",name+"_fail"),children=[],action="!("+discriminator+")") } self.SetChildren(passfail) return passfail - # Applies a bunch of action groups (cut or var) in one-shot in the order they are given def Apply(self,actiongrouplist): + '''Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. + + Args: + actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. + node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + trackEach (bool, optional): [description]. Defaults to True. + + Raises: + TypeError: If argument type is not Node. + + Returns: + Node: New #ActiveNode. + ''' if type(actiongrouplist) != list: actiongrouplist = [actiongrouplist] node = self for ag in actiongrouplist: @@ -844,12 +964,10 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') elif type(columns) == str: self.DataFrame.Snapshot(treename,outfilename,columns,opts) else: - # column_vec = ROOT.std.vector('string')() column_vec = '' for c in columns: column_vec += c+'|' column_vec = column_vec[:-1] - # column_vec.push_back(c) self.DataFrame.Snapshot(treename,outfilename,column_vec,opts) ############################## diff --git a/docs/annotated.html b/docs/annotated.html index 5a3e0e5..ba950dc 100644 --- a/docs/annotated.html +++ b/docs/annotated.html @@ -76,16 +76,10 @@  CHistGroupStores histograms with dedicated function to use TH1/2/3 methods in a batch  CNodeClass to represent nodes in the DataFrame processing graph  CVarGroupStores Define actions - CBTagCalibration - ▼CBTagCalibrationReader - ▼CBTagCalibrationReaderImpl - CTmpEntry - ▼CBTagEntry - CParameters - CCollection - CJetRecalibrator - CPDFweight_uncert - CSJBtag_SF + CCollection + CJetRecalibrator + CPDFweight_uncert + CSJBtag_SF diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html index 4babcaf..c5a9582 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html @@ -72,19 +72,19 @@

This is the complete list of members for TIMBER.Analyzer.Node, including all inherited members.

- + - + - - + + - - + + - - - + + +
__init__(self, name, DataFrame, parent=None, children=[], action='') (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
__init__(self, name, DataFrame, action='', children=[])TIMBER.Analyzer.Node
action (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Apply(self, actiongrouplist) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Apply(self, actiongrouplist)TIMBER.Analyzer.Node
children (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Clone(self, name='') (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Cut(self, name, cut) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Clone(self, name='')TIMBER.Analyzer.Node
Cut(self, name, cut)TIMBER.Analyzer.Node
DataFrame (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Define(self, name, var) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Discriminate(self, name, discriminator) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Define(self, name, var)TIMBER.Analyzer.Node
Discriminate(self, name, discriminator)TIMBER.Analyzer.Node
name (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
SetChild(self, child, overwrite=False, silence=False) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
SetChildren(self, children, overwrite=False) (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE') (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
SetChild(self, child, overwrite=False)TIMBER.Analyzer.Node
SetChildren(self, children, overwrite=False)TIMBER.Analyzer.Node
Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.Node
diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html index 8222768..196aa10 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html @@ -89,32 +89,32 @@ - - - + + + + + - - - + + + + + - + + - + + - + + - + + - + +

Public Member Functions

-def __init__ (self, name, DataFrame, parent=None, children=[], action='')
 
-def Clone (self, name='')
def __init__ (self, name, DataFrame, action='', children=[])
 Constructor. More...
 
def Clone (self, name='')
 Clones Node instance without child information and with new name if specified. More...
 
-def SetChild (self, child, overwrite=False, silence=False)
 
-def SetChildren (self, children, overwrite=False)
def SetChild (self, child, overwrite=False)
 Set one of child for the node. More...
 
def SetChildren (self, children, overwrite=False)
 Set multiple children for the node. More...
 
-def Define (self, name, var)
def Define (self, name, var)
 Produces a new Node with the provided variable/column added. More...
 
-def Cut (self, name, cut)
def Cut (self, name, cut)
 Produces a new Node with the provided cut/filter applied. More...
 
-def Discriminate (self, name, discriminator)
def Discriminate (self, name, discriminator)
 Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False. More...
 
-def Apply (self, actiongrouplist)
def Apply (self, actiongrouplist)
 Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. More...
 
-def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
 Takes a snapshot of the RDataFrame corresponding to this Node. More...
 
- + @@ -329,14 +287,16 @@

Add multiple Corrections to track.

+

Sets new ActiveNode with all correction variations calculated as new columns.

Parameters

@@ -135,7 +135,433 @@

Detailed Description

Class to represent nodes in the DataFrame processing graph.

Can make new nodes via Define, Cut, and Discriminate and setup relations between nodes (done automatically via Define, Cut, Discriminate)

-
The documentation for this class was generated from the following file:
    +

    Constructor & Destructor Documentation

    + +

    ◆ __init__()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.__init__ ( self,
     name,
     DataFrame,
     action = '',
     children = [] 
    )
    +
    + +

    Constructor.

    +

    Holds the RDataFrame and other associated information for tracking in the #analyzer().

    +

    Methods which act on the RDataFrame always return a new node since RDataFrame is not modified in place.

    +
    Parameters
    + + + +
    nameName for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer.
    DataFrameDataframe to track. children ([Node], optional): Child nodes if they exist. Defaults to []. action (str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame.
    +
    +
    + +
    +
    +

    Member Function Documentation

    + +

    ◆ Apply()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Apply ( self,
     actiongrouplist 
    )
    +
    + +

    Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default.

    +

    actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. trackEach (bool, optional): [description]. Defaults to True.

    +
    Exceptions
    + + +
    TypeErrorIf argument type is not Node.
    +
    +
    +
    Returns
    +
    +Node New #ActiveNode.
    + +
    +
    + +

    ◆ Clone()

    + +
    +
    + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Clone ( self,
     name = '' 
    )
    +
    + +

    Clones Node instance without child information and with new name if specified.

    +

    name (str, optional): Name for clone. Defaults to current name.

    +
    Returns
    +
    +Node Clone of current instance.
    + +
    +
    + +

    ◆ Cut()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Cut ( self,
     name,
     cut 
    )
    +
    + +

    Produces a new Node with the provided cut/filter applied.

    +
    Parameters
    + + + +
    nameName for the cut for internal tracking and later reference.
    cutsA one-line C++ string that evaluates as a boolean.
    +
    +
    +
    Returns
    +
    +Node New #ActiveNode.
    + +
    +
    + +

    ◆ Define()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Define ( self,
     name,
     var 
    )
    +
    + +

    Produces a new Node with the provided variable/column added.

    +
    Parameters
    + + + +
    nameName for the column for internal tracking and later reference.
    cutsA one-line C++ string that evaluates to desired value to store.
    +
    +
    +
    Returns
    +
    +Node New Node object with new column added.
    + +
    +
    + +

    ◆ Discriminate()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Discriminate ( self,
     name,
     discriminator 
    )
    +
    + +

    Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False.

    +
    Parameters
    + + + +
    nameName for the discrimination for internal tracking and later reference.
    discriminatorA one-line C++ string that evaluates as a boolean to discriminate on.
    +
    +
    +
    Returns
    +
    +dict Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values.
    + +
    +
    + +

    ◆ SetChild()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.SetChild ( self,
     child,
     overwrite = False 
    )
    +
    + +

    Set one of child for the node.

    +
    Parameters
    + + +
    childChild node to add. overwrite (bool, optional): Overwrites all current children stored. Defaults to False.
    +
    +
    +
    Exceptions
    + + +
    TypeErrorIf argument type is not Node.
    +
    +
    + +
    +
    + +

    ◆ SetChildren()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.SetChildren ( self,
     children,
     overwrite = False 
    )
    +
    + +

    Set multiple children for the node.

    +

    children ([Node], {str:Node}): List of children or dictionary of children. overwrite (bool, optional): Overwrites all current children stored. Defaults to False.

    +
    Exceptions
    + + +
    TypeErrorIf argument type is not dict or list of Node.
    +
    +
    + +
    +
    + +

    ◆ Snapshot()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Node.Snapshot ( self,
     columns,
     outfilename,
     treename,
     lazy = False,
     openOption = 'RECREATE' 
    )
    +
    + +

    Takes a snapshot of the RDataFrame corresponding to this Node.

    +

    Compression algorithm set to 1 (ZLIB) and compression level are set to 1.

    +
            columns ([str] or str): List of columns to keep (str) with regex matching.
+            Provide single string 'all' to include all columns.
+
    Parameters
    + + + +
    outfilenameName of the output file
    treenameName of the output TTree lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. openOption (str, optional): TFile opening options. Defaults to 'RECREATE'.
    +
    +
    + +
    +
    +
    The documentation for this class was generated from the following file:
    • TIMBER/Analyzer.py
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html index c9d525f..fcf818e 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html @@ -72,18 +72,18 @@

    This is the complete list of members for TIMBER.Analyzer.analyzer, including all inherited members.

    - + - + - + - + @@ -96,14 +96,15 @@ - + - + +
    __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs")TIMBER.Analyzer.analyzer
    __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs") (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
    ActiveNodeTIMBER.Analyzer.analyzer
    AddCorrection(self, correction, evalArgs=[], node=None)TIMBER.Analyzer.analyzer
    AddCorrections(self, correctionList=[], node=None)TIMBER.Analyzer.analyzer
    AddCorrections(self, correctionList, node=None)TIMBER.Analyzer.analyzer
    AllNodes (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
    Apply(self, actionGroupList, node=None, trackEach=True)TIMBER.Analyzer.analyzer
    BaseNodeTIMBER.Analyzer.analyzer
    ConcatCols(self, colnames, val='1', connector='&&')TIMBER.Analyzer.analyzer
    CorrectionsTIMBER.Analyzer.analyzer
    Cut(self, name='', cuts='', node=None)TIMBER.Analyzer.analyzer
    Cut(self, name, cuts, node=None)TIMBER.Analyzer.analyzer
    DataFrame(self)TIMBER.Analyzer.analyzer
    Define(self, name='', variables='', node=None)TIMBER.Analyzer.analyzer
    Define(self, name, variables, node=None)TIMBER.Analyzer.analyzer
    Discriminate(self, name, discriminator, node=None, passAsActiveNode=None)TIMBER.Analyzer.analyzer
    DrawTemplates(self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')TIMBER.Analyzer.analyzer
    FilterColumnNames(self, columns, node=None)TIMBER.Analyzer.analyzer
    GetTrackedNodeNames(self) (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
    GetTriggerString(self, trigList)TIMBER.Analyzer.analyzer
    isDataTIMBER.Analyzer.analyzer
    lhaid (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
    lhaidTIMBER.Analyzer.analyzer
    MakeTemplateHistos(self, templateHist, variables, node=None)TIMBER.Analyzer.analyzer
    MakeWeightCols(self, node=None, correctionNames=None, dropList=[])TIMBER.Analyzer.analyzer
    Nminus1(self, node, cutgroup)TIMBER.Analyzer.analyzer
    preV6TIMBER.Analyzer.analyzer
    PrintNodeTree(self, outfilename, verbose=False)TIMBER.Analyzer.analyzer
    SetActiveNode(self, node)TIMBER.Analyzer.analyzer
    TrackNode(self, node)TIMBER.Analyzer.analyzer
    Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.analyzer
    TrackNode(self, node)TIMBER.Analyzer.analyzer
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html index 21a9326..10f2679 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html @@ -89,11 +89,13 @@ - - + + + @@ -112,28 +114,27 @@ - - + + - + - + - - - - - - + + + + + + @@ -143,9 +144,9 @@ - - - + + + @@ -156,7 +157,7 @@ - + @@ -182,8 +183,8 @@ - + + @@ -192,59 +193,8 @@

    Detailed Description

    Main class for TIMBER.

    Implements an interface with ROOT's RDataFrame (RDF). The default values assume the data is in NanoAOD format. However, any TTree can be used. The class works on the basis of nodes and actions where nodes are an RDF instance and an action (or series of actions) can transform the RDF to create a new node(s).

    -

    When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new active node

    -

    Constructor & Destructor Documentation

    - -

    ◆ __init__()

    - -
    -
    -

    Public Member Functions

    def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
     Constructor. More...
    +def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
     
    def DataFrame (self)
     
    def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
     
    def SetActiveNode (self, node)
     Sets the active node. More...
     
    def GetCorrectionNames (self)
     Get names of all corrections being tracked. More...
     
    -def FilterColumnNames (self, columns, node=None)
     Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node.
    def FilterColumnNames (self, columns, node=None)
     Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node. More...
     
    def ConcatCols (self, colnames, val='1', connector='&&')
     Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator). More...
     
    def GetTriggerString (self, trigList)
     Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR string (ConcatCols) More...
     Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string (ConcatCols) More...
     
    def GetFlagString (self, flagList)
     Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols) More...
     Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols) More...
     
    def GetFileName (self)
     Get input file name. More...
     
    def Cut (self, name='', cuts='', node=None)
     Apply a cut/filter to a provided node or the ActiveNode by default. More...
     
    def Define (self, name='', variables='', node=None)
     Defines a variable/column on top of a provided node or the ActiveNode by default. More...
     
    def Cut (self, name, cuts, node=None)
     Apply a cut/filter to a provided node or the ActiveNode by default. More...
     
    def Define (self, name, variables, node=None)
     Defines a variable/column on top of a provided node or the ActiveNode by default. More...
     
    def Apply (self, actionGroupList, node=None, trackEach=True)
     Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default. More...
     
    def AddCorrection (self, correction, evalArgs=[], node=None)
     Add a Correction to track. More...
     
    def AddCorrections (self, correctionList=[], node=None)
     Add multiple Corrections to track. More...
     
    def AddCorrections (self, correctionList, node=None)
     Add multiple Corrections to track. More...
     
    def MakeWeightCols (self, node=None, correctionNames=None, dropList=[])
     Makes columns/variables to store total weights based on the Corrections that have been added. More...
     
     Draw the template uncertainty histograms created by MakeTemplateHistos(). More...
     
    def Nminus1 (self, node, cutgroup)
     Print a PDF image of the node structure of the analysis. More...
     Create an N-1 tree structure of nodes building off of node with the N cuts from cutgroup. More...
     
    def PrintNodeTree (self, outfilename, verbose=False)
     Print a PDF image of the node structure of the analysis. More...
     genEventCount
     int More...
     
    - lhaid
     lhaid
     int More...
     
     ActiveNode
     Node. More...
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    def TIMBER.Analyzer.analyzer.__init__ ( self,
     fileName,
     eventsTreeName = "Events",
     runTreeName = "Runs" 
    )
    -
    - -

    Constructor.

    -
    Parameters
    - - - - -
    fileNameA ROOT file path or the path to a txt file which contains several ROOT file paths separated by new line characters.
    eventsTreeNameName of TTree in fileName where events are stored. Defaults to "Events" (for NanoAOD)
    runTreeNameNAme of TTree in fileName where run information is stored (for generated event info in simulation). Defaults to "Runs" (for NanoAOD)
    -
    -
    - -
    - -

    Member Function Documentation

    +

    When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new ActiveNode

    +

    Member Function Documentation

    ◆ AddCorrection()

    @@ -284,20 +234,28 @@

    Add a Correction to track.

    +

    Sets new active node with all correction variations calculated as new columns.

    Parameters
    - - - +
    correctionCorrection object to add.
    evalArgsList of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame.
    nodeNode to add correction on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
    correctionCorrection object to add. evalArgs ([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame. node (Node, optional): Node to add correction on top of. Defaults to ActiveNode.
    -
    Returns
    New active Node.
    +
    Exceptions
    + + + +
    TypeErrorIf argument types are not Node and Correction.
    ValueErrorIf Correction type is not a weight or uncertainty.
    +
    +
    +
    Returns
    +
    +Node New ActiveNode.
    - -

    ◆ AddCorrections()

    + +

    ◆ AddCorrections()

    @@ -312,7 +270,7 @@

 correctionList = [], correctionList,
- - +
correctionListList of Correction objects to add.
nodeNode to add corrections on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
correctionListList of Correction objects to add. node (Node, optional): [description]. Defaults to None.
-
Returns
New active Node.
+
Returns
+
+Node New ActiveNode.
@@ -379,13 +339,16 @@

Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default.

-

actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node.

Parameters
- - +

actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode. trackEach (bool, optional): [description]. Defaults to True.

+
Exceptions
+
nodeNode to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
+
TypeErrorIf argument type is not Node.
-
Returns
New active Node.
+
Returns
+
+Node New ActiveNode.
@@ -428,14 +391,20 @@

Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator).

+
Parameters
+ + +
colnamesList of column names (str). val (str, optional): Value to test equality of all columns. Defaults to '1'. connector (str, optional): C++ boolean logic operator between column equality checks. Defaults to '&&'.
+
+
Returns
-str List concatenated as a string with the assigned evaluations (val) and connector
+str Concatenated string of the entire evaluation that in C++ will return a bool. - -

◆ Cut()

+ +

◆ Cut()

@@ -450,13 +419,13 @@

  - name = '', + name,   - cuts = '', + cuts, @@ -477,12 +446,19 @@

Parameters
- - + +
nameName for the cut for internal tracking and later reference.
cutsA one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple C++ strings that evaluate as booleans.
nodeNode to apply the cut/filter. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
cutsA one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans. node (Node, optional): Node on which to apply the cut/filter. Defaults to ActiveNode.
+
+ +
Exceptions
+ +
TypeErrorIf argument type is not Node.
-
Returns
New active Node.
+
Returns
+
+Node New ActiveNode.

@@ -503,12 +479,12 @@

Returns
-RDataFrame Dataframe for the active node
+RDataFrame Dataframe for the active node. - -

◆ Define()

+ +

◆ Define()

@@ -523,13 +499,13 @@

  - name = '', + name,   - variables = '', + variables, @@ -546,16 +522,23 @@

Defines a variable/column on top of a provided node or the ActiveNode by default.

-

Will add the resulting node to tracking and set it as the ActiveNode

+

Will add the resulting node to tracking and set it as the ActiveNode.

Parameters
- - +
nameName for the column for internal tracking and later reference.
cutsA one-line C++ string that evaluates to desired value to store or a VarGroup object which contains multiple C++ strings that evaluate to the desired value(s).
nodeNode to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
cutsA one-line C++ string that evaluates to desired value to store or a #VarGroup object which contains multiple actions that evaluate to the desired values. node (Node, optional): Node to create the new variable/column on top of. Defaults to ActiveNode.
-
Returns
New active Node.
+
Exceptions
+ + +
TypeErrorIf argument type is not Node.
+
+
+
Returns
+
+Node New ActiveNode.

@@ -607,13 +590,13 @@

Parameters
- - - +
nameName for the discrimination for internal tracking and later reference.
discriminatorA one-line C++ string that evaluates as a boolean to discriminate for the forking of the node.
nodeNode to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
passAsActiveNodeTrue if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
discriminatorA one-line C++ string that evaluates as a boolean to discriminate for the forking of the node. node (Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode. passAsActiveNode (bool, optional): True if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
-
Returns
Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values.
+
Returns
+
+dict Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values.
@@ -670,11 +653,8 @@

MakeTemplateHistos().

Parameters
- - - - - + +
hGroupA HistGroup object storing the uncertainty template histograms.
saveLocationPath to folder to save histograms.
projection"X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D.
projectionArgsA tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z).
fileTypeFile type - "pdf", "png", etc (must be supported by TCanvas.Print()).
hGroupUncertainty template histograms.
saveLocationPath to folder to save histograms. projection (str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. projectionArgs (tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). fileType (str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()).
@@ -682,6 +662,49 @@

+

◆ FilterColumnNames()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Analyzer.analyzer.FilterColumnNames ( self,
 columns,
 node = None 
)
+
+ +

Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node.

+
Parameters
+ + +
columnsList of column names (str) node (Node, optional): Node to compare against. Defaults to BaseNode.
+
+
+
Returns
[str]: List of column names that union with those in the RDataFrame.
+
@@ -701,7 +724,9 @@

Get the active node.

-
Returns
Value of ActiveNode (Node)
+
Returns
+
+Node Value of ActiveNode.
@@ -722,7 +747,9 @@

Get the base node.

-
Returns
Value of BaseNode (Node)
+
Returns
+
+Node Value of BaseNode.
@@ -743,7 +770,7 @@

Get names of all corrections being tracked.

-
Returns
List of Correction keys/names
+
Returns
[str]: List of Correction keys/names.
@@ -764,7 +791,9 @@

Get input file name.

-
Returns
File name
+
Returns
+
+str File name
@@ -794,7 +823,7 @@

-

Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols)

+

Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols)

Parameters
@@ -833,7 +862,7 @@

-

Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR string (ConcatCols)

+

Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string (ConcatCols)

Parameters

flagListList of flag names
@@ -887,13 +916,15 @@

MakeWeightCols().

Parameters

trigListList of trigger names
- - - + + +
templateHistAn TH1, TH2, or TH3 used as a template to create the histograms.
variablesA list of the columns/variables to plot (["x","y","z"]).
nodeNode to plot histograms from. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
templateHistA TH1, TH2, or TH3 used as a template to create the histograms.
variablesA list of the columns/variables to plot (ex. ["x","y","z"]).
nodeNode to plot histograms from. Defaults to ActiveNode.
-
Returns
HistGroup object which stores the uncertainty template histograms.
+
Returns
+
+HistGroup Uncertainty template histograms.
@@ -947,7 +978,9 @@

Returns
New active Node.
+
Returns
+
+Node New ActiveNode.
@@ -983,15 +1016,18 @@

-

Print a PDF image of the node structure of the analysis.

-

Requires python graphviz package (pip install graphviz)

+

Create an N-1 tree structure of nodes building off of node with the N cuts from cutgroup.

+

The structure is optimized so that as many actions are shared as possible so that the N different nodes can be made. Use PrintNodeTree() to visualize.

Parameters
- + +
cutgroupCutGroup that you'd like to scan.
nodeNode to build on.
cutgroupGroup of N cuts to apply.
-
Returns
Dictionary with the final nodes
+
Returns
+
+dict N nodes in dictionary with keys indicating the cut that was not applied.
@@ -1028,10 +1064,10 @@

Print a PDF image of the node structure of the analysis.

-

Requires python graphviz package (pip install graphviz)

+

Requires python graphviz package which should be an installed dependency.

Parameters
- +
outfilenameName of output PDF file.
outfilenameName of output PDF file. verbose (bool, optional): Turns on verbose node labels. Defaults to False.
@@ -1070,11 +1106,72 @@

Parameters
- + +
nodeNode to set as ActiveNode
nodeNode to set as ActiveNode.
+
+ +
Exceptions
+ +
ValueErrorIf argument type is not Node.
-
Returns
New #ActiveNode
+
Returns
+
+Node New ActiveNode.
+ + + + +

◆ Snapshot()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Analyzer.analyzer.Snapshot ( self,
 columns,
 outfilename,
 treename,
 lazy = False,
 openOption = 'RECREATE' 
)
+
+
See also
Node::Snapshot
@@ -1105,13 +1202,20 @@

Add a node to track.

-

Will add the node to #DataFrames dictionary with key node.name. Will raise ValueError if attempting to overwrite an already tracked Node.

+

Will add the node to #DataFrames dictionary with key node.name.

Parameters
nodeNode to start tracking.
+
Exceptions
+ + + +
NameErrorIf attempting to track nodes of the same name.
TypeErrorIf argument type is not Node.
+
+
Returns
None
@@ -1149,7 +1253,7 @@

Node.

-

Initial Node - no modifications

+

Initial Node - no modifications.

@@ -1166,7 +1270,7 @@

dict

-

All corrections added to track

+

All corrections added to track.

@@ -1183,7 +1287,7 @@

int

-

Number of generated events in imported simulation files. Zero if data.

+

Number of generated events in imported simulation files. Zero if not found or data.

@@ -1200,7 +1304,24 @@

bool

-

Is data (true) or simulation (false) based on existence of _genEventCount branch

+

Is data (true) or simulation (false) based on existence of _genEventCount branch.

+ + + + +

◆ lhaid

+ +
+
+ + + + +
TIMBER.Analyzer.analyzer.lhaid
+
+ +

int

+

LHA ID of the PDF weight set in the NanoAOD. -1 if not found or data.

@@ -1217,7 +1338,7 @@

bool

-

Is pre-NanoAODv6 (true) or not (false) based on existence of _genEventCount branch

+

Is pre-NanoAODv6 (true) or not (false) based on existence of _genEventCount branch.

diff --git a/docs/classtest___analyzer_1_1_test_analyzer-members.html b/docs/classtest___analyzer_1_1_test_analyzer-members.html new file mode 100644 index 0000000..9005412 --- /dev/null +++ b/docs/classtest___analyzer_1_1_test_analyzer-members.html @@ -0,0 +1,96 @@ + + + + + + + +TIMBER: Member List + + + + + + + + + + + +
+
+
test_Analyzer.TestAnalyzer Member List
+
+
+ +

This is the complete list of members for test_Analyzer.TestAnalyzer, including all inherited members.

+ + + + + + + + + + + + + + +
a (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
setup(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_AddCorrection(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_DrawTemplates(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_genEventCount_None(self)test_Analyzer.TestAnalyzer
test_GetTrackedNodeNames(self)test_Analyzer.TestAnalyzer
test_lhaid_None(self)test_Analyzer.TestAnalyzer
test_makehist(self)test_Analyzer.TestAnalyzer
test_MakeTemplateHistos(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_MakeWeightCols(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_Nminus1(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_PrintNodeTree(self) (defined in test_Analyzer.TestAnalyzer)test_Analyzer.TestAnalyzer
test_snapshot(self, tmp_path)test_Analyzer.TestAnalyzer
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/classtest___analyzer_1_1_test_analyzer.html b/docs/classtest___analyzer_1_1_test_analyzer.html new file mode 100644 index 0000000..d8bc64c --- /dev/null +++ b/docs/classtest___analyzer_1_1_test_analyzer.html @@ -0,0 +1,138 @@ + + + + + + + +TIMBER: test_Analyzer.TestAnalyzer Class Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+Public Member Functions | +Public Attributes | +List of all members
+
+
test_Analyzer.TestAnalyzer Class Reference
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+Public Member Functions

+def setup (self)
 
+def test_genEventCount_None (self)
 Test genEventCount is assigned 0 when branch doesn't exist in test file.
 
+def test_lhaid_None (self)
 Test lhaid is assigned 0 when branch doesn't exist in test file.
 
+def test_GetTrackedNodeNames (self)
 Test GetTrackNodeNames method after adding a node.
 
+def test_makehist (self)
 Makes a simple histogram of the defined variable.
 
+def test_snapshot (self, tmp_path)
 Makes a simple snapshot.
 
+def test_AddCorrection (self)
 
+def test_MakeWeightCols (self)
 
+def test_MakeTemplateHistos (self)
 
+def test_DrawTemplates (self)
 
+def test_Nminus1 (self)
 
+def test_PrintNodeTree (self)
 
+ + + +

+Public Attributes

+ a
 
+
The documentation for this class was generated from the following file:
    +
  • test/test_Analyzer.py
    • +
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/classtest___common_1_1_common_test-members.html b/docs/classtest___common_1_1_common_test-members.html new file mode 100644 index 0000000..e8491d2 --- /dev/null +++ b/docs/classtest___common_1_1_common_test-members.html @@ -0,0 +1,89 @@ + + + + + + + +TIMBER: Member List + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+
test_Common.CommonTest Member List
+
+
+ +

This is the complete list of members for test_Common.CommonTest, including all inherited members.

+ + + + + + + +
a (defined in test_Common.CommonTest)test_Common.CommonTest
setup(self) (defined in test_Common.CommonTest)test_Common.CommonTest
test_CutflowHist(self) (defined in test_Common.CommonTest)test_Common.CommonTest
test_CutflowTxt(self) (defined in test_Common.CommonTest)test_Common.CommonTest
test_GetHistBinningTuple(self) (defined in test_Common.CommonTest)test_Common.CommonTest
test_openJSON(self) (defined in test_Common.CommonTest)test_Common.CommonTest
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/classtest___common_1_1_common_test.html b/docs/classtest___common_1_1_common_test.html new file mode 100644 index 0000000..eaa61a1 --- /dev/null +++ b/docs/classtest___common_1_1_common_test.html @@ -0,0 +1,112 @@ + + + + + + + +TIMBER: test_Common.CommonTest Class Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+Public Member Functions | +Public Attributes | +List of all members
+
+
test_Common.CommonTest Class Reference
+
+
+ + + + + + + + + + + + +

+Public Member Functions

+def setup (self)
 
+def test_CutflowHist (self)
 
+def test_CutflowTxt (self)
 
+def test_openJSON (self)
 
+def test_GetHistBinningTuple (self)
 
+ + + +

+Public Attributes

+ a
 
+
The documentation for this class was generated from the following file:
    +
  • test/test_Common.py
    • +
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/dir_13e138d54eb8818da29c3992edef070a.html b/docs/dir_13e138d54eb8818da29c3992edef070a.html new file mode 100644 index 0000000..4bdec86 --- /dev/null +++ b/docs/dir_13e138d54eb8818da29c3992edef070a.html @@ -0,0 +1,80 @@ + + + + + + + +TIMBER: test Directory Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+
test Directory Reference
+
+
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/hierarchy.html b/docs/hierarchy.html index 6306c8e..c2e4060 100644 --- a/docs/hierarchy.html +++ b/docs/hierarchy.html @@ -69,24 +69,18 @@

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 123]
- - - - - - - - - - - - - - - - - - + + + + + + + + + + + +
 CBTagCalibration
 CBTagCalibrationReader
 CBTagCalibrationReader::BTagCalibrationReaderImpl
 CBTagEntry
 CCollection
 CJetRecalibrator
 ▼Cobject
 CTIMBER.Analyzer.analyzerMain class for TIMBER
 CTIMBER.Analyzer.CorrectionCorrection class to handle corrections produced by C++ modules
 ▼CTIMBER.Analyzer.GroupOrganizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items
 CTIMBER.Analyzer.CutGroupStores Cut actions
 CTIMBER.Analyzer.HistGroupStores histograms with dedicated function to use TH1/2/3 methods in a batch
 CTIMBER.Analyzer.VarGroupStores Define actions
 CTIMBER.Analyzer.NodeClass to represent nodes in the DataFrame processing graph
 CBTagEntry::Parameters
 CPDFweight_uncert
 CSJBtag_SF
 CBTagCalibrationReader::BTagCalibrationReaderImpl::TmpEntry
 CCollection
 CJetRecalibrator
 ▼Cobject
 CTIMBER.Analyzer.analyzerMain class for TIMBER
 CTIMBER.Analyzer.CorrectionCorrection class to handle corrections produced by C++ modules
 ▼CTIMBER.Analyzer.GroupOrganizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items
 CTIMBER.Analyzer.CutGroupStores Cut actions
 CTIMBER.Analyzer.HistGroupStores histograms with dedicated function to use TH1/2/3 methods in a batch
 CTIMBER.Analyzer.VarGroupStores Define actions
 CTIMBER.Analyzer.NodeClass to represent nodes in the DataFrame processing graph
 CPDFweight_uncert
 CSJBtag_SF
diff --git a/docs/index.html b/docs/index.html index 3741f43..7883e13 100644 --- a/docs/index.html +++ b/docs/index.html @@ -68,7 +68,7 @@

Full Documentation

TIMBER (Tree Interface for Making Binned Events with RDataFrame) is an easy-to-use and fast python analysis framework used to quickly process CMS data sets. Default arguments assume the use of the NanoAOD format but any ROOT TTree can be processed.

Quick install

-

Python 3 is recommended since 2.7 is now no longer supported. Remember to make sure your ROOT version has been built with Python 3 compatibility. For information on how to do this, see this explanation. Working in a virtual environment is also recommended. Below are the commands for using virtualenv but you're obviously free to use your favorite tool for the job (you can install virtualenv for Python 3 with pip3 install virtualenv).

+

Python 3 is recommended since Python 2.7 reached end-of-life on January 1st, 2020. Remember to make sure your ROOT version has been built with Python 3 compatibility. For information on how to do this, see this explanation. Working in a virtual environment is also recommended. Below are the commands for using virtualenv but you're obviously free to use your favorite tool for the job (you can install virtualenv for Python 3 with pip install virtualenv (pip3 for Python 3)).

python -m virtualenv timber-env
source timber-env/bin/activate
git clone https://github.com/lcorcodilos/TIMBER.git
cd TIMBER
source setup.sh

The RDataFrame Backbone

TIMBER's speed comes from the use of ROOT's RDataFrame. RDataFrame offers "multi-threading and other low-level optimisations" which make analysis level processing faster and more efficient than traditional python for loops. However, RDataFrame derives its speed from its C++ back-end and while an RDataFrame object can be instantiated and manipulated in python, any actions on it are written in C++ (even if you're using python).

No more for loops

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diff --git a/docs/search/functions_3.js b/docs/search/functions_3.js index 6c112c4..63d534d 100644 --- a/docs/search/functions_3.js +++ b/docs/search/functions_3.js @@ -1,8 +1,8 @@ var searchData= [ ['dataframe',['DataFrame',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a9b00f027d9ec37783cc205aa0f07571b',1,'TIMBER::Analyzer::analyzer']]], - ['define',['Define',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a251688bc76aeb379a585e7b5673379ee',1,'TIMBER::Analyzer::analyzer']]], - ['discriminate',['Discriminate',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a12b874271650d09b8b510b1d57373efc',1,'TIMBER::Analyzer::analyzer']]], + ['define',['Define',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a017dfcb2da1faeef8feabc8ebfbecf7b',1,'TIMBER.Analyzer.analyzer.Define()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#ae25389bb4e48f195dd0d5d884789e8c2',1,'TIMBER.Analyzer.Node.Define()']]], + ['discriminate',['Discriminate',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a12b874271650d09b8b510b1d57373efc',1,'TIMBER.Analyzer.analyzer.Discriminate()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a8a369da6210e52e7b48e87d6b41cece4',1,'TIMBER.Analyzer.Node.Discriminate()']]], ['do',['Do',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#afdfdf7eadcc26c8803befdf0584e1c90',1,'TIMBER::Analyzer::HistGroup']]], ['drawtemplates',['DrawTemplates',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a9734e5d20b9578669f600985e9af01c1',1,'TIMBER::Analyzer::analyzer']]], ['drop',['Drop',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#acdcc7d9e5031d2ed2e7ad2ecaca8871c',1,'TIMBER::Analyzer::Group']]] diff --git a/docs/search/functions_a.js b/docs/search/functions_a.js index 3a96fff..e3fcd95 100644 --- a/docs/search/functions_a.js +++ b/docs/search/functions_a.js @@ -1,4 +1,7 @@ var searchData= [ - ['setactivenode',['SetActiveNode',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a1ba91dc70df09acca1e2c794dc4b4798',1,'TIMBER::Analyzer::analyzer']]] + ['setactivenode',['SetActiveNode',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a1ba91dc70df09acca1e2c794dc4b4798',1,'TIMBER::Analyzer::analyzer']]], + ['setchild',['SetChild',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a83397bf544614fee1d286e2e45d0b69b',1,'TIMBER::Analyzer::Node']]], + ['setchildren',['SetChildren',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a26e8061e3671d401b18296c971a59628',1,'TIMBER::Analyzer::Node']]], + ['snapshot',['Snapshot',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a9845bb3d0b4fb767f36f9b9243e690c1',1,'TIMBER.Analyzer.analyzer.Snapshot()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a37bb5c2ae220f555e7253bf8f2f5ace3',1,'TIMBER.Analyzer.Node.Snapshot()']]] ]; diff --git a/docs/search/searchdata.js b/docs/search/searchdata.js index a37d510..fecdc8b 100644 --- a/docs/search/searchdata.js +++ b/docs/search/searchdata.js @@ -1,9 +1,9 @@ var indexSectionsWithContent = { 0: "_abcdfghijklmnpstv", - 1: "abcghjnpstv", + 1: "acghjnpsv", 2: "_acdfgkmnpstv", - 3: "abcginpt", + 3: "abcgilnpt", 4: "dfglpt" }; diff --git a/docs/search/variables_5.js b/docs/search/variables_5.js index 9cd3085..6ac0d1c 100644 --- a/docs/search/variables_5.js +++ b/docs/search/variables_5.js @@ -1,4 +1,4 @@ var searchData= [ - ['name',['name',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#aacb9171e34799a5b9e86f5f687230ef2',1,'TIMBER.Analyzer.Group.name()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html#a14c46c4d02dec27db914b3b567737b09',1,'TIMBER.Analyzer.Correction.name()']]] + ['lhaid',['lhaid',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a06c0c43d14f4560e8f0fedb5dfe0164d',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_6.js b/docs/search/variables_6.js index 8238c2e..9cd3085 100644 --- a/docs/search/variables_6.js +++ b/docs/search/variables_6.js @@ -1,4 +1,4 @@ var searchData= [ - ['prev6',['preV6',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a123d460f5eb6b71957244a4fe5762f4e',1,'TIMBER::Analyzer::analyzer']]] + ['name',['name',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#aacb9171e34799a5b9e86f5f687230ef2',1,'TIMBER.Analyzer.Group.name()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html#a14c46c4d02dec27db914b3b567737b09',1,'TIMBER.Analyzer.Correction.name()']]] ]; diff --git a/docs/search/variables_7.js b/docs/search/variables_7.js index fd1e3e6..8238c2e 100644 --- a/docs/search/variables_7.js +++ b/docs/search/variables_7.js @@ -1,4 +1,4 @@ var searchData= [ - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] + ['prev6',['preV6',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a123d460f5eb6b71957244a4fe5762f4e',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_8.js b/docs/search/variables_8.js index f156c8c..fd1e3e6 100644 --- a/docs/search/variables_8.js +++ b/docs/search/variables_8.js @@ -1,5 +1,4 @@ var searchData= [ - ['status',['status',['../class_particle.html#a0d1b142fbf987135e122831a612e4f19',1,'Particle']]], - ['statusflags',['statusFlags',['../class_particle.html#a945ca48319baa2d06f508afd3f49bc15',1,'Particle']]] + ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] ]; diff --git a/doxysetup/Doxyfile b/doxysetup/Doxyfile index f4a932e..245552c 100644 --- a/doxysetup/Doxyfile +++ b/doxysetup/Doxyfile @@ -875,6 +875,8 @@ RECURSIVE = YES EXCLUDE = build/ EXCLUDE += experimental/ +EXCLUDE += test/ +EXCLUDE += TIMBER/Framework/ExternalTools/ # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or # directories that are symbolic links (a Unix file system feature) are excluded From 0eb30e1b6c0f03b9bc05ab11a7cc45bad9b90801 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 10:33:39 -0400 Subject: [PATCH 05/17] Fix LHA ID lookup for empty branch title --- TIMBER/Analyzer.py | 21 +++++++++++---------- 1 file changed, 11 insertions(+), 10 deletions(-) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index 8661896..6260ee0 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -133,16 +133,17 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): pdfbranch = self.__eventsChain.GetBranch("LHEPdfWeight") if pdfbranch != None: branch_title = pdfbranch.GetTitle() - self.lhaid = '' - for c in branch_title: - if c.isdigit(): - self.lhaid+=str(c) - elif self.lhaid == '': - continue - else: - break - self.lhaid = str(int(self.lhaid)-1) - print ('LHA ID: '+self.lhaid) + if branch_title != '': + self.lhaid = '' + for c in branch_title: + if c.isdigit(): + self.lhaid+=str(c) + elif self.lhaid == '': + continue + else: + break + self.lhaid = str(int(self.lhaid)-1) + print ('LHA ID: '+self.lhaid) # Cleanup del RunChain From 272fda23bf7b1eb1a78f30e48a15a98dd1a3d015 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 15:18:03 -0400 Subject: [PATCH 06/17] Update Analyzer docs part2 --- TIMBER/Analyzer.py | 333 ++++++++++++++++++++++++++++----------------- 1 file changed, 210 insertions(+), 123 deletions(-) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index 6260ee0..6f1a4ba 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -4,15 +4,16 @@ """ -import ROOT -import pprint, time, json, copy, os, sys, subprocess -from collections import OrderedDict -pp = pprint.PrettyPrinter(indent=4) from TIMBER.Tools.Common import GetHistBinningTuple, CompileCpp from clang import cindex +from collections import OrderedDict + +import ROOT +import pprint, copy, os, subprocess +pp = pprint.PrettyPrinter(indent=4) + # For parsing c++ modules -from clang import cindex libs = subprocess.Popen('$ROOTSYS/bin/root-config --libs',shell=True, stdout=subprocess.PIPE).communicate()[0].strip() rootpath = subprocess.Popen('echo $ROOTSYS',shell=True, stdout=subprocess.PIPE).communicate()[0].strip() cpp_args = '-x c++ -c --std=c++11 -I %s/include %s -lstdc++'%(rootpath,libs) @@ -825,11 +826,13 @@ def SetChild(self,child,overwrite=False): ''' if overwrite: self.children = [] + print ('Current children %s'%self.children) + if isinstance(child,Node): if child.name not in [c.name for c in self.children]: self.children.append(child) else: - raise NameError('Attempting to add child node "%s" but one with this name already exists in node "%s".'%(child.name, self.name)) + raise NameError('Attempting to add child node "%s" but one with this name already exists in node "%s" (%s).'%(child.name, self.name, [c.name for c in self.children])) else: raise TypeError('Child is not an instance of Node class for node %s' %self.name) @@ -847,14 +850,14 @@ def SetChildren(self,children,overwrite=False): if isinstance(children,dict): for c in children.keys(): - if isinstance(child,Node): + if isinstance(c,Node): self.SetChild(children[c]) else: raise TypeError('Child is not an instance of Node class for node %s' %self.name) elif isinstance(children,list): for c in children: - if isinstance(child,node): + if isinstance(c,Node): self.SetChild(c) else: raise TypeError('Child is not an instance of Node class for node %s' %self.name) @@ -952,6 +955,9 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') treename ([type]): Name of the output TTree lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. openOption (str, optional): TFile opening options. Defaults to 'RECREATE'. + + Returns: + None ''' opts = ROOT.RDF.RSnapshotOptions() opts.fLazy = lazy @@ -975,14 +981,14 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') # Group class and subclasses # ############################## class Group(object): - """Organizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items.""" + '''Organizes objects in OrderedDict with basic functionality to add and + drop items, add Groups together, get keys, and access items.''' def __init__(self, name): - """Constructor + '''Constructor Args: - name: Name (string) for instance. - """ - + name (str): Name for instance. + ''' ## @var name # str # @@ -1000,124 +1006,138 @@ def __init__(self, name): self.items = OrderedDict() self.type = None - def Add(self,name,item): - """Add item to Group with a name. + def Add(self,name,item,copy=False): + '''Add item to Group with a name. Modifies in-place. Args: - name (str): Name/key (string) for added item. + name (str): Name/key for added item. item (obj): Item to add. Returns: None - """ + ''' self.items[name] = item - def Drop(self,name): - """Drop item from Group with provided name/key. + def Drop(self,name,copy=False): + '''Drop item from Group with provided name/key. Modifies in-place. Args: - name (str): Name/key (string) for dropped item. + name (str): Name/key for dropped item. Returns: - New group with item dropped. - """ - dropped = copy.deepcopy(self.items) - del dropped[name] - if self.type == None: newGroup = Group(self.name+'-'+name) - elif self.type == 'var': newGroup = VarGroup(self.name+'-'+name) - elif self.type == 'cut': newGroup = CutGroup(self.name+'-'+name) - newGroup.items = dropped + None + ''' + del self.items[name] + + def Clone(self,name): + '''Clone the current group with a new name. + + Args: + name (str): Name for clone. + + Returns: + Group: Group clone (will be VarGroup, CutGroup, or HistGroup if applicable). + ''' + newGroup = copy.deepcopy(self.items) + if self.type == None: newGroup = Group(name) + elif self.type == 'var': newGroup = VarGroup(name) + elif self.type == 'cut': newGroup = CutGroup(name) + elif self.type == 'hist': newGroup = HistGroup(name) return newGroup def __add__(self,other): - """Adds two Groups together. + '''Adds two Groups together. Items in `other` override duplicates. + If groups do not have matching #type, a generic Group will be returned. + Ex. `newgroup = group1 + group2` Args: - other (Group): Group to add to current Group. + other (Group): Group to add to current Group. Returns: - Addition of the two groups. - """ + Group: Addition of the two groups (will be VarGroup, CutGroup, or HistGroup if applicable). + ''' added = copy.deepcopy(self.items) added.update(other.items) if self.type == 'var' and other.type == 'var': newGroup = VarGroup(self.name+"+"+other.name) elif self.type == 'cut' and other.type == 'cut': newGroup = CutGroup(self.name+"+"+other.name) + elif self.type == 'hist' and other.type == 'hist': newGroup = HistGroup(self.name+"+"+other.name) else: newGroup = Group(self.name+"+"+other.name) newGroup.items = added return newGroup def keys(self): - """Gets list of keys from Group. + '''Gets list of keys from Group. + Returns: - Names/keys from Group. - """ + list: Names/keys from Group. + ''' return self.items.keys() def values(self): - """Gets list of values from Group. + '''Gets list of values from Group. + Returns: - Values from Group. - """ + list: Values from Group. + ''' return self.items.values() def __setitem__(self, key, value): + '''Set key-value pair as you would with dictionary. + Ex. `mygroup["item_name"] = new_value` + + Args: + key (obj): Key for value. + value (obj): Value to store. + ''' self.items[key] = value def __getitem__(self,key): - """ + '''Get value from key as you would with dictionary. + Ex. `val = mygroup["item_name"]` + Args: - key: Key for name/key in Group. + key (obj): Key for name/key in Group. Returns: - Item for given key. - """ + obj: Item for given key. + ''' return self.items[key] # Subclass for cuts class CutGroup(Group): - """Stores Cut actions""" + '''Stores Cut actions''' def __init__(self, name): - """ + '''Constructor + Args: - name: Name (string) for instance. - """ - ## @var type - # string - # - # Group type - "cut", "var", "hist" + name (str): Name for instance. + ''' super(CutGroup,self).__init__(name) self.type = 'cut' # Subclass for vars/columns class VarGroup(Group): - """Stores Define actions""" + '''Stores Define actions''' def __init__(self, name): - """ + '''Constructor + Args: - name: Name (string) for instance. - """ - ## @var type - # string - # - # Group type - "cut", "var", "hist" + name (str): Name for instance. + ''' super(VarGroup,self).__init__(name) self.type = 'var' # Subclass for histograms class HistGroup(Group): - """Stores histograms with dedicated function to use TH1/2/3 methods in a batch""" + '''Stores histograms with dedicated function to use TH1/2/3 methods in a batch''' def __init__(self, name): - """ + '''Constructor + Args: - name: Name (string) for instance. - """ - ## @var type - # string - # - # Group type - "cut", "var", "hist" + name (str): Name for instance. + ''' super(HistGroup,self).__init__(name) self.type = 'hist' - # - THmethod is a string and argsTuple is a tuple of arguments to pass the THmethod def Do(self,THmethod,argsTuple=()): '''Batch act on histograms using ROOT TH1/2/3 methods. @@ -1125,7 +1145,7 @@ def Do(self,THmethod,argsTuple=()): THmethod (str): String of the ROOT TH1/2/3 method to use. argsTuple (tuple): Tuple of arguments to pass to THmethod. Returns: - New HistGroup with THmethod applied if THmethod does not return None. Else None. + HistGroup or None: New HistGroup with THmethod applied if THmethod does not return None; else None. Example: To scale all histograms by 0.5 myHistGroup.Do("Scale",(0.5)) @@ -1147,12 +1167,11 @@ def Do(self,THmethod,argsTuple=()): if returnNone: del newGroup else: return newGroup - #################### # Correction class # #################### class Correction(object): - """Correction class to handle corrections produced by C++ modules. + '''Correction class to handle corrections produced by C++ modules. Uses clang in python to parse the C++ code and determine function names, namespaces, and argument names and types. @@ -1165,22 +1184,24 @@ class Correction(object): (2) the return must be a vector ordered as for "weight" type and for "uncert" type. - """ - def __init__(self,name,script,constructor=[],mainFunc='eval',corrtype=None,columnList=None,isClone=False,existingObject=None): - """Constructor + ''' + def __init__(self,name,script,constructor=[],mainFunc='eval',corrtype='',columnList=None,isClone=False): + '''Constructor Args: name (str): Correction name. script (str): Path to C++ script with function to calculate correction. - constructor ([str]): Arguments to script class constructor. - mainFunc (str): Name of the function to use inside script. Defaults to None + constructor ([str], optional): List of arguments to script class constructor. Defaults to []. + mainFunc (str, optional): Name of the function to use inside script. Defaults to None and the class will try to deduce it. - corrtype (str): "weight" (nominal weight to apply with an uncertainty) or - "uncert" (only an uncertainty). Defaults to None and the class will try to + corrtype (str, optional): Either "weight" (nominal weight to apply with an uncertainty) or + "uncert" (only an uncertainty). Defaults to '' and the class will try to deduce it. - isClone (bool): For internal use when cloning. Defaults to False. - - """ + columnList ([str], optional): List of column names to search mainFunc arguments against. + Defaults to None and the standard NanoAOD columns from #LoadColumnNames() will be used. + isClone (bool, optional): For internal use when cloning. Defaults to False. If True, will + not duplicately recompile the same script if two functions are needed in one C++ script. + ''' ## @var name # str @@ -1193,53 +1214,73 @@ def __init__(self,name,script,constructor=[],mainFunc='eval',corrtype=None,colum self.__mainFunc = self.__funcInfo.keys()[0] self.__columnNames = LoadColumnNames() if columnList == None else columnList self.__constructor = constructor - self.__objectName = self.name if existingObject == None else existingObject + self.__objectName = self.name self.__call = None # self.__funcNames = self.__funcInfo.keys() - if not isClone or existingObject == None: + if not isClone: if self.__mainFunc not in self.__funcInfo.keys(): - raise ValueError('Correction() instance provided with mainFunc argument that does not exist in %s'%self.__script) + raise ValueError('Correction() instance provided with mainFunc argument does not exist in %s'%self.__script) CompileCpp(self.__script,library=True) - - if existingObject == None: + else: self.__instantiate(constructor) - - - def Clone(self,name,newMainFunc=None,cpObj=False): - """Makes a clone of current instance. + def Clone(self,name,newMainFunc=None): + '''Makes a clone of current instance. If multiple functions are in the same script, one can clone the correction and reassign the mainFunc to avoid compiling the same script twice. Args: name (str): Clone name. - newMainFunc (str): Name of the function to use inside script. Defaults to same as original. + newMainFunc (str, optional): Name of the function to use inside script. Defaults to None and the original is used. Returns: - Clone of instance with same script but different function (newMainFunc) - """ + Correction: Clone of instance with same script but different function (newMainFunc). + ''' if newMainFunc == None: newMainFunc = self.__mainFunc.split('::')[-1] + return Correction(name,self.__script,self.__constructor,newMainFunc,corrtype=self.__type,isClone=True,columnList=self.__columnNames) - useObj = None if not cpObj else self.name + def __getScript(self,script): + '''Does a basic check that script file exists and modifies path if necessary + so relative paths to TIMBER/Framework/ can be used. - return Correction(name,self.__script,self.__constructor,newMainFunc,corrtype=self.__type,isClone=True,columnList=self.__columnNames,existingObject=useObj) + Args: + script (str): Name of script (must exist on system PATH). - def __getScript(self,script): - if ('TIMBER/Framework' not in script) or (TIMBERPATH in script): + Raises: + NameError: If file does not exist. + + Returns: + str: File name. + ''' + if TIMBERPATH in script: # global path given to TIMBER module outname = script - else: + elif 'TIMBER/Framework' in script: # relative path given to TIMBER module outname = TIMBERPATH+script + else: # non-TIMBER module + outname = script - if not os.path.isfile(outname): - raise NameError('File %s does not exist'%outname) - return outname + if not os.path.isfile(script): + raise NameError('File %s does not exist'%script) + return script - def __setType(self,in_type): + def __setType(self,inType): + '''Sets the type of correction. + Will attempt to deduce from input script name if inType=''. File name + must have suffic '_weight' or '_SF' for weight type (correction plus uncertainties) + or '_uncert' for 'uncert' type (only uncertainties). + + Args: + inType (str): Type of Correction. Use '' to deduce from input script name. + + Raises: + NameError: If inType is '' and the type cannot be deduced from the input + script name. + ''' out_type = None - if in_type in ['weight','uncert']: - out_type = in_type - elif in_type not in ['weight','uncert'] and in_type != None: + if inType in ['weight','uncert']: + out_type = inType + elif inType not in ['weight','uncert'] and inType != None: print ('WARNING: Correction type %s is not accepted. Only "weight" or "uncert". Will attempt to resolve...') if out_type == None: @@ -1248,11 +1289,19 @@ def __setType(self,in_type): elif '_uncert.cc' in self.__script.lower(): out_type = 'uncert' else: - raise ValueError('Attempting to add correction "%s" but script name (%s) does not end in "_weight.cc", "_SF.cc" or "_uncert.cc" and so the type of correction cannot be determined.'%(self.name,self.__script)) + raise NameError('Attempting to add correction "%s" but script name (%s) does not end in "_weight.cc", "_SF.cc" or "_uncert.cc" and so the type of correction cannot be determined.'%(self.name,self.__script)) self.__type = out_type def __getFuncInfo(self,funcname): + '''Parses script with clang to get the function information including name, namespace, and argument names. + + Args: + funcname (str): C++ class method name to search for in script. + + Returns: + OrderedDict: Dictionary organized as `myreturn[methodname][argname] = argtype`. + ''' cpp_idx = cindex.Index.create() translation_unit = cpp_idx.parse(self.__script, args=cpp_args) filename = translation_unit.cursor.spelling @@ -1292,6 +1341,12 @@ def __getFuncInfo(self,funcname): return funcs def __instantiate(self,args): + '''Instantiates the class in the provided script with the provided arguments. + + Args: + args ([str]): Ordered list of arguments to provide to C++ class to instantiate + the object in memory. + ''' classname = self.__mainFunc.split('::')[-2] # constructor_name = classname+'::'+classname @@ -1303,21 +1358,32 @@ def __instantiate(self,args): print ('Instantiating...') ROOT.gInterpreter.Declare(line) - def MakeCall(self,inArgs): - """Return the call to the function with the branch/column names deduced or added from input. + def MakeCall(self,inArgs = []): + '''Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input. - Returns: - inArgs ([str]): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. - String of call to function from C++ script. + Args: + inArgs (list, optional): [description]. Defaults to []. + + Raises: + NameError: If argument written in C++ script cannot be found in available columns. + ValueError: If provided number of arguments does not match the number in the method. + ''' """ + Args: + inArgs ([str], optional): List of arguments (branch/column names) to provide to per-event evaluation method. + Defaults to [] in which case the arguements are deduced from what is written in the C++ script. + + Returns + str: Call to function from C++ script. + """ args_to_use = [] if len(inArgs) == 0: print ('Determining arguments for correction %s automatically'%self.name) for a in self.__funcInfo[self.__mainFunc].keys(): if a not in self.__columnNames: - raise ValueError('Not able to find arg %s written in %s in available columns'%(a,self.__script)) + raise NameError('Not able to find arg %s written in %s in available columns'%(a,self.__script)) else: args_to_use.append(a) @@ -1334,7 +1400,19 @@ def MakeCall(self,inArgs): self.__call = out - def GetCall(self): + def GetCall(self,inArgs = []): + '''Gets the call to the method to be evaluated per-event. + + Args: + inArgs (list, optional): Args to use for eval if #MakeCall() has not already been called. Defaults to []. + If #MakeCall() has not already been called and inArgs == [], then the arguments to the method will + be deduced from the C++ method definition argument names. + + Returns: + str: The string that calls the method to evaluate per-event. Pass to Analyzer.Define(), Analyzer.Cut(), etc. + ''' + if self.__call == None: + self.MakeCall(self, inArgs) return self.__call # def SetMainFunc(self,funcname): @@ -1361,28 +1439,37 @@ def GetCall(self): # return self def GetMainFunc(self): - """Gets full main function name. + '''Gets full main function name. Returns: - Name of function assigned from C++ script. - """ + str: Name of function assigned from C++ script. + ''' return self.__mainFunc def GetType(self): - """Gets Correction type. + '''Gets Correction type. Returns: - Correction type. - """ + str: Correction type. + ''' return self.__type def GetFuncNames(self): - """Gets list of function names in C++ script. + '''Gets list of function names in C++ script. Returns: - List of possible function names. - """ + [str]: List of possible function names found in C++ script. + ''' return self.__funcInfo.keys() -def LoadColumnNames(source=None): - if source == None: +def LoadColumnNames(source=''): + '''Loads column names from a text file. + + Args: + source (str, optional): File location if default TIMBER/data/NanoAODv6_cols.txt + is not to be used. Defaults to ''. + + Returns: + [str]: List of all column names. + ''' + if source == '': file = TIMBERPATH+'TIMBER/data/NanoAODv6_cols.txt' else: file = source From ff0174ae956258e520eaf48ae88f7fb5ed857e15 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 15:18:29 -0400 Subject: [PATCH 07/17] Fix test setup methods --- test/test_Analyzer.py | 13 +++++++------ test/test_Common.py | 5 +++-- 2 files changed, 10 insertions(+), 8 deletions(-) diff --git a/test/test_Analyzer.py b/test/test_Analyzer.py index 1f43dd3..841f916 100644 --- a/test/test_Analyzer.py +++ b/test/test_Analyzer.py @@ -4,14 +4,15 @@ from TIMBER.Tools.Common import CompileCpp class TestAnalyzer(): - def setup(self): + @classmethod + def setup_class(cls): CompileCpp('TIMBER/Framework/include/common.h') # Compile (via gInterpreter) commonly used c++ code CompileCpp('examples/example.cc') - self.a = analyzer('examples/GluGluToHToTauTau.root') - self.a.Cut("test_cut1", "Jet_pt.size() > 0") - self.a.Define('lead_vector', 'analyzer::TLvector(Jet_pt[0],Jet_eta[0],Jet_phi[0],Jet_mass[0])') - self.a.Define('sublead_vector','analyzer::TLvector(Jet_pt[1],Jet_eta[1],Jet_phi[1],Jet_mass[1])') - self.a.Define('invariantMass','analyzer::invariantMass(lead_vector,sublead_vector)') + cls.a = analyzer('examples/GluGluToHToTauTau.root') + cls.a.Cut("test_cut1", "Jet_pt.size() > 0") + cls.a.Define('lead_vector', 'analyzer::TLvector(Jet_pt[0],Jet_eta[0],Jet_phi[0],Jet_mass[0])') + cls.a.Define('sublead_vector','analyzer::TLvector(Jet_pt[1],Jet_eta[1],Jet_phi[1],Jet_mass[1])') + cls.a.Define('invariantMass','analyzer::invariantMass(lead_vector,sublead_vector)') def test_genEventCount_None(self): '''Test genEventCount is assigned 0 when branch doesn't exist in test file''' diff --git a/test/test_Common.py b/test/test_Common.py index 55247b7..f961c61 100644 --- a/test/test_Common.py +++ b/test/test_Common.py @@ -1,8 +1,9 @@ from TIMBER.Tools.Common import * class CommonTest(): - def setup(self): - self.a = analyzer('examples/GluGluToHToTauTau.root') + @classmethod + def setup_class(cls): + cls.a = analyzer('examples/GluGluToHToTauTau.root') def test_CutflowHist(self): pass From 60c13788614801fec38ce32a391cd208f98453bd Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 15:29:34 -0400 Subject: [PATCH 08/17] Update docs for Plot.py --- TIMBER/Tools/Plot.py | 40 ++++++++++------------------------------ 1 file changed, 10 insertions(+), 30 deletions(-) diff --git a/TIMBER/Tools/Plot.py b/TIMBER/Tools/Plot.py index 580c271..5ef8103 100644 --- a/TIMBER/Tools/Plot.py +++ b/TIMBER/Tools/Plot.py @@ -1,48 +1,28 @@ +'''@docstring Plot.py + +Functions to easily plot histograms together in various configurations. + +''' + from TIMBER.Tools.CMS import CMS_lumi import ROOT, collections from collections import OrderedDict from TIMBER.Analyzer import HistGroup -def StitchQCD(QCDdict,normDict=None): - '''Stitches together histograms in QCD hist groups. - - Args: - QCDdict ({string:HistGroup}): Dictionary of HistGroup objects - normDict ([string:float]): Default to None and assume normalization has already been done. - Factors to normalize each sample to where keys must match QCDdict keys. - Returns: - New HistGroup with histograms in group being the final stitched versions - ''' - # Normalize first if needed - if normDict != None: - for k in normDict.keys(): - for hkey in QCDdict[k].keys(): - QCDdict[k][hkey].Scale(normDict[k]) - # Stitch - out = HistGroup("QCD") - for ksample in QCDdict.keys(): - for khist in QCDdict[ksample].keys(): - if khist not in out.keys(): - out[khist] = QCDdict[ksample][khist].Clone() - else: - out[khist].Add(QCDdict[ksample][khist]) - - return out - def CompareShapes(outfilename,year,prettyvarname,bkgs={},signals={},names={},colors={},scale=True,stackBkg=False): '''Create a plot that compares the shapes of backgrounds versus signal. Backgrounds will be stacked together and signals will be plot separately. - Total background and signals are scaled to 1 if scale = True. Inputs organized + Total background and signals are scaled to 1 if scale == True. Inputs organized as dicts so that keys can match across dicts (ex. bkgs and bkgNames). Args: outfilename (string): Path where plot will be saved. prettyvarname (string): What will be assigned to as the axis title. - bkgs ({string:TH1}, optional): . Defaults to {}. - signals ({string:TH1], optional): [description]. Defaults to {}. + bkgs ({string:TH1}, optional): Dictionary of backgrounds to plot. Defaults to {}. + signals ({string:TH1}, optional): Dictionary of signals to plot. Defaults to {}. names ({string:string}, optional): Formatted version of names for backgrounds and signals to appear in legend. Keys must match those in bkgs and signal. Defaults to {}. colors ({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}. - scale (bool, optional): Scales everything to unity if true. Defaults to True. + scale (bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True. ''' # Initialize c = ROOT.TCanvas('c','c',800,700) From 72390b69b1e63fee191df601bff16e358075a3a3 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 16:26:12 -0400 Subject: [PATCH 09/17] Document Common.py and Plot.py --- TIMBER/Tools/Common.py | 495 ++++++++++++++--------------------------- TIMBER/Tools/Plot.py | 329 ++++++++++++++++++++++++++- 2 files changed, 499 insertions(+), 325 deletions(-) diff --git a/TIMBER/Tools/Common.py b/TIMBER/Tools/Common.py index 1b37ba4..aff2bc3 100755 --- a/TIMBER/Tools/Common.py +++ b/TIMBER/Tools/Common.py @@ -12,8 +12,19 @@ ################### # TIMBER specific # ################### -# Draws a cutflow histogram using the report feature of RDF. -def CutflowHist(name,node): +def CutflowHist(name,node,efficiency=False): + '''Draws a cutflow histogram using the report feature of RDF. + + Args: + name (str): Name of output histogram + node (Node): Input Node from which to get the cutflow. + efficiency (bool, optional): Reports an efficiency instead of yields + (relative to number of events before any cuts on Node). + + Returns: + TH1: Histogram with each bin showing yield (or efficiency) for + progressive cuts. + ''' filters = node.DataFrame.GetFilterNames() rdf_report = node.DataFrame.Report() ncuts = len(filters) @@ -21,25 +32,84 @@ def CutflowHist(name,node): for i,filtername in enumerate(filters): cut = rdf_report.At(filtername) h.GetXaxis().SetBinLabel(i+1,filtername) - h.SetBinContent(i+1,cut.GetPass()) + if efficiency: + if i == 0: + base = float(cut.GetPass()) + h.SetBinContent(i+1,cut.GetPass()/base) + else: + h.SetBinContent(i+1,cut.GetPass()) return h -def CutflowTxt(name,node): +def CutflowTxt(name,node,efficiency=False): + '''Writes out the cutflow as a text file using the report feature of RDF. + + Args: + name (str): Name of output text file. + node (Node): Input Node from which to get the cutflow. + efficiency (bool, optional): Reports an efficiency instead of yields + (relative to number of events before any cuts on Node). + + Returns: + None + ''' filters = node.DataFrame.GetFilterNames() rdf_report = node.DataFrame.Report() ncuts = len(filters) out = open(name,'w') for i,filtername in enumerate(filters): cut = rdf_report.At(filtername) - out.write('%s %s'%(filtername,cut.GetPass())) + if efficiency: + if i == 0: + base = float(cut.GetPass()) + out.write('%s %s'%(filtername,cut.GetPass()/base)) + else: + out.write('%s %s'%(filtername,cut.GetPass())) out.close() +def StitchQCD(QCDdict,normDict=None): + '''Stitches together histograms in QCD hist groups. + + Args: + QCDdict ({string:HistGroup}): Dictionary of HistGroup objects + normDict ({string:float}): Factors to normalize each sample to where keys must match QCDdict keys. + Default to None and assume normalization has already been done. + Returns: + HistGroup: New HistGroup with histograms in group being the final stitched versions + ''' + # Normalize first if needed + if normDict != None: + for k in normDict.keys(): + for hkey in QCDdict[k].keys(): + QCDdict[k][hkey].Scale(normDict[k]) + # Stitch + out = HistGroup("QCD") + for ksample in QCDdict.keys(): + for khist in QCDdict[ksample].keys(): + if khist not in out.keys(): + out[khist] = QCDdict[ksample][khist].Clone() + else: + out[khist].Add(QCDdict[ksample][khist]) + + return out ########### # Generic # ########### def CompileCpp(blockcode,library=False): + '''Compiles C++ code via the gInterpreter. + + A python string (the actual code) can be passed or a file name + (the file will be opened and read). If a file is passed, + the C++ code can be compiled + as a library and if in the future the C++ script is older than the library, + then the library will be loaded instead. + + Args: + blockcode (str): Either a block of C++ code or a file name to open. + library (bool, optional): Compiles a library which can be later loaded + to avoid compilation time. Defaults to False. + ''' if os.environ["TIMBERPATH"] not in ROOT.gSystem.GetIncludePath(): ROOT.gInterpreter.AddIncludePath(os.environ["TIMBERPATH"]) @@ -58,25 +128,43 @@ def CompileCpp(blockcode,library=False): lib_path = blockcode.replace('.','_')+'.so' else: lib_path = blockcode - # If library exists and is older than the cc file, just load + loaded = False - if os.path.exists(lib_path): + if os.path.exists(lib_path): # If library exists and is older than the cc file, just load mod_time_lib = os.path.getmtime(lib_path) mod_time_cc = os.path.getmtime(blockcode) if mod_time_lib > mod_time_cc: print ('Loading library...') ROOT.gSystem.Load(lib_path) loaded = True - # Else compile a new lib - if not loaded: + + if not loaded: # Else compile a new lib ROOT.gSystem.AddIncludePath(" -I%s "%os.getcwd()) - print ('Processing library...') + print ('Compiling library...') ROOT.gROOT.ProcessLine(".L "+blockcode+"+") -def openJSON(f): - return json.load(open(f,'r'), object_hook=ascii_encode_dict) +def OpenJSON(filename): + '''Opens JSON file as a dictionary (accounting for unicode encoding) + + Args: + filename (str): JSON file name to open. + + Returns: + dict: Python dictionary with JSON content. + ''' + return json.load(open(f,'r'), object_hook=AsciiEncodeDict) -def ascii_encode_dict(data): +def AsciiEncodeDict(data): + '''Encodes dict to ascii from unicode + + Credit Andrew Clark on [StackOverflow](https://stackoverflow.com/questions/9590382/forcing-python-json-module-to-work-with-ascii/28339920). + + Args: + data (dict): Input dictionary. + + Returns: + dict: New dictionary with unicode converted to ascii. + ''' ascii_encode = lambda x: x.encode('ascii') if isinstance(x, unicode) else x return dict(map(ascii_encode, pair) for pair in data.items()) @@ -119,7 +207,20 @@ def GetHistBinningTuple(h): return xbinning + ybinning + zbinning, dimension -def colliMate(myString,width=18): +def ColliMate(myString,width=18): + '''Collimates strings to have consistent spacing between first character + of word i with the first character of word i+1 and i-1. + + Recommended instead to use format() method of python strings as + described [here](https://stackoverflow.com/questions/10623727/python-spacing-and-aligning-strings). + + Args: + myString (str): String to space (words only separated by single space). + width (int, optional): Column widths. Defaults to 18. + + Returns: + str: String with new spacing between words. + ''' sub_strings = myString.split(' ') new_string = '' for i,sub_string in enumerate(sub_strings): @@ -133,7 +234,15 @@ def colliMate(myString,width=18): new_string += sub_string return new_string -def dictStructureCopy(inDict): +def DictStructureCopy(inDict): + '''Recursively copies the structure of a dictionary with non-dict items replaced with 0. + + Args: + inDict (dict): Dictionary with structure to copy. + + Returns: + dict: Output dict. + ''' newDict = {} for k1,v1 in inDict.items(): if type(v1) == dict: @@ -142,7 +251,15 @@ def dictStructureCopy(inDict): newDict[k1] = 0 return newDict -def dictCopy(inDict): +def DictCopy(inDict): + '''Recursively copy dictionary structure and values. + + Args: + inDict (dict): Dictionary to copy. + + Returns: + dict: Output copy. + ''' newDict = {} for k1,v1 in inDict.items(): if type(v1) == dict: @@ -151,13 +268,30 @@ def dictCopy(inDict): newDict[k1] = v1 return newDict -def executeCmd(cmd,dryrun=False): +def ExecuteCmd(cmd,dryrun=False): + '''Executes shell command via `subprocess.call()` and prints + the command for posterity. + + Args: + cmd (str): Shell command to run. + dryrun (bool, optional): Prints command but doesn't execute it. Defaults to False. + ''' print('Executing: '+cmd) if not dryrun: subprocess.call([cmd],shell=True) -def dictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): - # First set of keys are row, second are column +def DictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): + '''Converts a dictionary with two layers (ie. only one set of sub-keys) to + a LaTeX table. First set of keys (ie. external) are rows, second (ie. internal) are columns. + If the column entry for a given row is not provided (ie. missing key), then '-' is substituted. + + Args: + dict2convert (dict): Input dictionary. + outfilename (str): Output .tex file name. + roworder (list, optional): Custom ordering of rows. Defaults to [] in which case the sorted keys are used. + columnorder (list, optional): Custom ordering of columns. Defaults to [] in which case the sorted keys are used. + ''' + # Determine order of rows and columns if len(roworder) == 0: rows = sorted(dict2convert.keys()) else: @@ -172,18 +306,18 @@ def dictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): columns.sort() else: columns = columnorder - + # Book output latexout = open(outfilename,'w') latexout.write('\\begin{table}[] \n') latexout.write('\\begin{tabular}{|c|'+len(columns)*'c'+'|} \n') latexout.write('\\hline \n') - + # Write first line with column names column_string = ' &' for c in columns: column_string += str(c)+'\t& ' column_string = column_string[:-2]+'\\\\ \n' latexout.write(column_string) - + # Write rows latexout.write('\\hline \n') for r in rows: row_string = '\t'+r+'\t& ' @@ -200,248 +334,15 @@ def dictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): latexout.write('\\end{table}') latexout.close() -def easyPlot(name, tag, histlist, bkglist=[],signals=[],colors=[],titles=[],logy=False,rootfile=False,xtitle='',ytitle='',dataOff=False,datastyle='pe'): - # histlist is just the generic list but if bkglist is specified (non-empty) - # then this function will stack the backgrounds and compare against histlist as if - # it is data. The important bit is that bkglist is a list of lists. The first index - # of bkglist corresponds to the index in histlist (the corresponding data). - # For example you could have: - # histlist = [data1, data2] - # bkglist = [[bkg1_1,bkg2_1],[bkg1_2,bkg2_2]] - - if len(histlist) == 1: - width = 800 - height = 700 - padx = 1 - pady = 1 - elif len(histlist) == 2: - width = 1200 - height = 700 - padx = 2 - pady = 1 - elif len(histlist) == 3: - width = 1600 - height = 700 - padx = 3 - pady = 1 - elif len(histlist) == 4: - width = 1200 - height = 1000 - padx = 2 - pady = 2 - elif len(histlist) == 6 or len(histlist) == 5: - width = 1600 - height = 1000 - padx = 3 - pady = 2 - else: - raise ValueError('histlist of size ' + str(len(histlist)) + ' not currently supported') - - tdrstyle.setTDRStyle() - - myCan = TCanvas(name,name,width,height) - myCan.Divide(padx,pady) - - # Just some colors that I think work well together and a bunch of empty lists for storage if needed - default_colors = [kRed,kMagenta,kGreen,kCyan,kBlue] - if len(colors) == 0: - colors = default_colors - stacks = [] - tot_hists = [] - legends = [] - mains = [] - subs = [] - pulls = [] - logString = '' - - # For each hist/data distribution - for hist_index, hist in enumerate(histlist): - # Grab the pad we want to draw in - myCan.cd(hist_index+1) - # if len(histlist) > 1: - thisPad = myCan.GetPrimitive(name+'_'+str(hist_index+1)) - thisPad.cd() - - # If this is a TH2, just draw the lego - if hist.ClassName().find('TH2') != -1: - if logy == True: - gPad.SetLogy() - gPad.SetLeftMargin(0.2) - hist.GetXaxis().SetTitle(xtitle) - hist.GetYaxis().SetTitle(ytitle) - hist.GetXaxis().SetTitleOffset(1.5) - hist.GetYaxis().SetTitleOffset(2.3) - hist.GetZaxis().SetTitleOffset(1.8) - if len(titles) > 0: - hist.SetTitle(titles[hist_index]) - - hist.Draw('lego') - if len(bkglist) > 0: - print('ERROR: It seems you are trying to plot backgrounds with data on a 2D plot. This is not supported since there is no good way to view this type of distribution.') - - # Otherwise it's a TH1 hopefully - else: - alpha = 1 - if dataOff: - alpha = 0 - hist.SetLineColorAlpha(kBlack,alpha) - if 'pe' in datastyle.lower(): - hist.SetMarkerColorAlpha(kBlack,alpha) - hist.SetMarkerStyle(8) - if 'hist' in datastyle.lower(): - hist.SetFillColorAlpha(0,0) - - # If there are no backgrounds, only plot the data (semilog if desired) - if len(bkglist) == 0: - hist.GetXaxis().SetTitle(xtitle) - hist.GetYaxis().SetTitle(ytitle) - if len(titles) > 0: - hist.SetTitle(titles[hist_index]) - hist.Draw(datastyle) - - # Otherwise... - else: - # Create some subpads, a legend, a stack, and a total bkg hist that we'll use for the error bars - if not dataOff: - mains.append(TPad(hist.GetName()+'_main',hist.GetName()+'_main',0, 0.3, 1, 1)) - subs.append(TPad(hist.GetName()+'_sub',hist.GetName()+'_sub',0, 0, 1, 0.3)) - - else: - mains.append(TPad(hist.GetName()+'_main',hist.GetName()+'_main',0, 0.1, 1, 1)) - subs.append(TPad(hist.GetName()+'_sub',hist.GetName()+'_sub',0, 0, 0, 0)) - - legends.append(TLegend(0.65,0.6,0.95,0.93)) - stacks.append(THStack(hist.GetName()+'_stack',hist.GetName()+'_stack')) - tot_hist = hist.Clone(hist.GetName()+'_tot') - tot_hist.Reset() - tot_hist.SetTitle(hist.GetName()+'_tot') - tot_hist.SetMarkerStyle(0) - tot_hists.append(tot_hist) - - - # Set margins and make these two pads primitives of the division, thisPad - mains[hist_index].SetBottomMargin(0.0) - mains[hist_index].SetLeftMargin(0.16) - mains[hist_index].SetRightMargin(0.05) - mains[hist_index].SetTopMargin(0.1) - - subs[hist_index].SetLeftMargin(0.16) - subs[hist_index].SetRightMargin(0.05) - subs[hist_index].SetTopMargin(0) - subs[hist_index].SetBottomMargin(0.3) - mains[hist_index].Draw() - subs[hist_index].Draw() - - # Build the stack - for bkg_index,bkg in enumerate(bkglist[hist_index]): # Won't loop if bkglist is empty - # bkg.Sumw2() - tot_hists[hist_index].Add(bkg) - bkg.SetLineColor(kBlack) - if logy: - bkg.SetMinimum(1e-3) - - if bkg.GetName().find('qcd') != -1: - bkg.SetFillColor(kYellow) - - else: - if colors[bkg_index] != None: - bkg.SetFillColor(colors[bkg_index]) - else: - bkg.SetFillColor(default_colors[bkg_index]) - - stacks[hist_index].Add(bkg) - - legends[hist_index].AddEntry(bkg,bkg.GetName().split('_')[0],'f') - - # Go to main pad, set logy if needed - mains[hist_index].cd() - - # Set y max of all hists to be the same to accomodate the tallest - histList = [stacks[hist_index],tot_hists[hist_index],hist] - - yMax = histList[0].GetMaximum() - maxHist = histList[0] - for h in range(1,len(histList)): - if histList[h].GetMaximum() > yMax: - yMax = histList[h].GetMaximum() - maxHist = histList[h] - for h in histList: - h.SetMaximum(yMax*1.1) - if logy == True: - h.SetMaximum(yMax*10) - - - mLS = 0.06 - # Now draw the main pad - data_leg_title = hist.GetTitle() - if len(titles) > 0: - hist.SetTitle(titles[hist_index]) - hist.SetTitleOffset(1.5,"xy") - hist.GetYaxis().SetTitle('Events') - hist.GetYaxis().SetLabelSize(mLS) - hist.GetYaxis().SetTitleSize(mLS) - if logy == True: - hist.SetMinimum(1e-3) - hist.Draw(datastyle) - - stacks[hist_index].Draw('same hist') - - # Do the signals - if len(signals) > 0: - signals[hist_index].SetLineColor(kBlue) - signals[hist_index].SetLineWidth(2) - if logy == True: - signals[hist_index].SetMinimum(1e-3) - legends[hist_index].AddEntry(signals[hist_index],signals[hist_index].GetName().split('_')[0],'L') - signals[hist_index].Draw('hist same') - - tot_hists[hist_index].SetFillColor(kBlack) - tot_hists[hist_index].SetFillStyle(3354) - - tot_hists[hist_index].Draw('e2 same') - # legends[hist_index].Draw() - - if not dataOff: - legends[hist_index].AddEntry(hist,'data',datastyle) - hist.Draw(datastyle+' same') - - gPad.RedrawAxis() - - # Draw the pull - subs[hist_index].cd() - # Build the pull - pulls.append(Make_Pull_plot(hist,tot_hists[hist_index])) - pulls[hist_index].SetFillColor(kBlue) - pulls[hist_index].SetTitle(";"+hist.GetXaxis().GetTitle()+";(Data-Bkg)/#sigma") - pulls[hist_index].SetStats(0) - - LS = .13 - - pulls[hist_index].GetYaxis().SetRangeUser(-2.9,2.9) - pulls[hist_index].GetYaxis().SetTitleOffset(0.4) - pulls[hist_index].GetXaxis().SetTitleOffset(0.9) - - pulls[hist_index].GetYaxis().SetLabelSize(LS) - pulls[hist_index].GetYaxis().SetTitleSize(LS) - pulls[hist_index].GetYaxis().SetNdivisions(306) - pulls[hist_index].GetXaxis().SetLabelSize(LS) - pulls[hist_index].GetXaxis().SetTitleSize(LS) - - pulls[hist_index].GetXaxis().SetTitle(xtitle) - pulls[hist_index].GetYaxis().SetTitle("(Data-Bkg)/#sigma") - pulls[hist_index].Draw('hist') - - if logy == True: - mains[hist_index].SetLogy() - - CMS_lumi.CMS_lumi(thisPad, 4, 11) - - if rootfile: - myCan.Print(tag+'plots/'+name+'.root','root') - else: - myCan.Print(tag+'plots/'+name+'.png','png') +def FindCommonString(string_list): + '''Finds a common string between a list of strings. -def findCommonString(string_list): + Args: + string_list ([str]): List of strings to compare. + + Returns: + str: Matched sub-string. + ''' to_match = '' # initialize the string we're looking for/building for s in string_list[0]: # for each character in the first string passed = True @@ -459,70 +360,16 @@ def findCommonString(string_list): return to_match[:-1] # if not, return to_match minus final character return to_match[:-2] - -def makePullPlot( DATA,BKG): - BKGUP, BKGDOWN = Make_up_down(BKG) - pull = DATA.Clone(DATA.GetName()+"_pull") - pull.Add(BKG,-1) - sigma = 0.0 - FScont = 0.0 - BKGcont = 0.0 - for ibin in range(1,pull.GetNbinsX()+1): - FScont = DATA.GetBinContent(ibin) - BKGcont = BKG.GetBinContent(ibin) - if FScont>=BKGcont: - FSerr = DATA.GetBinErrorLow(ibin) - BKGerr = abs(BKGUP.GetBinContent(ibin)-BKG.GetBinContent(ibin)) - if FScont 1: + thisPad = myCan.GetPrimitive(tag+'_'+str(hist_index+1)) + thisPad.cd() + + # If this is a TH2, just draw the lego + if hist.ClassName().find('TH2') != -1: + if logy == True: + gPad.SetLogy() + gPad.SetLeftMargin(0.2) + hist.GetXaxis().SetTitle(xtitle) + hist.GetYaxis().SetTitle(ytitle) + hist.GetXaxis().SetTitleOffset(1.5) + hist.GetYaxis().SetTitleOffset(2.3) + hist.GetZaxis().SetTitleOffset(1.8) + if len(titles) > 0: + hist.SetTitle(titles[hist_index]) + + hist.Draw('lego') + if len(bkglist) > 0: + print('ERROR: It seems you are trying to plot backgrounds with data on a 2D plot. This is not supported since there is no good way to view this type of distribution.') + + # Otherwise it's a TH1 hopefully + else: + alpha = 1 + if dataOff: + alpha = 0 + hist.SetLineColorAlpha(kBlack,alpha) + if 'pe' in datastyle.lower(): + hist.SetMarkerColorAlpha(kBlack,alpha) + hist.SetMarkerStyle(8) + if 'hist' in datastyle.lower(): + hist.SetFillColorAlpha(0,0) + + # If there are no backgrounds, only plot the data (semilog if desired) + if len(bkglist) == 0: + hist.GetXaxis().SetTitle(xtitle) + hist.GetYaxis().SetTitle(ytitle) + if len(titles) > 0: + hist.SetTitle(titles[hist_index]) + hist.Draw(datastyle) + + # Otherwise... + else: + # Create some subpads, a legend, a stack, and a total bkg hist that we'll use for the error bars + if not dataOff: + mains.append(TPad(hist.GetName()+'_main',hist.GetName()+'_main',0, 0.3, 1, 1)) + subs.append(TPad(hist.GetName()+'_sub',hist.GetName()+'_sub',0, 0, 1, 0.3)) + + else: + mains.append(TPad(hist.GetName()+'_main',hist.GetName()+'_main',0, 0.1, 1, 1)) + subs.append(TPad(hist.GetName()+'_sub',hist.GetName()+'_sub',0, 0, 0, 0)) + + legends.append(TLegend(0.65,0.6,0.95,0.93)) + stacks.append(THStack(hist.GetName()+'_stack',hist.GetName()+'_stack')) + tot_hist = hist.Clone(hist.GetName()+'_tot') + tot_hist.Reset() + tot_hist.SetTitle(hist.GetName()+'_tot') + tot_hist.SetMarkerStyle(0) + tot_hists.append(tot_hist) + + + # Set margins and make these two pads primitives of the division, thisPad + mains[hist_index].SetBottomMargin(0.0) + mains[hist_index].SetLeftMargin(0.16) + mains[hist_index].SetRightMargin(0.05) + mains[hist_index].SetTopMargin(0.1) + + subs[hist_index].SetLeftMargin(0.16) + subs[hist_index].SetRightMargin(0.05) + subs[hist_index].SetTopMargin(0) + subs[hist_index].SetBottomMargin(0.3) + mains[hist_index].Draw() + subs[hist_index].Draw() + + # Build the stack + for bkg_index,bkg in enumerate(bkglist[hist_index]): # Won't loop if bkglist is empty + # bkg.Sumw2() + tot_hists[hist_index].Add(bkg) + bkg.SetLineColor(kBlack) + if logy: + bkg.SetMinimum(1e-3) + + if bkg.GetName().find('qcd') != -1: + bkg.SetFillColor(kYellow) + + else: + if colors[bkg_index] != None: + bkg.SetFillColor(colors[bkg_index]) + else: + bkg.SetFillColor(default_colors[bkg_index]) + + stacks[hist_index].Add(bkg) + + legends[hist_index].AddEntry(bkg,bkg.GetName().split('_')[0],'f') + + # Go to main pad, set logy if needed + mains[hist_index].cd() + + # Set y max of all hists to be the same to accomodate the tallest + histList = [stacks[hist_index],tot_hists[hist_index],hist] + + yMax = histList[0].GetMaximum() + maxHist = histList[0] + for h in range(1,len(histList)): + if histList[h].GetMaximum() > yMax: + yMax = histList[h].GetMaximum() + maxHist = histList[h] + for h in histList: + h.SetMaximum(yMax*1.1) + if logy == True: + h.SetMaximum(yMax*10) + + + mLS = 0.06 + # Now draw the main pad + data_leg_title = hist.GetTitle() + if len(titles) > 0: + hist.SetTitle(titles[hist_index]) + hist.SetTitleOffset(1.5,"xy") + hist.GetYaxis().SetTitle('Events') + hist.GetYaxis().SetLabelSize(mLS) + hist.GetYaxis().SetTitleSize(mLS) + if logy == True: + hist.SetMinimum(1e-3) + hist.Draw(datastyle) + + stacks[hist_index].Draw('same hist') + + # Do the signals + if len(signals) > 0: + signals[hist_index].SetLineColor(kBlue) + signals[hist_index].SetLineWidth(2) + if logy == True: + signals[hist_index].SetMinimum(1e-3) + legends[hist_index].AddEntry(signals[hist_index],signals[hist_index].GetName().split('_')[0],'L') + signals[hist_index].Draw('hist same') + + tot_hists[hist_index].SetFillColor(kBlack) + tot_hists[hist_index].SetFillStyle(3354) + + tot_hists[hist_index].Draw('e2 same') + # legends[hist_index].Draw() + + if not dataOff: + legends[hist_index].AddEntry(hist,'data',datastyle) + hist.Draw(datastyle+' same') + + gPad.RedrawAxis() + + # Draw the pull + subs[hist_index].cd() + # Build the pull + pulls.append(MakePullPlot(hist,tot_hists[hist_index])) + pulls[hist_index].SetFillColor(kBlue) + pulls[hist_index].SetTitle(";"+hist.GetXaxis().GetTitle()+";(Data-Bkg)/#sigma") + pulls[hist_index].SetStats(0) + + LS = .13 + + pulls[hist_index].GetYaxis().SetRangeUser(-2.9,2.9) + pulls[hist_index].GetYaxis().SetTitleOffset(0.4) + pulls[hist_index].GetXaxis().SetTitleOffset(0.9) + + pulls[hist_index].GetYaxis().SetLabelSize(LS) + pulls[hist_index].GetYaxis().SetTitleSize(LS) + pulls[hist_index].GetYaxis().SetNdivisions(306) + pulls[hist_index].GetXaxis().SetLabelSize(LS) + pulls[hist_index].GetXaxis().SetTitleSize(LS) + + pulls[hist_index].GetXaxis().SetTitle(xtitle) + pulls[hist_index].GetYaxis().SetTitle("(Data-Bkg)/#sigma") + pulls[hist_index].Draw('hist') + + if logy == True: + mains[hist_index].SetLogy() + + CMS_lumi.CMS_lumi(thisPad, 4, 11) + + myCan.Print(name,extension) + +def MakePullPlot( data,bkg): + '''Generates a pull plot defined as (data-bkg)/sigma where sigma + is the error of data and bkg added in quadrature. + + Args: + data (TH1): Histogram of data. + bkg (TH1): Histogram of total background. + + Returns: + TH1: Histogram of the pull. + ''' + bkg_up, bkg_down = MakeUpDown(bkg) + pull = data.Clone(data.GetName()+"_pull") + pull.Add(bkg,-1) + for ibin in range(1,pull.GetNbinsX()+1): + idata = data.GetBinContent(ibin) + ibkg = bkg.GetBinContent(ibin) + + if idata >= ibkg: # deal with asymmetric bin errors + idata_err = data.GetBinErrorLow(ibin) + ibkg_err = abs(bkg_up.GetBinContent(ibin)-bkg.GetBinContent(ibin)) + else: + idata_err = data.GetBinErrorUp(ibin) + ibkg_err = abs(bkg_down.GetBinContent(ibin)-bkg.GetBinContent(ibin)) + + if idata_err != None: # deal with case when there's no data error (ie. bin content = 0) + sigma = sqrt(idata_err*idata_err + ibkg_err*ibkg_err) + else: + sigma = sqrt(ibkg_err*ibkg_err) + + if sigma != 0 : + ipull = (pull.GetBinContent(ibin))/sigma + pull.SetBinContent(ibin, ipull) + else : + pull.SetBinContent(ibin, 0.0 ) + + return pull + +def MakeUpDown(hist): + '''Creates up and down variations of a histogram + based on its per-bin errors. + + Args: + hist (TH1): Histogram from which to create up/down distributions. + + Returns: + (TH1, TH1): Tuple of (up, down) histograms. + ''' + hist_up = hist.Clone(hist.GetName()+'_up') + hist_down = hist.Clone(hist.GetName()+'_down') + + for xbin in range(1,hist.GetNbinsX()+1): + errup = hist.GetBinErrorUp(xbin) + errdown = hist.GetBinErrorLow(xbin) + nom = hist.GetBinContent(xbin) + + hist_up.SetBinContent(xbin,nom+errup) + hist_down.SetBinContent(xbin,nom-errdown) + + return hist_up,hist_down \ No newline at end of file From d25f63ed438a95ceb1aa8db912141b3e8ebe9c8b Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 16:26:22 -0400 Subject: [PATCH 10/17] Add to test_Common.py --- test/test_Common.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/test/test_Common.py b/test/test_Common.py index f961c61..b0e31ee 100644 --- a/test/test_Common.py +++ b/test/test_Common.py @@ -15,4 +15,7 @@ def test_openJSON(self): pass def test_GetHistBinningTuple(self): + pass + + def test_StitchQCD(self): pass \ No newline at end of file From 7fd2fddc1ec6b83b8ee20f56b937d9c9b4baaa68 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 17:51:51 -0400 Subject: [PATCH 11/17] Fix links and change to @param for arguments --- TIMBER/Analyzer.py | 339 +++++++++++++++---------------------- TIMBER/Framework/README.md | 2 +- TIMBER/Tools/Common.py | 84 +++++---- TIMBER/Tools/Plot.py | 46 +++-- 4 files changed, 210 insertions(+), 261 deletions(-) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index 6f1a4ba..d85649a 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -4,7 +4,7 @@ """ -from TIMBER.Tools.Common import GetHistBinningTuple, CompileCpp +from TIMBER.Tools.Common import GetHistBinningTuple, CompileCpp, ConcatCols from clang import cindex from collections import OrderedDict @@ -31,20 +31,18 @@ class analyzer(object): When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new #ActiveNode""" def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): - """ - Constructor. Setups the tracking of actions on an RDataFrame as nodes. Also + """Constructor. + + Sets up the tracking of actions on an RDataFrame as nodes. Also looks up and stores common information in NanoAOD such as the number of generated events in a file (#genEventCount), the LHA ID of the PDF set in the `LHEPdfWeights` branch (#lhaid), if the file is data (#isData), and if the file is before NanoAOD version 6 (#preV6). - Args: - fileName (str): A ROOT file path or the path to a txt file which contains several ROOT file paths separated by + @param fileName (str): A ROOT file path or the path to a txt file which contains several ROOT file paths separated by new line characters. - - eventsTreeName (str): Name of TTree in fileName where events are stored. Defaults to "Events" (for NanoAOD) - - runTreeName (str): NAme of TTree in fileName where run information is stored (for generated event info in + @param eventsTreeName (str, optional): Name of TTree in fileName where events are stored. Defaults to "Events" (for NanoAOD) + @param runTreeName (str, optional): NAme of TTree in fileName where run information is stored (for generated event info in simulation). Defaults to "Runs" (for NanoAOD) """ @@ -56,10 +54,10 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): # Node # # Initial Node - no modifications. - ## @var DataFrames - # dict + ## @var AllNodes + # {str:Node} # - # All data frames. + # List of all nodes being tracked. ## @var Corrections # dict # @@ -153,6 +151,8 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): @property def DataFrame(self): ''' + DataFrame of the ActiveNode + Returns: RDataFrame: Dataframe for the active node. ''' @@ -165,8 +165,7 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') def SetActiveNode(self,node): '''Sets the active node. - Args: - node (Node): Node to set as #ActiveNode. + @param node (Node): Node to set as #ActiveNode. Raises: ValueError: If argument type is not Node. @@ -197,10 +196,9 @@ def GetBaseNode(self): def TrackNode(self,node): '''Add a node to track. - Will add the node to #DataFrames dictionary with key node.name. + Will add the node to #AllNodes dictionary with key node.name. - Args: - node (Node): Node to start tracking. + @param node (Node): Node to start tracking. Raises: NameError: If attempting to track nodes of the same name. @@ -217,7 +215,8 @@ def TrackNode(self,node): raise TypeError('TrackNode() does not support arguments of type %s. Please provide a Node.'%(type(node))) def GetTrackedNodeNames(self): - ''' + '''Gets the names of the nodes currently being tracked. + Returns: [str]: List of names of nodes being tracked. ''' @@ -235,9 +234,8 @@ def FilterColumnNames(self,columns,node=None): '''Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node. - Args: - columns ([str]): List of column names (str) - node (Node, optional): Node to compare against. Defaults to #BaseNode. + @param columns ([str]): List of column names (str) + @param node (Node, optional): Node to compare against. Defaults to #BaseNode. Returns: [str]: List of column names that union with those in the RDataFrame. @@ -251,58 +249,32 @@ def FilterColumnNames(self,columns,node=None): return out - def ConcatCols(self,colnames,val='1',connector='&&'): - '''Concatenates a list of column names evaluating to a common `val` (usually 1 or 0) - with some `connector` (boolean logic operator). - - Args: - colnames ([str]): List of column names (str). - val (str, optional): Value to test equality of all columns. Defaults to '1'. - connector (str, optional): C++ boolean logic operator between column equality checks. Defaults to '&&'. - - Returns: - str: Concatenated string of the entire evaluation that in C++ will return a bool. - ''' - concat = '' - for i,c in enumerate(colnames): - if concat == '': - concat = '((%s==%s)'%(c,val) - else: - concat += ' %s (%s==%s)'%(connector,c,val) - - if concat != '': - concat += ')' - - return concat - def GetTriggerString(self,trigList): '''Checks input list for missing triggers and drops those missing (#FilterColumnNames) - and then concatenates those remaining into an OR (`||`) string (#ConcatCols) + and then concatenates those remaining into an OR (`||`) string. - Args: - trigList [str]: List of trigger names + @param trigList [str]: List of trigger names Returns: str: Statement to evaluate as the set of triggers. ''' trig_string = '' available_trigs = self.FilterColumnNames(trigList) - trig_string = self.ConcatCols(available_trigs,'1','||') + trig_string = ConcatCols(available_trigs,'1','||') return trig_string def GetFlagString(self,flagList): '''Checks input list for missing flags and drops those missing (#FilterColumnNames) - and then concatenates those remaining into an AND string (#ConcatCols) + and then concatenates those remaining into an AND string. - Args: - flagList [str]: List of flag names + @param flagList [str]: List of flag names Returns: str: Statement to evaluate as the set of flags. ''' flag_string = '' available_flags = self.FilterColumnNames(flagList) - flag_string = self.ConcatCols(available_flags,'1','&&') + flag_string = ConcatCols(available_flags,'1','&&') return flag_string def GetFileName(self): @@ -322,10 +294,9 @@ def Cut(self,name,cuts,node=None): '''Apply a cut/filter to a provided node or the #ActiveNode by default. Will add the resulting node to tracking and set it as the #ActiveNode. - Args: - name (str): Name for the cut for internal tracking and later reference. - cuts (str,#CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans. - node (Node, optional): Node on which to apply the cut/filter. Defaults to #ActiveNode. + @param name (str): Name for the cut for internal tracking and later reference. + @param cuts (str, CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans. + @param node (Node, optional): Node on which to apply the cut/filter. Defaults to #ActiveNode. Raises: TypeError: If argument type is not Node. @@ -354,17 +325,16 @@ def Define(self,name,variables,node=None): '''Defines a variable/column on top of a provided node or the #ActiveNode by default. Will add the resulting node to tracking and set it as the #ActiveNode. - Args: - name (str): Name for the column for internal tracking and later reference. - cuts (str,#VarGroup): A one-line C++ string that evaluates to desired value to store - or a #VarGroup object which contains multiple actions that evaluate to the desired values. - node (Node, optional): Node to create the new variable/column on top of. Defaults to #ActiveNode. + @param name (str): Name for the column for internal tracking and later reference. + @param variables (str, VarGroup): A one-line C++ string that evaluates to desired value to store + or a VarGroup object which contains multiple actions that evaluate to the desired values. + @param node (Node, optional): Node to create the new variable/column on top of. Defaults to #ActiveNode. Raises: TypeError: If argument type is not Node. Returns: - Node: New #ActiveNode. + Node: New ActiveNode. ''' if node == None: node = self.ActiveNode newNode = node @@ -389,10 +359,9 @@ def Define(self,name,variables,node=None): def Apply(self,actionGroupList,node=None,trackEach=True): '''Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. - Args: - actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. - node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. - trackEach (bool, optional): [description]. Defaults to True. + @param actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. + @param node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + @param trackEach (bool, optional): [description]. Defaults to True. Raises: TypeError: If argument type is not Node. @@ -421,11 +390,10 @@ def Apply(self,actionGroupList,node=None,trackEach=True): def Discriminate(self,name,discriminator,node=None,passAsActiveNode=None): '''Forks a node based upon a discriminator being True or False (#ActiveNode by default). - Args: - name (str): Name for the discrimination for internal tracking and later reference. - discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate for the forking of the node. - node (Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. - passAsActiveNode (bool, optional): True if the #ActiveNode should be set to the node that passes the discriminator. + @param name (str): Name for the discrimination for internal tracking and later reference. + @param discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate for the forking of the node. + @param node (Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + @param passAsActiveNode (bool, optional): True if the #ActiveNode should be set to the node that passes the discriminator. False if the #ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the #ActiveNode does not change. Returns: @@ -451,11 +419,10 @@ def AddCorrection(self,correction,evalArgs=[],node=None): '''Add a Correction to track. Sets new active node with all correction variations calculated as new columns. - Args: - correction (Correction): Correction object to add. - evalArgs ([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. + @param correction (Correction): Correction object to add. + @param evalArgs ([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame. - node (Node, optional): Node to add correction on top of. Defaults to #ActiveNode. + @param node (Node, optional): Node to add correction on top of. Defaults to #ActiveNode. Raises: TypeError: If argument types are not Node and Correction. @@ -495,9 +462,8 @@ def AddCorrections(self,correctionList,node=None): '''Add multiple Corrections to track. Sets new #ActiveNode with all correction variations calculated as new columns. - Args: - correctionList ([Correction]): List of Correction objects to add. - node (Node, optional): [description]. Defaults to None. + @param correctionList ([Correction]): List of Correction objects to add. + @param node (Node, optional): [description]. Defaults to None. Returns: Node: New #ActiveNode. @@ -513,9 +479,8 @@ def AddCorrections(self,correctionList,node=None): def __checkCorrections(self,correctionNames,dropList): '''Does type checking and drops specified corrections by name. - Args: - correctionNames ([str]): List of correction names to include. - dropList ([type]): List of correction names to drop. + @param correctionNames ([str]): List of correction names to include. + @param dropList ([type]): List of correction names to drop. Raises: ValueError: If lists aren't provided. @@ -554,11 +519,10 @@ def MakeWeightCols(self,node=None,correctionNames=None,dropList=[]): A list of correction names can be provided if only a subset of the corrections being tracked are desired. A drop list can also be supplied to remove a subset of corrections. - Args: - node (Node): Node to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. - correctionNames list(str): List of correction names (strings) to consider. Default is None in which case all corrections + @param node (Node): Node to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. + @param correctionNames list(str): List of correction names (strings) to consider. Default is None in which case all corrections being tracked are considered. - dropList list(str): List of correction names (strings) to not consider. Default is empty lists in which case no corrections + @param dropList list(str): List of correction names (strings) to not consider. Default is empty lists in which case no corrections are dropped from consideration. Returns: @@ -599,10 +563,9 @@ def MakeWeightCols(self,node=None,correctionNames=None,dropList=[]): def MakeTemplateHistos(self,templateHist,variables,node=None): '''Generates the uncertainty template histograms based on the weights created by #MakeWeightCols(). - Args: - templateHist (TH1,TH2,TH3): A TH1, TH2, or TH3 used as a template to create the histograms. - variables ([str]): A list of the columns/variables to plot (ex. ["x","y","z"]). - node (Node): Node to plot histograms from. Defaults to #ActiveNode. + @param templateHist (TH1,TH2,TH3): A TH1, TH2, or TH3 used as a template to create the histograms. + @param variables ([str]): A list of the columns/variables to plot (ex. ["x","y","z"]). + @param node (Node): Node to plot histograms from. Defaults to #ActiveNode. Returns: HistGroup: Uncertainty template histograms. @@ -648,12 +611,11 @@ def MakeTemplateHistos(self,templateHist,variables,node=None): def DrawTemplates(self,hGroup,saveLocation,projection='X',projectionArgs=(),fileType='pdf'): '''Draw the template uncertainty histograms created by #MakeTemplateHistos(). - Args: - hGroup (HistGroup): Uncertainty template histograms. - saveLocation (str): Path to folder to save histograms. - projection (str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. - projectionArgs (tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). - fileType (str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()). + @param hGroup (HistGroup): Uncertainty template histograms. + @param saveLocation (str): Path to folder to save histograms. + @param projection (str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. + @param projectionArgs (tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). + @param fileType (str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()). Returns: None @@ -718,9 +680,8 @@ def Nminus1(self,node,cutgroup): The structure is optimized so that as many actions are shared as possible so that the N different nodes can be made. Use #PrintNodeTree() to visualize. - Args: - node (Node): Node to build on. - cutgroup (CutGroup): Group of N cuts to apply. + @param node (Node): Node to build on. + @param cutgroup (CutGroup): Group of N cuts to apply. Returns: dict: N nodes in dictionary with keys indicating the cut that was not applied. @@ -756,9 +717,8 @@ def PrintNodeTree(self,outfilename,verbose=False): '''Print a PDF image of the node structure of the analysis. Requires python graphviz package which should be an installed dependency. - Args: - outfilename (str): Name of output PDF file. - verbose (bool, optional): Turns on verbose node labels. Defaults to False. + @param outfilename (str): Name of output PDF file. + @param verbose (bool, optional): Turns on verbose node labels. Defaults to False. Returns: None @@ -785,17 +745,29 @@ class Node(object): relations between nodes (done automatically via Define, Cut, Discriminate)''' def __init__(self, name, DataFrame, action='', children=[]): '''Constructor. Holds the RDataFrame and other associated information - for tracking in the #analyzer(). + for tracking in the {@link analyzer}. Methods which act on the RDataFrame always return a new node since RDataFrame is not modified in place. - Args: - name (str): Name for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer. - DataFrame (RDataFrame): Dataframe to track. - children ([Node], optional): Child nodes if they exist. Defaults to []. - action (str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame. + @param name (str): Name for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer. + @param DataFrame (RDataFrame): Dataframe to track. + @param children ([Node], optional): Child nodes if they exist. Defaults to []. + @param action (str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame. ''' + ## @var DataFrame + # + # DataFrame for the Node. + ## @var name + # + # Name of the Node. + ## @var action + # + # Action performed to create this Node. + ## @var children + # + # List of child nodes. + super(Node, self).__init__() self.DataFrame = DataFrame self.name = name @@ -805,8 +777,7 @@ def __init__(self, name, DataFrame, action='', children=[]): def Clone(self,name=''): '''Clones Node instance without child information and with new name if specified. - Args: - name (str, optional): Name for clone. Defaults to current name. + @param name (str, optional): Name for clone. Defaults to current name. Returns: Node: Clone of current instance. @@ -817,9 +788,8 @@ def Clone(self,name=''): def SetChild(self,child,overwrite=False): '''Set one of child for the node. - Args: - child (Node): Child node to add. - overwrite (bool, optional): Overwrites all current children stored. Defaults to False. + @param child (Node): Child node to add. + @param overwrite (bool, optional): Overwrites all current children stored. Defaults to False. Raises: TypeError: If argument type is not Node. @@ -839,9 +809,8 @@ def SetChild(self,child,overwrite=False): def SetChildren(self,children,overwrite=False): '''Set multiple children for the node. - Args: - children ([Node], {str:Node}): List of children or dictionary of children. - overwrite (bool, optional): Overwrites all current children stored. Defaults to False. + @param children ([Node], {str:Node}): List of children or dictionary of children. + @param overwrite (bool, optional): Overwrites all current children stored. Defaults to False. Raises: TypeError: If argument type is not dict or list of Node. @@ -867,9 +836,8 @@ def SetChildren(self,children,overwrite=False): def Define(self,name,var): '''Produces a new Node with the provided variable/column added. - Args: - name (str): Name for the column for internal tracking and later reference. - cuts (str): A one-line C++ string that evaluates to desired value to store. + @param name (str): Name for the column for internal tracking and later reference. + @param var (str): A one-line C++ string that evaluates to desired value to store. Returns: Node: New Node object with new column added. @@ -882,12 +850,11 @@ def Define(self,name,var): def Cut(self,name,cut): '''Produces a new Node with the provided cut/filter applied. - Args: - name (str): Name for the cut for internal tracking and later reference. - cuts (str): A one-line C++ string that evaluates as a boolean. + @param name (str): Name for the cut for internal tracking and later reference. + @param cut (str): A one-line C++ string that evaluates as a boolean. Returns: - Node: New #ActiveNode. + Node: New Node object with cut applied. ''' print('Filtering %s: %s' %(name,cut)) newNode = Node(name,self.DataFrame.Filter(cut,name),children=[],action=cut) @@ -895,11 +862,10 @@ def Cut(self,name,cut): return newNode def Discriminate(self,name,discriminator): - '''Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False. + '''Produces a dictionary with two new Nodes made by forking this Node based upon a discriminator being True or False. - Args: - name (str): Name for the discrimination for internal tracking and later reference. - discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate on. + @param name (str): Name for the discrimination for internal tracking and later reference. + @param discriminator (str): A one-line C++ string that evaluates as a boolean to discriminate on. Returns: dict: Dictionary with keys "pass" and "fail" corresponding to the passing and failing Nodes stored as values. @@ -911,23 +877,20 @@ def Discriminate(self,name,discriminator): self.SetChildren(passfail) return passfail - def Apply(self,actiongrouplist): - '''Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. + def Apply(self,actionGroupList): + '''Applies a single CutGroup/VarGroup or an ordered list of Groups to this Node to produce a new final Node. - Args: - actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. - node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. - trackEach (bool, optional): [description]. Defaults to True. + @param actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. Raises: TypeError: If argument type is not Node. Returns: - Node: New #ActiveNode. + Node: New Node with all actions applied. ''' - if type(actiongrouplist) != list: actiongrouplist = [actiongrouplist] + if type(actionGroupList) != list: actionGroupList = [actionGroupList] node = self - for ag in actiongrouplist: + for ag in actionGroupList: if isinstance(ag,CutGroup): for c in ag.keys(): cut = ag[c] @@ -948,13 +911,12 @@ def Snapshot(self,columns,outfilename,treename,lazy=False,openOption='RECREATE') '''Takes a snapshot of the RDataFrame corresponding to this Node. Compression algorithm set to 1 (ZLIB) and compression level are set to 1. - Args: - columns ([str] or str): List of columns to keep (str) with regex matching. + @param columns ([str] or str): List of columns to keep (str) with regex matching. Provide single string 'all' to include all columns. - outfilename (str): Name of the output file - treename ([type]): Name of the output TTree - lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. - openOption (str, optional): TFile opening options. Defaults to 'RECREATE'. + @param outfilename (str): Name of the output file + @param treename ([type]): Name of the output TTree + @param lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. + @param openOption (str, optional): TFile opening options. Defaults to 'RECREATE'. Returns: None @@ -986,7 +948,6 @@ class Group(object): def __init__(self, name): '''Constructor - Args: name (str): Name for instance. ''' ## @var name @@ -1009,9 +970,8 @@ def __init__(self, name): def Add(self,name,item,copy=False): '''Add item to Group with a name. Modifies in-place. - Args: - name (str): Name/key for added item. - item (obj): Item to add. + @param name (str): Name/key for added item. + @param item (obj): Item to add. Returns: None @@ -1021,8 +981,7 @@ def Add(self,name,item,copy=False): def Drop(self,name,copy=False): '''Drop item from Group with provided name/key. Modifies in-place. - Args: - name (str): Name/key for dropped item. + @param name (str): Name/key for dropped item. Returns: None @@ -1032,8 +991,7 @@ def Drop(self,name,copy=False): def Clone(self,name): '''Clone the current group with a new name. - Args: - name (str): Name for clone. + @param name (str): Name for clone. Returns: Group: Group clone (will be VarGroup, CutGroup, or HistGroup if applicable). @@ -1050,8 +1008,7 @@ def __add__(self,other): If groups do not have matching #type, a generic Group will be returned. Ex. `newgroup = group1 + group2` - Args: - other (Group): Group to add to current Group. + @param other (Group): Group to add to current Group. Returns: Group: Addition of the two groups (will be VarGroup, CutGroup, or HistGroup if applicable). @@ -1085,9 +1042,8 @@ def __setitem__(self, key, value): '''Set key-value pair as you would with dictionary. Ex. `mygroup["item_name"] = new_value` - Args: - key (obj): Key for value. - value (obj): Value to store. + @param key (obj): Key for value. + @param value (obj): Value to store. ''' self.items[key] = value @@ -1095,8 +1051,7 @@ def __getitem__(self,key): '''Get value from key as you would with dictionary. Ex. `val = mygroup["item_name"]` - Args: - key (obj): Key for name/key in Group. + @param key (obj): Key for name/key in Group. Returns: obj: Item for given key. ''' @@ -1108,8 +1063,7 @@ class CutGroup(Group): def __init__(self, name): '''Constructor - Args: - name (str): Name for instance. + @param name (str): Name for instance. ''' super(CutGroup,self).__init__(name) self.type = 'cut' @@ -1120,8 +1074,7 @@ class VarGroup(Group): def __init__(self, name): '''Constructor - Args: - name (str): Name for instance. + @param name (str): Name for instance. ''' super(VarGroup,self).__init__(name) self.type = 'var' @@ -1132,8 +1085,7 @@ class HistGroup(Group): def __init__(self, name): '''Constructor - Args: - name (str): Name for instance. + @param name (str): Name for instance. ''' super(HistGroup,self).__init__(name) self.type = 'hist' @@ -1141,11 +1093,12 @@ def __init__(self, name): def Do(self,THmethod,argsTuple=()): '''Batch act on histograms using ROOT TH1/2/3 methods. - Args: - THmethod (str): String of the ROOT TH1/2/3 method to use. - argsTuple (tuple): Tuple of arguments to pass to THmethod. + @param THmethod (str): String of the ROOT TH1/2/3 method to use. + @param argsTuple (tuple): Tuple of arguments to pass to THmethod. + Returns: HistGroup or None: New HistGroup with THmethod applied if THmethod does not return None; else None. + Example: To scale all histograms by 0.5 myHistGroup.Do("Scale",(0.5)) @@ -1188,18 +1141,17 @@ class Correction(object): def __init__(self,name,script,constructor=[],mainFunc='eval',corrtype='',columnList=None,isClone=False): '''Constructor - Args: - name (str): Correction name. - script (str): Path to C++ script with function to calculate correction. - constructor ([str], optional): List of arguments to script class constructor. Defaults to []. - mainFunc (str, optional): Name of the function to use inside script. Defaults to None + @param name (str): Correction name. + @param script (str): Path to C++ script with function to calculate correction. + @param constructor ([str], optional): List of arguments to script class constructor. Defaults to []. + @param mainFunc (str, optional): Name of the function to use inside script. Defaults to None and the class will try to deduce it. - corrtype (str, optional): Either "weight" (nominal weight to apply with an uncertainty) or + @param corrtype (str, optional): Either "weight" (nominal weight to apply with an uncertainty) or "uncert" (only an uncertainty). Defaults to '' and the class will try to deduce it. - columnList ([str], optional): List of column names to search mainFunc arguments against. - Defaults to None and the standard NanoAOD columns from #LoadColumnNames() will be used. - isClone (bool, optional): For internal use when cloning. Defaults to False. If True, will + @param columnList ([str], optional): List of column names to search mainFunc arguments against. + Defaults to None and the standard NanoAOD columns from LoadColumnNames() will be used. + @param isClone (bool, optional): For internal use when cloning. Defaults to False. If True, will not duplicately recompile the same script if two functions are needed in one C++ script. ''' @@ -1231,9 +1183,8 @@ def Clone(self,name,newMainFunc=None): If multiple functions are in the same script, one can clone the correction and reassign the mainFunc to avoid compiling the same script twice. - Args: - name (str): Clone name. - newMainFunc (str, optional): Name of the function to use inside script. Defaults to None and the original is used. + @param name (str): Clone name. + @param newMainFunc (str, optional): Name of the function to use inside script. Defaults to None and the original is used. Returns: Correction: Clone of instance with same script but different function (newMainFunc). ''' @@ -1244,8 +1195,7 @@ def __getScript(self,script): '''Does a basic check that script file exists and modifies path if necessary so relative paths to TIMBER/Framework/ can be used. - Args: - script (str): Name of script (must exist on system PATH). + @param script (str): Name of script (must exist on system PATH). Raises: NameError: If file does not exist. @@ -1270,8 +1220,7 @@ def __setType(self,inType): must have suffic '_weight' or '_SF' for weight type (correction plus uncertainties) or '_uncert' for 'uncert' type (only uncertainties). - Args: - inType (str): Type of Correction. Use '' to deduce from input script name. + @param inType (str): Type of Correction. Use '' to deduce from input script name. Raises: NameError: If inType is '' and the type cannot be deduced from the input @@ -1296,8 +1245,7 @@ def __setType(self,inType): def __getFuncInfo(self,funcname): '''Parses script with clang to get the function information including name, namespace, and argument names. - Args: - funcname (str): C++ class method name to search for in script. + @param funcname (str): C++ class method name to search for in script. Returns: OrderedDict: Dictionary organized as `myreturn[methodname][argname] = argtype`. @@ -1343,8 +1291,7 @@ def __getFuncInfo(self,funcname): def __instantiate(self,args): '''Instantiates the class in the provided script with the provided arguments. - Args: - args ([str]): Ordered list of arguments to provide to C++ class to instantiate + @param args ([str]): Ordered list of arguments to provide to C++ class to instantiate the object in memory. ''' classname = self.__mainFunc.split('::')[-2] @@ -1361,22 +1308,16 @@ def __instantiate(self,args): def MakeCall(self,inArgs = []): '''Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input. - Args: - inArgs (list, optional): [description]. Defaults to []. + @param inArgs (list, optional): List of arguments (branch/column names) to provide to per-event evaluation method. + Defaults to [] in which case the arguements are deduced from what is written in the C++ script. Raises: NameError: If argument written in C++ script cannot be found in available columns. ValueError: If provided number of arguments does not match the number in the method. - ''' - """ - - Args: - inArgs ([str], optional): List of arguments (branch/column names) to provide to per-event evaluation method. - Defaults to [] in which case the arguements are deduced from what is written in the C++ script. Returns str: Call to function from C++ script. - """ + ''' args_to_use = [] if len(inArgs) == 0: @@ -1403,8 +1344,7 @@ def MakeCall(self,inArgs = []): def GetCall(self,inArgs = []): '''Gets the call to the method to be evaluated per-event. - Args: - inArgs (list, optional): Args to use for eval if #MakeCall() has not already been called. Defaults to []. + @param inArgs (list, optional): Args to use for eval if #MakeCall() has not already been called. Defaults to []. If #MakeCall() has not already been called and inArgs == [], then the arguments to the method will be deduced from the C++ method definition argument names. @@ -1440,6 +1380,7 @@ def GetCall(self,inArgs = []): def GetMainFunc(self): '''Gets full main function name. + Returns: str: Name of function assigned from C++ script. ''' @@ -1447,6 +1388,7 @@ def GetMainFunc(self): def GetType(self): '''Gets Correction type. + Returns: str: Correction type. ''' @@ -1454,6 +1396,7 @@ def GetType(self): def GetFuncNames(self): '''Gets list of function names in C++ script. + Returns: [str]: List of possible function names found in C++ script. ''' @@ -1463,7 +1406,7 @@ def LoadColumnNames(source=''): '''Loads column names from a text file. Args: - source (str, optional): File location if default TIMBER/data/NanoAODv6_cols.txt + @param source (str, optional): File location if default TIMBER/data/NanoAODv6_cols.txt is not to be used. Defaults to ''. Returns: diff --git a/TIMBER/Framework/README.md b/TIMBER/Framework/README.md index 09dc638..9230aa4 100644 --- a/TIMBER/Framework/README.md +++ b/TIMBER/Framework/README.md @@ -5,7 +5,7 @@ Home to generic C++ modules. # Developer Notes Adding C++ modules for use in TIMBER is relatively simple but the code makes several -assumptions about the structure of the module if you'd like to use it as a #Correction. +assumptions about the structure of the module if you'd like to use it as a @ref TIMBER.Analyzer.Correction. A correction module should be built as a class so that the initializer can be used to book objects like files, histograms, etc that we want to load before looping over the RDataFrame. diff --git a/TIMBER/Tools/Common.py b/TIMBER/Tools/Common.py index aff2bc3..1c272b4 100755 --- a/TIMBER/Tools/Common.py +++ b/TIMBER/Tools/Common.py @@ -15,10 +15,9 @@ def CutflowHist(name,node,efficiency=False): '''Draws a cutflow histogram using the report feature of RDF. - Args: - name (str): Name of output histogram - node (Node): Input Node from which to get the cutflow. - efficiency (bool, optional): Reports an efficiency instead of yields + @param name (str): Name of output histogram + @param node (Node): Input Node from which to get the cutflow. + @param efficiency (bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node). Returns: @@ -44,10 +43,9 @@ def CutflowHist(name,node,efficiency=False): def CutflowTxt(name,node,efficiency=False): '''Writes out the cutflow as a text file using the report feature of RDF. - Args: - name (str): Name of output text file. - node (Node): Input Node from which to get the cutflow. - efficiency (bool, optional): Reports an efficiency instead of yields + @param name (str): Name of output text file. + @param node (Node): Input Node from which to get the cutflow. + @param efficiency (bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node). Returns: @@ -70,9 +68,8 @@ def CutflowTxt(name,node,efficiency=False): def StitchQCD(QCDdict,normDict=None): '''Stitches together histograms in QCD hist groups. - Args: - QCDdict ({string:HistGroup}): Dictionary of HistGroup objects - normDict ({string:float}): Factors to normalize each sample to where keys must match QCDdict keys. + @param QCDdict ({string:HistGroup}): Dictionary of HistGroup objects + @param normDict ({string:float}): Factors to normalize each sample to where keys must match QCDdict keys. Default to None and assume normalization has already been done. Returns: HistGroup: New HistGroup with histograms in group being the final stitched versions @@ -105,9 +102,8 @@ def CompileCpp(blockcode,library=False): as a library and if in the future the C++ script is older than the library, then the library will be loaded instead. - Args: - blockcode (str): Either a block of C++ code or a file name to open. - library (bool, optional): Compiles a library which can be later loaded + @param blockcode (str): Either a block of C++ code or a file name to open. + @param library (bool, optional): Compiles a library which can be later loaded to avoid compilation time. Defaults to False. ''' if os.environ["TIMBERPATH"] not in ROOT.gSystem.GetIncludePath(): @@ -146,8 +142,7 @@ def CompileCpp(blockcode,library=False): def OpenJSON(filename): '''Opens JSON file as a dictionary (accounting for unicode encoding) - Args: - filename (str): JSON file name to open. + @param filename (str): JSON file name to open. Returns: dict: Python dictionary with JSON content. @@ -159,8 +154,7 @@ def AsciiEncodeDict(data): Credit Andrew Clark on [StackOverflow](https://stackoverflow.com/questions/9590382/forcing-python-json-module-to-work-with-ascii/28339920). - Args: - data (dict): Input dictionary. + @param data (dict): Input dictionary. Returns: dict: New dictionary with unicode converted to ascii. @@ -168,6 +162,29 @@ def AsciiEncodeDict(data): ascii_encode = lambda x: x.encode('ascii') if isinstance(x, unicode) else x return dict(map(ascii_encode, pair) for pair in data.items()) +def ConcatCols(self,colnames,val='1',connector='&&'): + '''Concatenates a list of column names evaluating to a common `val` (usually 1 or 0) + with some `connector` (boolean logic operator). + + @param colnames ([str]): List of column names. + @param val (str): Value to test equality of all columns. Defaults to '1'. + @param connector (str): C++ boolean logic operator between column equality checks. Defaults to '&&'. + + Returns: + str: Concatenated string of the entire evaluation that in C++ will return a bool. + ''' + concat = '' + for i,c in enumerate(colnames): + if concat == '': + concat = '((%s==%s)'%(c,val) + else: + concat += ' %s (%s==%s)'%(connector,c,val) + + if concat != '': + concat += ')' + + return concat + def GetHistBinningTuple(h): # At least 1D (since TH2 and TH3 inherit from TH1) if isinstance(h,ROOT.TH1): @@ -214,9 +231,8 @@ def ColliMate(myString,width=18): Recommended instead to use format() method of python strings as described [here](https://stackoverflow.com/questions/10623727/python-spacing-and-aligning-strings). - Args: - myString (str): String to space (words only separated by single space). - width (int, optional): Column widths. Defaults to 18. + @param myString (str): String to space (words only separated by single space). + @param width (int, optional): Column widths. Defaults to 18. Returns: str: String with new spacing between words. @@ -237,8 +253,7 @@ def ColliMate(myString,width=18): def DictStructureCopy(inDict): '''Recursively copies the structure of a dictionary with non-dict items replaced with 0. - Args: - inDict (dict): Dictionary with structure to copy. + @param inDict (dict): Dictionary with structure to copy. Returns: dict: Output dict. @@ -254,8 +269,7 @@ def DictStructureCopy(inDict): def DictCopy(inDict): '''Recursively copy dictionary structure and values. - Args: - inDict (dict): Dictionary to copy. + @param inDict (dict): Dictionary to copy. Returns: dict: Output copy. @@ -272,9 +286,8 @@ def ExecuteCmd(cmd,dryrun=False): '''Executes shell command via `subprocess.call()` and prints the command for posterity. - Args: - cmd (str): Shell command to run. - dryrun (bool, optional): Prints command but doesn't execute it. Defaults to False. + @param cmd (str): Shell command to run. + @param dryrun (bool, optional): Prints command but doesn't execute it. Defaults to False. ''' print('Executing: '+cmd) if not dryrun: @@ -285,11 +298,10 @@ def DictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): a LaTeX table. First set of keys (ie. external) are rows, second (ie. internal) are columns. If the column entry for a given row is not provided (ie. missing key), then '-' is substituted. - Args: - dict2convert (dict): Input dictionary. - outfilename (str): Output .tex file name. - roworder (list, optional): Custom ordering of rows. Defaults to [] in which case the sorted keys are used. - columnorder (list, optional): Custom ordering of columns. Defaults to [] in which case the sorted keys are used. + @param dict2convert (dict): Input dictionary. + @param outfilename (str): Output .tex file name. + @param roworder (list, optional): Custom ordering of rows. Defaults to [] in which case the sorted keys are used. + @param columnorder (list, optional): Custom ordering of columns. Defaults to [] in which case the sorted keys are used. ''' # Determine order of rows and columns if len(roworder) == 0: @@ -337,8 +349,7 @@ def DictToLatexTable(dict2convert,outfilename,roworder=[],columnorder=[]): def FindCommonString(string_list): '''Finds a common string between a list of strings. - Args: - string_list ([str]): List of strings to compare. + @param string_list ([str]): List of strings to compare. Returns: str: Matched sub-string. @@ -367,8 +378,7 @@ def cd(newdir): a python script. Useful to use if you're producing a lot of files in a dedicated folder. Change into the folder and then produce the files. - Args: - newdir (str): Directory to cd into. + @param newdir (str): Directory to cd into. ''' prevdir = os.getcwd() os.chdir(os.path.expanduser(newdir)) diff --git a/TIMBER/Tools/Plot.py b/TIMBER/Tools/Plot.py index 1edc46c..d49985a 100644 --- a/TIMBER/Tools/Plot.py +++ b/TIMBER/Tools/Plot.py @@ -15,14 +15,13 @@ def CompareShapes(outfilename,year,prettyvarname,bkgs={},signals={},names={},col Total background and signals are scaled to 1 if scale == True. Inputs organized as dicts so that keys can match across dicts (ex. bkgs and bkgNames). - Args: - outfilename (string): Path where plot will be saved. - prettyvarname (string): What will be assigned to as the axis title. - bkgs ({string:TH1}, optional): Dictionary of backgrounds to plot. Defaults to {}. - signals ({string:TH1}, optional): Dictionary of signals to plot. Defaults to {}. - names ({string:string}, optional): Formatted version of names for backgrounds and signals to appear in legend. Keys must match those in bkgs and signal. Defaults to {}. - colors ({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}. - scale (bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True. + @param outfilename (string): Path where plot will be saved. + @param prettyvarname (string): What will be assigned to as the axis title. + @param bkgs ({string:TH1}, optional): Dictionary of backgrounds to plot. Defaults to {}. + @param signals ({string:TH1}, optional): Dictionary of signals to plot. Defaults to {}. + @param names ({string:string}, optional): Formatted version of names for backgrounds and signals to appear in legend. Keys must match those in bkgs and signal. Defaults to {}. + @param colors ({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}. + @param scale (bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True. ''' # Initialize c = ROOT.TCanvas('c','c',800,700) @@ -121,21 +120,20 @@ def MoneyPlots(name, histlist, bkglist=[],signals=[],colors=[],titles=[],logy=Fa Providing multiple data histograms will plot the separate pads on a single canvas. Up to 6 pads are supported. See argument descriptions for plotting options. - Args: - name (str): Name of output file with extension (file type must be supported by TCanvas.Print()). - histlist ([TH1 or TH2]): List of data histograms. - bkglist ([[TH1]], optional): List of list of background histograms. Index of first list level matches + @param name (str): Name of output file with extension (file type must be supported by TCanvas.Print()). + @param histlist ([TH1 or TH2]): List of data histograms. + @param bkglist ([[TH1]], optional): List of list of background histograms. Index of first list level matches against index of histlist. Internal list is the group of backgrounds that will be stacked together to create the total background estimate. For example you could have: `histlist = [data1, data2]` and `bkglist = [[bkg1_1,bkg2_1],[bkg1_2,bkg2_2]]`. Defaults to []. - signals ([TH1], optional): List of signal histograms where index corresponds to the index of histlist. Defaults to []. - colors ([int], optional): List of integers corresponding to TColor codes where the index corresponds to the index of histlist. Defaults to []. - titles ([str], optional): List of titles for each histogram where the index corresponds to the index of histlist. Defaults to [] which means the input titles of histlist will be used. - logy (bool, optional): Option to plot log y-axis. Defaults to False. - xtitle (str, optional): X-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used. - ytitle (str, optional): Y-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used. - dataOff (bool, optional): If True, turns off data from being drawn in all pads. Defaults to False. - datastyle (str, optional): Style in which to draw data. Defaults to 'pe'. + @param signals ([TH1], optional): List of signal histograms where index corresponds to the index of histlist. Defaults to []. + @param colors ([int], optional): List of integers corresponding to TColor codes where the index corresponds to the index of histlist. Defaults to []. + @param titles ([str], optional): List of titles for each histogram where the index corresponds to the index of histlist. Defaults to [] which means the input titles of histlist will be used. + @param logy (bool, optional): Option to plot log y-axis. Defaults to False. + @param xtitle (str, optional): X-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used. + @param ytitle (str, optional): Y-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used. + @param dataOff (bool, optional): If True, turns off data from being drawn in all pads. Defaults to False. + @param datastyle (str, optional): Style in which to draw data. Defaults to 'pe'. Raises: ValueError: If number of requested pads is greater than 6. @@ -384,9 +382,8 @@ def MakePullPlot( data,bkg): '''Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature. - Args: - data (TH1): Histogram of data. - bkg (TH1): Histogram of total background. + @param data (TH1): Histogram of data. + @param bkg (TH1): Histogram of total background. Returns: TH1: Histogram of the pull. @@ -422,8 +419,7 @@ def MakeUpDown(hist): '''Creates up and down variations of a histogram based on its per-bin errors. - Args: - hist (TH1): Histogram from which to create up/down distributions. + @param hist (TH1): Histogram from which to create up/down distributions. Returns: (TH1, TH1): Tuple of (up, down) histograms. From b458aa20f420edf2c13d9ea9fdea233f7a4eecd6 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 17:52:08 -0400 Subject: [PATCH 12/17] Recompile documentation --- docs/_analyzer_8py.html | 166 +++++ docs/_common_8py.html | 661 ++++++++++++++++++ docs/_plot_8py.html | 363 ++++++++++ ...r_1_1_analyzer_1_1_correction-members.html | 8 +- ...i_m_b_e_r_1_1_analyzer_1_1_correction.html | 142 ++-- ..._r_1_1_analyzer_1_1_cut_group-members.html | 17 +- ..._i_m_b_e_r_1_1_analyzer_1_1_cut_group.html | 47 +- ..._b_e_r_1_1_analyzer_1_1_group-members.html | 17 +- ...ss_t_i_m_b_e_r_1_1_analyzer_1_1_group.html | 168 ++++- ...r_1_1_analyzer_1_1_hist_group-members.html | 19 +- ...i_m_b_e_r_1_1_analyzer_1_1_hist_group.html | 56 +- ...m_b_e_r_1_1_analyzer_1_1_node-members.html | 10 +- ...ass_t_i_m_b_e_r_1_1_analyzer_1_1_node.html | 123 ++-- ..._r_1_1_analyzer_1_1_var_group-members.html | 17 +- ..._i_m_b_e_r_1_1_analyzer_1_1_var_group.html | 47 +- ..._e_r_1_1_analyzer_1_1analyzer-members.html | 55 +- ..._t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html | 236 ++++--- ...__t_i_m_b_e_r__framework__r_e_a_d_m_e.html | 2 +- docs/search/all_0.js | 3 +- docs/search/all_1.js | 6 +- docs/search/all_10.js | 2 +- docs/search/all_12.html | 26 + docs/search/all_12.js | 6 + docs/search/all_13.html | 26 + docs/search/all_13.js | 5 + docs/search/all_3.js | 4 +- docs/search/all_4.js | 4 +- docs/search/all_6.js | 2 + docs/search/all_c.js | 2 +- docs/search/all_d.js | 2 +- docs/search/files_0.html | 26 + docs/search/files_0.js | 4 + docs/search/files_1.html | 26 + docs/search/files_1.js | 4 + docs/search/files_2.html | 26 + docs/search/files_2.js | 4 + docs/search/functions_0.js | 3 +- docs/search/functions_1.js | 4 +- docs/search/functions_2.js | 3 +- docs/search/functions_3.js | 2 +- docs/search/functions_5.js | 2 + docs/search/functions_7.js | 2 +- docs/search/functions_d.html | 26 + docs/search/functions_d.js | 8 + docs/search/functions_e.html | 26 + docs/search/functions_e.js | 4 + docs/search/functions_f.html | 26 + docs/search/functions_f.js | 4 + docs/search/searchdata.js | 2 +- docs/search/variables_0.js | 4 +- docs/search/variables_2.js | 1 + docs/search/variables_3.js | 2 +- docs/search/variables_4.js | 3 +- docs/search/variables_5.js | 3 +- docs/search/variables_6.js | 2 +- docs/search/variables_7.js | 2 +- docs/search/variables_8.js | 2 +- docs/search/variables_9.js | 2 +- 58 files changed, 2063 insertions(+), 402 deletions(-) create mode 100644 docs/_analyzer_8py.html create mode 100644 docs/_common_8py.html create mode 100644 docs/_plot_8py.html create mode 100644 docs/search/all_12.html create mode 100644 docs/search/all_12.js create mode 100644 docs/search/all_13.html create mode 100644 docs/search/all_13.js create mode 100644 docs/search/files_0.html create mode 100644 docs/search/files_0.js create mode 100644 docs/search/files_1.html create mode 100644 docs/search/files_1.js create mode 100644 docs/search/files_2.html create mode 100644 docs/search/files_2.js create mode 100644 docs/search/functions_d.html create mode 100644 docs/search/functions_d.js create mode 100644 docs/search/functions_e.html create mode 100644 docs/search/functions_e.js create mode 100644 docs/search/functions_f.html create mode 100644 docs/search/functions_f.js diff --git a/docs/_analyzer_8py.html b/docs/_analyzer_8py.html new file mode 100644 index 0000000..a4369ab --- /dev/null +++ b/docs/_analyzer_8py.html @@ -0,0 +1,166 @@ + + + + + + + +TIMBER: TIMBER/Analyzer.py File Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+Classes | +Functions | +Variables
+
+
Analyzer.py File Reference
+
+
+ +

Home of main classes for TIMBER. +More...

+ + + + + + + + + + + + + + + + + + + + + + + +

+Classes

class  TIMBER.Analyzer.analyzer
 Main class for TIMBER. More...
 
class  TIMBER.Analyzer.Node
 Class to represent nodes in the DataFrame processing graph. More...
 
class  TIMBER.Analyzer.Group
 Organizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items. More...
 
class  TIMBER.Analyzer.CutGroup
 Stores Cut actions. More...
 
class  TIMBER.Analyzer.VarGroup
 Stores Define actions. More...
 
class  TIMBER.Analyzer.HistGroup
 Stores histograms with dedicated function to use TH1/2/3 methods in a batch. More...
 
class  TIMBER.Analyzer.Correction
 Correction class to handle corrections produced by C++ modules. More...
 
+ + + + +

+Functions

def TIMBER.Analyzer.LoadColumnNames (source='')
 Loads column names from a text file. More...
 
+ + + + + + + + + + + +

+Variables

+ TIMBER.Analyzer.pp = pprint.PrettyPrinter(indent=4)
 
+ TIMBER.Analyzer.libs = subprocess.Popen('$ROOTSYS/bin/root-config --libs',shell=True, stdout=subprocess.PIPE).communicate()[0].strip()
 
+ TIMBER.Analyzer.rootpath = subprocess.Popen('echo $ROOTSYS',shell=True, stdout=subprocess.PIPE).communicate()[0].strip()
 
+string TIMBER.Analyzer.cpp_args = '-x c++ -c --std=c++11 -I %s/include %s -lstdc++'%(rootpath,libs)
 
+ TIMBER.Analyzer.TIMBERPATH = os.environ["TIMBERPATH"]
 
+

Detailed Description

+

Home of main classes for TIMBER.

+

Function Documentation

+ +

◆ LoadColumnNames()

+ +
+
+ + + + + + + + +
def TIMBER.Analyzer.LoadColumnNames ( source = '')
+
+ +

Loads column names from a text file.

+
Parameters
+ + +
source(str, optional): File location if default TIMBER/data/NanoAODv6_cols.txt is not to be used. Defaults to ''.
+
+
+
Returns
[str]: List of all column names.
+ +
+
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/_common_8py.html b/docs/_common_8py.html new file mode 100644 index 0000000..ec83765 --- /dev/null +++ b/docs/_common_8py.html @@ -0,0 +1,661 @@ + + + + + + + +TIMBER: TIMBER/Tools/Common.py File Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+Functions
+
+
Common.py File Reference
+
+
+ +

Home to commonly used tools available for use that can be generic or TIMBER specific. +More...

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+Functions

def TIMBER.Tools.Common.CutflowHist (name, node, efficiency=False)
 TIMBER specific #. More...
 
def TIMBER.Tools.Common.CutflowTxt (name, node, efficiency=False)
 Writes out the cutflow as a text file using the report feature of RDF. More...
 
def TIMBER.Tools.Common.StitchQCD (QCDdict, normDict=None)
 Stitches together histograms in QCD hist groups. More...
 
def TIMBER.Tools.Common.CompileCpp (blockcode, library=False)
 Generic #. More...
 
def TIMBER.Tools.Common.OpenJSON (filename)
 Opens JSON file as a dictionary (accounting for unicode encoding) More...
 
def TIMBER.Tools.Common.AsciiEncodeDict (data)
 Encodes dict to ascii from unicode. More...
 
def TIMBER.Tools.Common.ConcatCols (self, colnames, val='1', connector='&&')
 Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator). More...
 
+def TIMBER.Tools.Common.GetHistBinningTuple (h)
 
def TIMBER.Tools.Common.ColliMate (myString, width=18)
 Collimates strings to have consistent spacing between first character of word i with the first character of word i+1 and i-1. More...
 
def TIMBER.Tools.Common.DictStructureCopy (inDict)
 Recursively copies the structure of a dictionary with non-dict items replaced with 0. More...
 
def TIMBER.Tools.Common.DictCopy (inDict)
 Recursively copy dictionary structure and values. More...
 
def TIMBER.Tools.Common.ExecuteCmd (cmd, dryrun=False)
 Executes shell command via subprocess.call() and prints the command for posterity. More...
 
def TIMBER.Tools.Common.DictToLatexTable (dict2convert, outfilename, roworder=[], columnorder=[])
 Converts a dictionary with two layers (ie. More...
 
def TIMBER.Tools.Common.FindCommonString (string_list)
 Finds a common string between a list of strings. More...
 
def TIMBER.Tools.Common.cd (newdir)
 Context manager to cd to another folder in the middle of a python script. More...
 
+

Detailed Description

+

Home to commonly used tools available for use that can be generic or TIMBER specific.

+

Function Documentation

+ +

◆ AsciiEncodeDict()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.AsciiEncodeDict ( data)
+
+ +

Encodes dict to ascii from unicode.

+

Credit Andrew Clark on StackOverflow.

+
Parameters
+ + +
data(dict): Input dictionary.
+
+
+
Returns
+
+dict New dictionary with unicode converted to ascii.
+ +
+
+ +

◆ cd()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.cd ( newdir)
+
+ +

Context manager to cd to another folder in the middle of a python script.

+

Useful to use if you're producing a lot of files in a dedicated folder. Change into the folder and then produce the files.

+
Parameters
+ + +
newdir(str): Directory to cd into.
+
+
+ +
+
+ +

◆ ColliMate()

+ +
+
+ + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.ColliMate ( myString,
 width = 18 
)
+
+ +

Collimates strings to have consistent spacing between first character of word i with the first character of word i+1 and i-1.

+

Recommended instead to use format() method of python strings as described here.

+
Parameters
+ + + +
myString(str): String to space (words only separated by single space).
width(int, optional): Column widths. Defaults to 18.
+
+
+
Returns
+
+str String with new spacing between words.
+ +
+
+ +

◆ CompileCpp()

+ +
+
+ + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.CompileCpp ( blockcode,
 library = False 
)
+
+ +

Generic #.

+

Compiles C++ code via the gInterpreter. 

A python string (the actual code) can be passed or a file name
+(the file will be opened and read). If a file is passed,
+the C++ code can be compiled
+as a library and if in the future the C++ script is older than the library,
+then the library will be loaded instead.
+
+@param blockcode (str): Either a block of C++ code or a file name to open.
+@param library (bool, optional): Compiles a library which can be later loaded
+        to avoid compilation time. Defaults to False.
+
+
+ +

◆ ConcatCols()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.ConcatCols ( self,
 colnames,
 val = '1',
 connector = '&&' 
)
+
+ +

Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator).

+
Parameters
+ + + + +
colnames([str]): List of column names.
val(str): Value to test equality of all columns. Defaults to '1'.
connector(str): C++ boolean logic operator between column equality checks. Defaults to '&&'.
+
+
+
Returns
+
+str Concatenated string of the entire evaluation that in C++ will return a bool.
+ +
+
+ +

◆ CutflowHist()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.CutflowHist ( name,
 node,
 efficiency = False 
)
+
+ +

TIMBER specific #.

+

Draws a cutflow histogram using the report feature of RDF. 

@param name (str): Name of output histogram
+@param node (Node): Input Node from which to get the cutflow.
+@param efficiency (bool, optional): Reports an efficiency instead of yields
+        (relative to number of events before any cuts on Node).
+
Returns
+
+TH1 Histogram with each bin showing yield (or efficiency) for progressive cuts.
+ +
+
+ +

◆ CutflowTxt()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.CutflowTxt ( name,
 node,
 efficiency = False 
)
+
+ +

Writes out the cutflow as a text file using the report feature of RDF.

+
Parameters
+ + + + +
name(str): Name of output text file.
node(Node): Input Node from which to get the cutflow.
efficiency(bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node).
+
+
+
Returns
+
+None
+ +
+
+ +

◆ DictCopy()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.DictCopy ( inDict)
+
+ +

Recursively copy dictionary structure and values.

+
Parameters
+ + +
inDict(dict): Dictionary to copy.
+
+
+
Returns
+
+dict Output copy.
+ +
+
+ +

◆ DictStructureCopy()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.DictStructureCopy ( inDict)
+
+ +

Recursively copies the structure of a dictionary with non-dict items replaced with 0.

+
Parameters
+ + +
inDict(dict): Dictionary with structure to copy.
+
+
+
Returns
+
+dict Output dict.
+ +
+
+ +

◆ DictToLatexTable()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.DictToLatexTable ( dict2convert,
 outfilename,
 roworder = [],
 columnorder = [] 
)
+
+ +

Converts a dictionary with two layers (ie.

+

only one set of sub-keys) to a LaTeX table. First set of keys (ie. external) are rows, second (ie. internal) are columns. If the column entry for a given row is not provided (ie. missing key), then '-' is substituted.

+
Parameters
+ + + + + +
dict2convert(dict): Input dictionary.
outfilename(str): Output .tex file name.
roworder(list, optional): Custom ordering of rows. Defaults to [] in which case the sorted keys are used.
columnorder(list, optional): Custom ordering of columns. Defaults to [] in which case the sorted keys are used.
+
+
+ +
+
+ +

◆ ExecuteCmd()

+ +
+
+ + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.ExecuteCmd ( cmd,
 dryrun = False 
)
+
+ +

Executes shell command via subprocess.call() and prints the command for posterity.

+
Parameters
+ + + +
cmd(str): Shell command to run.
dryrun(bool, optional): Prints command but doesn't execute it. Defaults to False.
+
+
+ +
+
+ +

◆ FindCommonString()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.FindCommonString ( string_list)
+
+ +

Finds a common string between a list of strings.

+
Parameters
+ + +
string_list([str]): List of strings to compare.
+
+
+
Returns
+
+str Matched sub-string.
+ +
+
+ +

◆ OpenJSON()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Common.OpenJSON ( filename)
+
+ +

Opens JSON file as a dictionary (accounting for unicode encoding)

+
Parameters
+ + +
filename(str): JSON file name to open.
+
+
+
Returns
+
+dict Python dictionary with JSON content.
+ +
+
+ +

◆ StitchQCD()

+ +
+
+ + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Common.StitchQCD ( QCDdict,
 normDict = None 
)
+
+ +

Stitches together histograms in QCD hist groups.

+
Parameters
+ + + +
QCDdict({string:HistGroup}): Dictionary of HistGroup objects
normDict({string:float}): Factors to normalize each sample to where keys must match QCDdict keys. Default to None and assume normalization has already been done.
+
+
+
Returns
+
+HistGroup New HistGroup with histograms in group being the final stitched versions
+ +
+
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/_plot_8py.html b/docs/_plot_8py.html new file mode 100644 index 0000000..b6cbfe6 --- /dev/null +++ b/docs/_plot_8py.html @@ -0,0 +1,363 @@ + + + + + + + +TIMBER: TIMBER/Tools/Plot.py File Reference + + + + + + + + + + +
+
+ + + + + + +
+
TIMBER +  beta +
+
Tree Interface for Making Binned Events with RDataFrame
+
+
+ + + + + + + + +
+
+ + +
+ +
+ + +
+
+
+Functions
+
+
Plot.py File Reference
+
+
+ +

Functions to easily plot histograms together in various configurations. +More...

+ + + + + + + + + + + + + + +

+Functions

def TIMBER.Tools.Plot.CompareShapes (outfilename, year, prettyvarname, bkgs={}, signals={}, names={}, colors={}, scale=True, stackBkg=False)
 Create a plot that compares the shapes of backgrounds versus signal. More...
 
def TIMBER.Tools.Plot.MoneyPlots (name, histlist, bkglist=[], signals=[], colors=[], titles=[], logy=False, xtitle='', ytitle='', dataOff=False, datastyle='pe')
 Tool to produce plots quickly as .root, .pdf, .png, etc. More...
 
def TIMBER.Tools.Plot.MakePullPlot (data, bkg)
 Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature. More...
 
def TIMBER.Tools.Plot.MakeUpDown (hist)
 Creates up and down variations of a histogram based on its per-bin errors. More...
 
+

Detailed Description

+

Functions to easily plot histograms together in various configurations.

+

Function Documentation

+ +

◆ CompareShapes()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Plot.CompareShapes ( outfilename,
 year,
 prettyvarname,
 bkgs = {},
 signals = {},
 names = {},
 colors = {},
 scale = True,
 stackBkg = False 
)
+
+ +

Create a plot that compares the shapes of backgrounds versus signal.

+

Backgrounds will be stacked together and signals will be plot separately. Total background and signals are scaled to 1 if scale == True. Inputs organized as dicts so that keys can match across dicts (ex. bkgs and bkgNames).

+
Parameters
+ + + + + + + + +
outfilename(string): Path where plot will be saved.
prettyvarname(string): What will be assigned to as the axis title.
bkgs({string:TH1}, optional): Dictionary of backgrounds to plot. Defaults to {}.
signals({string:TH1}, optional): Dictionary of signals to plot. Defaults to {}.
names({string:string}, optional): Formatted version of names for backgrounds and signals to appear in legend. Keys must match those in bkgs and signal. Defaults to {}.
colors({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}.
scale(bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True.
+
+
+ +
+
+ +

◆ MakePullPlot()

+ +
+
+ + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Plot.MakePullPlot ( data,
 bkg 
)
+
+ +

Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature.

+
Parameters
+ + + +
data(TH1): Histogram of data.
bkg(TH1): Histogram of total background.
+
+
+
Returns
+
+TH1 Histogram of the pull.
+ +
+
+ +

◆ MakeUpDown()

+ +
+
+ + + + + + + + +
def TIMBER.Tools.Plot.MakeUpDown ( hist)
+
+ +

Creates up and down variations of a histogram based on its per-bin errors.

+
Parameters
+ + +
hist(TH1): Histogram from which to create up/down distributions.
+
+
+
Returns
(TH1, TH1): Tuple of (up, down) histograms.
+ +
+
+ +

◆ MoneyPlots()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
def TIMBER.Tools.Plot.MoneyPlots ( name,
 histlist,
 bkglist = [],
 signals = [],
 colors = [],
 titles = [],
 logy = False,
 xtitle = '',
 ytitle = '',
 dataOff = False,
 datastyle = 'pe' 
)
+
+ +

Tool to produce plots quickly as .root, .pdf, .png, etc.

+

If providing TH2s, only plots the data (histlist) with no comparisons. If providing TH1s, plots together the data (histlist), total background (individual components as a stack), and signals with pulls in a lower pane. Providing multiple data histograms will plot the separate pads on a single canvas. Up to 6 pads are supported. See argument descriptions for plotting options.

+
Parameters
+ + + + + + + + + + + + +
name(str): Name of output file with extension (file type must be supported by TCanvas.Print()).
histlist([TH1 or TH2]): List of data histograms.
bkglist([[TH1]], optional): List of list of background histograms. Index of first list level matches against index of histlist. Internal list is the group of backgrounds that will be stacked together to create the total background estimate. For example you could have: histlist = [data1, data2] and bkglist = [[bkg1_1,bkg2_1],[bkg1_2,bkg2_2]]. Defaults to [].
signals([TH1], optional): List of signal histograms where index corresponds to the index of histlist. Defaults to [].
colors([int], optional): List of integers corresponding to TColor codes where the index corresponds to the index of histlist. Defaults to [].
titles([str], optional): List of titles for each histogram where the index corresponds to the index of histlist. Defaults to [] which means the input titles of histlist will be used.
logy(bool, optional): Option to plot log y-axis. Defaults to False.
xtitle(str, optional): X-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used.
ytitle(str, optional): Y-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used.
dataOff(bool, optional): If True, turns off data from being drawn in all pads. Defaults to False.
datastyle(str, optional): Style in which to draw data. Defaults to 'pe'.
+
+
+
Exceptions
+ + +
ValueErrorIf number of requested pads is greater than 6.
+
+
+ +
+
+
+ +
+Generated by   +doxygen + 1.8.13 +
+ + diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html index c903e88..4b8a77f 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html @@ -72,13 +72,13 @@

This is the complete list of members for TIMBER.Analyzer.Correction, including all inherited members.

- - - + + + - +
__init__(self, name, script, constructor=[], mainFunc='eval', corrtype=None, columnList=None, isClone=False, existingObject=None)TIMBER.Analyzer.Correction
Clone(self, name, newMainFunc=None, cpObj=False)TIMBER.Analyzer.Correction
GetCall(self) (defined in TIMBER.Analyzer.Correction)TIMBER.Analyzer.Correction
__init__(self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)TIMBER.Analyzer.Correction
Clone(self, name, newMainFunc=None)TIMBER.Analyzer.Correction
GetCall(self, inArgs=[])TIMBER.Analyzer.Correction
GetFuncNames(self)TIMBER.Analyzer.Correction
GetMainFunc(self)TIMBER.Analyzer.Correction
GetType(self)TIMBER.Analyzer.Correction
MakeCall(self, inArgs)TIMBER.Analyzer.Correction
MakeCall(self, inArgs=[])TIMBER.Analyzer.Correction
nameTIMBER.Analyzer.Correction
diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html index 428170e..dea9945 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html @@ -89,18 +89,18 @@ - - - - - - - - - - - + + + + + + + + + + + + @@ -122,11 +122,11 @@

Correction class to handle corrections produced by C++ modules.

Uses clang in python to parse the C++ code and determine function names, namespaces, and argument names and types.

Writing the C++ modules has two requirements:

-

(1) the desired branch/column names must be used as the argument variable names to allow the framework to automatically determine what branch/column to use in GetCall(),

+

(1) the desired branch/column names must be used as the argument variable names to allow the framework to automatically determine what branch/column to use in GetCall(),

(2) the return must be a vector ordered as <nominal, up, down> for "weight" type and <up, down> for "uncert" type.

Constructor & Destructor Documentation

- -

◆ __init__()

+ +

◆ __init__()

@@ -165,7 +165,7 @@

- + @@ -177,13 +177,7 @@

- - - - - - - + @@ -196,12 +190,13 @@

Parameters

Public Member Functions

def __init__ (self, name, script, constructor=[], mainFunc='eval', corrtype=None, columnList=None, isClone=False, existingObject=None)
 Constructor. More...
 
def Clone (self, name, newMainFunc=None, cpObj=False)
 Makes a clone of current instance. More...
 
def MakeCall (self, inArgs)
 Return the call to the function with the branch/column names deduced or added from input. More...
 
-def GetCall (self)
 
def __init__ (self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)
 Constructor. More...
 
def Clone (self, name, newMainFunc=None)
 Makes a clone of current instance. More...
 
def MakeCall (self, inArgs=[])
 Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input. More...
 
def GetCall (self, inArgs=[])
 Gets the call to the method to be evaluated per-event. More...
 
def GetMainFunc (self)
 Gets full main function name. More...
 
 corrtype = None, corrtype = '',
 isClone = False,
 existingObject = None isClone = False 
- - - - - - + + + + + + +
nameCorrection name.
scriptPath to C++ script with function to calculate correction.
constructorArguments to script class constructor.
mainFuncName of the function to use inside script. Defaults to None and the class will try to deduce it.
corrtype"weight" (nominal weight to apply with an uncertainty) or "uncert" (only an uncertainty). Defaults to None and the class will try to deduce it.
isCloneFor internal use when cloning. Defaults to False.
name(str): Correction name.
script(str): Path to C++ script with function to calculate correction.
constructor([str], optional): List of arguments to script class constructor. Defaults to [].
mainFunc(str, optional): Name of the function to use inside script. Defaults to None and the class will try to deduce it.
corrtype(str, optional): Either "weight" (nominal weight to apply with an uncertainty) or "uncert" (only an uncertainty). Defaults to '' and the class will try to deduce it.
columnList([str], optional): List of column names to search mainFunc arguments against. Defaults to None and the standard NanoAOD columns from LoadColumnNames() will be used.
isClone(bool, optional): For internal use when cloning. Defaults to False. If True, will not duplicately recompile the same script if two functions are needed in one C++ script.
@@ -209,8 +204,8 @@

Member Function Documentation

- -

◆ Clone()

+ +

◆ Clone()

@@ -231,13 +226,48 @@

 newMainFunc = None, newMainFunc = None 
)
+
+ +

Makes a clone of current instance.

+

If multiple functions are in the same script, one can clone the correction and reassign the mainFunc to avoid compiling the same script twice.

+
Parameters
+ + + +
name(str): Clone name.
newMainFunc(str, optional): Name of the function to use inside script. Defaults to None and the original is used.
+
+
+
Returns
+
+Correction Clone of instance with same script but different function (newMainFunc).
+ +
+ + +

◆ GetCall()

+ +
+
+ + + + + + - + @@ -247,16 +277,16 @@

-

Makes a clone of current instance.

-

If multiple functions are in the same script, one can clone the correction and reassign the mainFunc to avoid compiling the same script twice.

+

Gets the call to the method to be evaluated per-event.

Parameters

def TIMBER.Analyzer.Correction.GetCall ( self,
 cpObj = False inArgs = [] 
- - +
nameClone name.
newMainFuncName of the function to use inside script. Defaults to same as original.
inArgs(list, optional): Args to use for eval if MakeCall() has not already been called. Defaults to []. If MakeCall() has not already been called and inArgs == [], then the arguments to the method will be deduced from the C++ method definition argument names.
-
Returns
Clone of instance with same script but different function (newMainFunc)
+
Returns
+
+str The string that calls the method to evaluate per-event. Pass to Analyzer.Define(), Analyzer.Cut(), etc.
@@ -277,7 +307,7 @@

Gets list of function names in C++ script.

-
Returns
List of possible function names.
+
Returns
[str]: List of possible function names found in C++ script.
@@ -298,7 +328,9 @@

Gets full main function name.

-
Returns
Name of function assigned from C++ script.
+
Returns
+
+str Name of function assigned from C++ script.
@@ -319,12 +351,14 @@

Gets Correction type.

-
Returns
Correction type.
+
Returns
+
+str Correction type.
- -

◆ MakeCall()

+ +

◆ MakeCall()

@@ -339,7 +373,7 @@

  - inArgs  + inArgs = []  @@ -349,10 +383,22 @@

-

Return the call to the function with the branch/column names deduced or added from input.

-
Returns
-
-inArgs List of arguments (NanoAOD branch names) to provide to per-event evaluation method. String of call to function from C++ script.
+

Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input.

+
Parameters
+ + +
inArgs(list, optional): List of arguments (branch/column names) to provide to per-event evaluation method. Defaults to [] in which case the arguements are deduced from what is written in the C++ script.
+
+
+
Exceptions
+ + + + + +
NameErrorIf argument written in C++ script cannot be found in available columns.
ValueErrorIf provided number of arguments does not match the number in the method.
Returns
strCall to function from C++ script.
+
+

diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html index 9031aa7..7ec6ce9 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html @@ -75,14 +75,15 @@ __add__(self, other)TIMBER.Analyzer.Group __getitem__(self, key)TIMBER.Analyzer.Group __init__(self, name)TIMBER.Analyzer.CutGroup - __setitem__(self, key, value) (defined in TIMBER.Analyzer.Group)TIMBER.Analyzer.Group - Add(self, name, item)TIMBER.Analyzer.Group - Drop(self, name)TIMBER.Analyzer.Group - itemsTIMBER.Analyzer.Group - keys(self)TIMBER.Analyzer.Group - nameTIMBER.Analyzer.Group - typeTIMBER.Analyzer.CutGroup - values(self)TIMBER.Analyzer.Group + __setitem__(self, key, value)TIMBER.Analyzer.Group + Add(self, name, item, copy=False)TIMBER.Analyzer.Group + Clone(self, name)TIMBER.Analyzer.Group + Drop(self, name, copy=False)TIMBER.Analyzer.Group + itemsTIMBER.Analyzer.Group + keys(self)TIMBER.Analyzer.Group + nameTIMBER.Analyzer.Group + type (defined in TIMBER.Analyzer.CutGroup)TIMBER.Analyzer.CutGroup + values(self)TIMBER.Analyzer.Group
diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html index 9f32eb9..e2390e7 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html @@ -96,17 +96,21 @@

Public Member Functions

def __init__ (self, name) + Constructor. More...
  - Public Member Functions inherited from TIMBER.Analyzer.Group def __init__ (self, name)  Constructor. More...
  -def Add (self, name, item) - Add item to Group with a name. More...
-  -def Drop (self, name) - Drop item from Group with provided name/key. More...
-  +def Add (self, name, item, copy=False) + Add item to Group with a name. More...
+  +def Drop (self, name, copy=False) + Drop item from Group with provided name/key. More...
+  +def Clone (self, name) + Clone the current group with a new name. More...
+  def __add__ (self, other)  Adds two Groups together. More...
  @@ -116,16 +120,17 @@ def values (self)  Gets list of values from Group. More...
  - -def __setitem__ (self, key, value) +def __setitem__ (self, key, value) + Set key-value pair as you would with dictionary. More...
  def __getitem__ (self, key) + Get value from key as you would with dictionary. More...
  - - + @@ -166,31 +171,15 @@

+ +

Constructor.

Parameters

Public Attributes

 type
 string More...
+ type
 
- Public Attributes inherited from TIMBER.Analyzer.Group
 name
- +
nameName (string) for instance.
name(str): Name for instance.
- - -

Member Data Documentation

- -

◆ type

- -
-
- - - - -
TIMBER.Analyzer.CutGroup.type
-
- -

string

-

Group type - "cut", "var", "hist"

-
The documentation for this class was generated from the following file:
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html index 99b54dc..6e08320 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html @@ -75,14 +75,15 @@ __add__(self, other)TIMBER.Analyzer.Group __getitem__(self, key)TIMBER.Analyzer.Group __init__(self, name)TIMBER.Analyzer.Group - __setitem__(self, key, value) (defined in TIMBER.Analyzer.Group)TIMBER.Analyzer.Group - Add(self, name, item)TIMBER.Analyzer.Group - Drop(self, name)TIMBER.Analyzer.Group - itemsTIMBER.Analyzer.Group - keys(self)TIMBER.Analyzer.Group - nameTIMBER.Analyzer.Group - typeTIMBER.Analyzer.Group - values(self)TIMBER.Analyzer.Group + __setitem__(self, key, value)TIMBER.Analyzer.Group + Add(self, name, item, copy=False)TIMBER.Analyzer.Group + Clone(self, name)TIMBER.Analyzer.Group + Drop(self, name, copy=False)TIMBER.Analyzer.Group + itemsTIMBER.Analyzer.Group + keys(self)TIMBER.Analyzer.Group + nameTIMBER.Analyzer.Group + typeTIMBER.Analyzer.Group + values(self)TIMBER.Analyzer.Group
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html index 4342576..cd9e766 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html @@ -97,12 +97,15 @@ def __init__ (self, name)  Constructor. More...
      -def Add (self, name, item) - Add item to Group with a name. More...
    -  -def Drop (self, name) - Drop item from Group with provided name/key. More...
    -  +def Add (self, name, item, copy=False) + Add item to Group with a name. More...
    +  +def Drop (self, name, copy=False) + Drop item from Group with provided name/key. More...
    +  +def Clone (self, name) + Clone the current group with a new name. More...
    +  def __add__ (self, other)  Adds two Groups together. More...
      @@ -112,10 +115,11 @@ def values (self)  Gets list of values from Group. More...
      - -def __setitem__ (self, key, value) +def __setitem__ (self, key, value) + Set key-value pair as you would with dictionary. More...
      def __getitem__ (self, key) + Get value from key as you would with dictionary. More...
      - - - - - - - - - + + + + + + + + + +

    @@ -160,12 +164,7 @@

    Constructor.

    -
    Parameters
    - - -
    nameName (string) for instance.
    -
    -
    +

    name Name for instance.

    @@ -197,13 +196,16 @@

    Adds two Groups together.

    +

    Items in other override duplicates. If groups do not have matching type, a generic Group will be returned. Ex. newgroup = group1 + group2

    Parameters
    - +
    otherGroup to add to current Group.
    other(Group): Group to add to current Group.
    -
    Returns
    Addition of the two groups.
    +
    Returns
    +
    +Group Addition of the two groups (will be VarGroup, CutGroup, or HistGroup if applicable).
    @@ -232,24 +234,29 @@

    + +

    Get value from key as you would with dictionary.

    +

    Ex. val = mygroup["item_name"]

    Parameters
    - +
    keyKey for name/key in Group.
    key(obj): Key for name/key in Group.
    -
    Returns
    Item for given key.
    +
    Returns
    +
    +obj Item for given key.
    -     -

    ◆ Add()

    + +

    ◆ __setitem__()

    - + @@ -258,13 +265,13 @@

    - + - + @@ -274,28 +281,73 @@

    -

    Add item to Group with a name.

    +

    Set key-value pair as you would with dictionary.

    +

    Ex. mygroup["item_name"] = new_value

    Parameters

    def TIMBER.Analyzer.Group.Add def TIMBER.Analyzer.Group.__setitem__ (   self,  name, key,
     item value 
    - - + +
    nameName/key (string) for added item.
    itemItem to add.
    key(obj): Key for value.
    value(obj): Value to store.
    -
    Returns
    + +
    +
    + +

    ◆ Add()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Group.Add ( self,
     name,
     item,
     copy = False 
    )
    +
    + +

    Add item to Group with a name.

    +

    Modifies in-place. 

       @param name (str): Name/key for added item.
+   @param item (obj): Item to add.
+
    Returns
    None
    - -

    ◆ Drop()

    + +

    ◆ Clone()

    - + @@ -314,14 +366,56 @@

    -

    Drop item from Group with provided name/key.

    +

    Clone the current group with a new name.

    Parameters

    def TIMBER.Analyzer.Group.Drop def TIMBER.Analyzer.Group.Clone (   self,
    - +
    nameName/key (string) for dropped item.
    name(str): Name for clone.
    -
    Returns
    New group with item dropped.
    +
    Returns
    +
    +Group Group clone (will be VarGroup, CutGroup, or HistGroup if applicable).
    + +
    +
    + +

    ◆ Drop()

    + +
    +
    + + + + + + + + + + + + + + + + + + + + + + + + +
    def TIMBER.Analyzer.Group.Drop ( self,
     name,
     copy = False 
    )
    +
    + +

    Drop item from Group with provided name/key.

    +

    Modifies in-place. 

       @param name (str): Name/key for dropped item.
+
    Returns
    +
    +None
    @@ -342,7 +436,9 @@

    Gets list of keys from Group.

    -
    Returns
    Names/keys from Group.
    +
    Returns
    +
    +list Names/keys from Group.
    @@ -363,7 +459,9 @@

    Gets list of values from Group.

    -
    Returns
    Values from Group.
    +
    Returns
    +
    +list Values from Group.
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html index bdc909b..f4ec488 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html @@ -75,15 +75,16 @@

    __add__(self, other)TIMBER.Analyzer.Group
    __getitem__(self, key)TIMBER.Analyzer.Group
    __init__(self, name)TIMBER.Analyzer.HistGroup
    __setitem__(self, key, value) (defined in TIMBER.Analyzer.Group)TIMBER.Analyzer.Group
    Add(self, name, item)TIMBER.Analyzer.Group
    Do(self, THmethod, argsTuple=())TIMBER.Analyzer.HistGroup
    Drop(self, name)TIMBER.Analyzer.Group
    itemsTIMBER.Analyzer.Group
    keys(self)TIMBER.Analyzer.Group
    nameTIMBER.Analyzer.Group
    typeTIMBER.Analyzer.HistGroup
    values(self)TIMBER.Analyzer.Group
    __setitem__(self, key, value)TIMBER.Analyzer.Group
    Add(self, name, item, copy=False)TIMBER.Analyzer.Group
    Clone(self, name)TIMBER.Analyzer.Group
    Do(self, THmethod, argsTuple=())TIMBER.Analyzer.HistGroup
    Drop(self, name, copy=False)TIMBER.Analyzer.Group
    itemsTIMBER.Analyzer.Group
    keys(self)TIMBER.Analyzer.Group
    nameTIMBER.Analyzer.Group
    type (defined in TIMBER.Analyzer.HistGroup)TIMBER.Analyzer.HistGroup
    values(self)TIMBER.Analyzer.Group
    diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html index 6e94ae0..89f5f05 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html @@ -96,6 +96,7 @@

    Public Member Functions

    def __init__ (self, name) + Constructor. More...
      def Do (self, THmethod, argsTuple=())  Batch act on histograms using ROOT TH1/2/3 methods. More...
    @@ -104,12 +105,15 @@ def __init__ (self, name)  Constructor. More...
      -def Add (self, name, item) - Add item to Group with a name. More...
    -  -def Drop (self, name) - Drop item from Group with provided name/key. More...
    -  +def Add (self, name, item, copy=False) + Add item to Group with a name. More...
    +  +def Drop (self, name, copy=False) + Drop item from Group with provided name/key. More...
    +  +def Clone (self, name) + Clone the current group with a new name. More...
    +  def __add__ (self, other)  Adds two Groups together. More...
      @@ -119,16 +123,17 @@ def values (self)  Gets list of values from Group. More...
      - -def __setitem__ (self, key, value) +def __setitem__ (self, key, value) + Set key-value pair as you would with dictionary. More...
      def __getitem__ (self, key) + Get value from key as you would with dictionary. More...
      - - + @@ -169,9 +174,11 @@

    + +

    Constructor.

    Parameters

    Public Attributes

     type
     string More...
    + type
     
    - Public Attributes inherited from TIMBER.Analyzer.Group
     name
    - +
    nameName (string) for instance.
    name(str): Name for instance.
    @@ -214,32 +221,13 @@

    Parameters
    - - + +
    THmethodString of the ROOT TH1/2/3 method to use.
    argsTupleTuple of arguments to pass to THmethod.
    THmethod(str): String of the ROOT TH1/2/3 method to use.
    argsTuple(tuple): Tuple of arguments to pass to THmethod.
    -
    Returns
    New HistGroup with THmethod applied if THmethod does not return None. Else None.
    -
    Example
    To scale all histograms by 0.5 myHistGroup.Do("Scale",(0.5))
    - - - -

    Member Data Documentation

    - -

    ◆ type

    - -
    -
    - - - - -
    TIMBER.Analyzer.HistGroup.type
    -
    - -

    string

    -

    Group type - "cut", "var", "hist"

    - +
    Returns
    HistGroup or None: New HistGroup with THmethod applied if THmethod does not return None; else None.
    +

    Examples

    To scale all histograms by 0.5

    myHistGroup.Do("Scale",(0.5))
    The documentation for this class was generated from the following file:
      diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html index c5a9582..8b6c6bd 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node-members.html @@ -73,15 +73,15 @@

      This is the complete list of members for TIMBER.Analyzer.Node, including all inherited members.

      - - - + + + - + - + diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html index 196aa10..22c054a 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html @@ -89,30 +89,30 @@
      __init__(self, name, DataFrame, action='', children=[])TIMBER.Analyzer.Node
      action (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
      Apply(self, actiongrouplist)TIMBER.Analyzer.Node
      children (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
      actionTIMBER.Analyzer.Node
      Apply(self, actionGroupList)TIMBER.Analyzer.Node
      childrenTIMBER.Analyzer.Node
      Clone(self, name='')TIMBER.Analyzer.Node
      Cut(self, name, cut)TIMBER.Analyzer.Node
      DataFrame (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
      DataFrameTIMBER.Analyzer.Node
      Define(self, name, var)TIMBER.Analyzer.Node
      Discriminate(self, name, discriminator)TIMBER.Analyzer.Node
      name (defined in TIMBER.Analyzer.Node)TIMBER.Analyzer.Node
      nameTIMBER.Analyzer.Node
      SetChild(self, child, overwrite=False)TIMBER.Analyzer.Node
      SetChildren(self, children, overwrite=False)TIMBER.Analyzer.Node
      Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.Node
      - + - + - + - + - + - - + + - - - + + + @@ -120,16 +120,19 @@ +  + +  + +  + - + +

      Public Member Functions

      def __init__ (self, name, DataFrame, action='', children=[])
      def __init__ (self, name, DataFrame, action='', children=[])
       Constructor. More...
       
      def Clone (self, name='')
      def Clone (self, name='')
       Clones Node instance without child information and with new name if specified. More...
       
      def SetChild (self, child, overwrite=False)
       Set one of child for the node. More...
       
      def SetChildren (self, children, overwrite=False)
      def SetChildren (self, children, overwrite=False)
       Set multiple children for the node. More...
       
      def Define (self, name, var)
      def Define (self, name, var)
       Produces a new Node with the provided variable/column added. More...
       
      def Cut (self, name, cut)
      def Cut (self, name, cut)
       Produces a new Node with the provided cut/filter applied. More...
       
      def Discriminate (self, name, discriminator)
       Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False. More...
      def Discriminate (self, name, discriminator)
       Produces a dictionary with two new Nodes made by forking this Node based upon a discriminator being True or False. More...
       
      def Apply (self, actiongrouplist)
       Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default. More...
       
      def Apply (self, actionGroupList)
       Applies a single CutGroup/VarGroup or an ordered list of Groups to this Node to produce a new final Node. More...
       
      def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
       Takes a snapshot of the RDataFrame corresponding to this Node. More...
       

      Public Attributes

      - DataFrame
      DataFrame
       DataFrame for the Node.
       
      - name
      name
       Name of the Node.
       
      - action
      action
       Action performed to create this Node.
       
      - children
       children
       List of child nodes. More...
       

      Detailed Description

      @@ -181,12 +184,14 @@

      Constructor.

      -

      Holds the RDataFrame and other associated information for tracking in the #analyzer().

      +

      Holds the RDataFrame and other associated information for tracking in the analyzer.

      Methods which act on the RDataFrame always return a new node since RDataFrame is not modified in place.

      Parameters
      - - + + + +
      nameName for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer.
      DataFrameDataframe to track. children ([Node], optional): Child nodes if they exist. Defaults to []. action (str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame.
      name(str): Name for the node. Duplicate named nodes cannot be tracked simultaneously in the analyzer.
      DataFrame(RDataFrame): Dataframe to track.
      children([Node], optional): Child nodes if they exist. Defaults to [].
      action(str, optional): Action performed (the C++ line). Default is '' but should only be used for a base RDataFrame.
      @@ -194,8 +199,8 @@

      Member Function Documentation

      - -

      ◆ Apply()

      + +

      ◆ Apply()

      @@ -210,7 +215,7 @@

        - actiongrouplist  + actionGroupList  @@ -220,8 +225,13 @@

      -

      Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the #ActiveNode by default.

      -

      actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to #ActiveNode. trackEach (bool, optional): [description]. Defaults to True.

      +

      Applies a single CutGroup/VarGroup or an ordered list of Groups to this Node to produce a new final Node.

      +
      Parameters
      + + +
      actionGroupList(Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node.
      +
      +
      Exceptions
      @@ -230,7 +240,7 @@

      Returns
      -Node New #ActiveNode.
      +Node New Node with all actions applied. @@ -261,7 +271,12 @@

      Clones Node instance without child information and with new name if specified.

      -

      name (str, optional): Name for clone. Defaults to current name.

      +
      Parameters
      +

      TypeErrorIf argument type is not Node.
      + +
      name(str, optional): Name for clone. Defaults to current name.
      +
      +
      Returns
      Node Clone of current instance.
      @@ -303,14 +318,14 @@

      Node with the provided cut/filter applied.

      Parameters
      - - + +
      nameName for the cut for internal tracking and later reference.
      cutsA one-line C++ string that evaluates as a boolean.
      name(str): Name for the cut for internal tracking and later reference.
      cut(str): A one-line C++ string that evaluates as a boolean.
      Returns
      -Node New #ActiveNode.
      +Node New Node object with cut applied.

      @@ -349,8 +364,8 @@

      Node with the provided variable/column added.

      Parameters
      - - + +
      nameName for the column for internal tracking and later reference.
      cutsA one-line C++ string that evaluates to desired value to store.
      name(str): Name for the column for internal tracking and later reference.
      var(str): A one-line C++ string that evaluates to desired value to store.
      @@ -392,11 +407,11 @@

      -

      Produces a dictionary with two new Nodes made by forking the current node based upon a discriminator being True or False.

      +

      Produces a dictionary with two new Nodes made by forking this Node based upon a discriminator being True or False.

      Parameters
      - - + +
      nameName for the discrimination for internal tracking and later reference.
      discriminatorA one-line C++ string that evaluates as a boolean to discriminate on.
      name(str): Name for the discrimination for internal tracking and later reference.
      discriminator(str): A one-line C++ string that evaluates as a boolean to discriminate on.
      @@ -441,7 +456,8 @@

      Parameters
      - + +
      childChild node to add. overwrite (bool, optional): Overwrites all current children stored. Defaults to False.
      child(Node): Child node to add.
      overwrite(bool, optional): Overwrites all current children stored. Defaults to False.
      @@ -487,7 +503,13 @@

      Set multiple children for the node.

      -

      children ([Node], {str:Node}): List of children or dictionary of children. overwrite (bool, optional): Overwrites all current children stored. Defaults to False.

      +
      Parameters
      + + + +
      children([Node], {str:Node}): List of children or dictionary of children.
      overwrite(bool, optional): Overwrites all current children stored. Defaults to False.
      +
      +
      Exceptions
      @@ -549,15 +571,36 @@

      Node.

      Compression algorithm set to 1 (ZLIB) and compression level are set to 1.

      -
              columns ([str] or str): List of columns to keep (str) with regex matching.
-            Provide single string 'all' to include all columns.
-
      Parameters
      +
      Parameters

      TypeErrorIf argument type is not dict or list of Node.
      - - + + + + +
      outfilenameName of the output file
      treenameName of the output TTree lazy (bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False. openOption (str, optional): TFile opening options. Defaults to 'RECREATE'.
      columns([str] or str): List of columns to keep (str) with regex matching. Provide single string 'all' to include all columns.
      outfilename(str): Name of the output file
      treename([type]): Name of the output TTree
      lazy(bool, optional): If False, the RDataFrame actions until this point will be executed here. Defaults to False.
      openOption(str, optional): TFile opening options. Defaults to 'RECREATE'.
      +
      Returns
      +
      +None
      + + + +

      Member Data Documentation

      + +

      ◆ children

      + +
      +
      + + + + +
      TIMBER.Analyzer.Node.children
      +
      + +

      List of child nodes.

      diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html index 2d3b5d1..44909f2 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html @@ -75,14 +75,15 @@ __add__(self, other)TIMBER.Analyzer.Group __getitem__(self, key)TIMBER.Analyzer.Group __init__(self, name)TIMBER.Analyzer.VarGroup - __setitem__(self, key, value) (defined in TIMBER.Analyzer.Group)TIMBER.Analyzer.Group - Add(self, name, item)TIMBER.Analyzer.Group - Drop(self, name)TIMBER.Analyzer.Group - itemsTIMBER.Analyzer.Group - keys(self)TIMBER.Analyzer.Group - nameTIMBER.Analyzer.Group - typeTIMBER.Analyzer.VarGroup - values(self)TIMBER.Analyzer.Group + __setitem__(self, key, value)TIMBER.Analyzer.Group + Add(self, name, item, copy=False)TIMBER.Analyzer.Group + Clone(self, name)TIMBER.Analyzer.Group + Drop(self, name, copy=False)TIMBER.Analyzer.Group + itemsTIMBER.Analyzer.Group + keys(self)TIMBER.Analyzer.Group + nameTIMBER.Analyzer.Group + type (defined in TIMBER.Analyzer.VarGroup)TIMBER.Analyzer.VarGroup + values(self)TIMBER.Analyzer.Group
      diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html index a8310e0..2058e4d 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html @@ -96,17 +96,21 @@

      Public Member Functions

      def __init__ (self, name) + Constructor. More...
        - Public Member Functions inherited from TIMBER.Analyzer.Group def __init__ (self, name)  Constructor. More...
        -def Add (self, name, item) - Add item to Group with a name. More...
      -  -def Drop (self, name) - Drop item from Group with provided name/key. More...
      -  +def Add (self, name, item, copy=False) + Add item to Group with a name. More...
      +  +def Drop (self, name, copy=False) + Drop item from Group with provided name/key. More...
      +  +def Clone (self, name) + Clone the current group with a new name. More...
      +  def __add__ (self, other)  Adds two Groups together. More...
        @@ -116,16 +120,17 @@ def values (self)  Gets list of values from Group. More...
        - -def __setitem__ (self, key, value) +def __setitem__ (self, key, value) + Set key-value pair as you would with dictionary. More...
        def __getitem__ (self, key) + Get value from key as you would with dictionary. More...
        - - + @@ -166,31 +171,15 @@

      + +

      Constructor.

      Parameters

      Public Attributes

       type
       string More...
      + type
       
      - Public Attributes inherited from TIMBER.Analyzer.Group
       name
      - +
      nameName (string) for instance.
      name(str): Name for instance.
      - - -

      Member Data Documentation

      -       -

      ◆ type

      - -
      -
      - - - - -
      TIMBER.Analyzer.VarGroup.type
      -
      - -

      string

      -

      Group type - "cut", "var", "hist"

      -
      The documentation for this class was generated from the following file:
        diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html index fcf818e..09395c4 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer-members.html @@ -72,39 +72,38 @@

        This is the complete list of members for TIMBER.Analyzer.analyzer, including all inherited members.

        - + - + - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + +
        __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs") (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
        __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs")TIMBER.Analyzer.analyzer
        ActiveNodeTIMBER.Analyzer.analyzer
        AddCorrection(self, correction, evalArgs=[], node=None)TIMBER.Analyzer.analyzer
        AddCorrections(self, correctionList, node=None)TIMBER.Analyzer.analyzer
        AllNodes (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
        AllNodesTIMBER.Analyzer.analyzer
        Apply(self, actionGroupList, node=None, trackEach=True)TIMBER.Analyzer.analyzer
        BaseNodeTIMBER.Analyzer.analyzer
        ConcatCols(self, colnames, val='1', connector='&&')TIMBER.Analyzer.analyzer
        CorrectionsTIMBER.Analyzer.analyzer
        Cut(self, name, cuts, node=None)TIMBER.Analyzer.analyzer
        DataFrame(self)TIMBER.Analyzer.analyzer
        Define(self, name, variables, node=None)TIMBER.Analyzer.analyzer
        Discriminate(self, name, discriminator, node=None, passAsActiveNode=None)TIMBER.Analyzer.analyzer
        DrawTemplates(self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')TIMBER.Analyzer.analyzer
        FilterColumnNames(self, columns, node=None)TIMBER.Analyzer.analyzer
        genEventCountTIMBER.Analyzer.analyzer
        GetActiveNode(self)TIMBER.Analyzer.analyzer
        GetBaseNode(self)TIMBER.Analyzer.analyzer
        GetCorrectionNames(self)TIMBER.Analyzer.analyzer
        GetFileName(self)TIMBER.Analyzer.analyzer
        GetFlagString(self, flagList)TIMBER.Analyzer.analyzer
        GetTrackedNodeNames(self) (defined in TIMBER.Analyzer.analyzer)TIMBER.Analyzer.analyzer
        GetTriggerString(self, trigList)TIMBER.Analyzer.analyzer
        isDataTIMBER.Analyzer.analyzer
        lhaidTIMBER.Analyzer.analyzer
        MakeTemplateHistos(self, templateHist, variables, node=None)TIMBER.Analyzer.analyzer
        MakeWeightCols(self, node=None, correctionNames=None, dropList=[])TIMBER.Analyzer.analyzer
        Nminus1(self, node, cutgroup)TIMBER.Analyzer.analyzer
        preV6TIMBER.Analyzer.analyzer
        PrintNodeTree(self, outfilename, verbose=False)TIMBER.Analyzer.analyzer
        SetActiveNode(self, node)TIMBER.Analyzer.analyzer
        Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.analyzer
        TrackNode(self, node)TIMBER.Analyzer.analyzer
        CorrectionsTIMBER.Analyzer.analyzer
        Cut(self, name, cuts, node=None)TIMBER.Analyzer.analyzer
        DataFrame(self)TIMBER.Analyzer.analyzer
        Define(self, name, variables, node=None)TIMBER.Analyzer.analyzer
        Discriminate(self, name, discriminator, node=None, passAsActiveNode=None)TIMBER.Analyzer.analyzer
        DrawTemplates(self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')TIMBER.Analyzer.analyzer
        FilterColumnNames(self, columns, node=None)TIMBER.Analyzer.analyzer
        genEventCountTIMBER.Analyzer.analyzer
        GetActiveNode(self)TIMBER.Analyzer.analyzer
        GetBaseNode(self)TIMBER.Analyzer.analyzer
        GetCorrectionNames(self)TIMBER.Analyzer.analyzer
        GetFileName(self)TIMBER.Analyzer.analyzer
        GetFlagString(self, flagList)TIMBER.Analyzer.analyzer
        GetTrackedNodeNames(self)TIMBER.Analyzer.analyzer
        GetTriggerString(self, trigList)TIMBER.Analyzer.analyzer
        isDataTIMBER.Analyzer.analyzer
        lhaidTIMBER.Analyzer.analyzer
        MakeTemplateHistos(self, templateHist, variables, node=None)TIMBER.Analyzer.analyzer
        MakeWeightCols(self, node=None, correctionNames=None, dropList=[])TIMBER.Analyzer.analyzer
        Nminus1(self, node, cutgroup)TIMBER.Analyzer.analyzer
        preV6TIMBER.Analyzer.analyzer
        PrintNodeTree(self, outfilename, verbose=False)TIMBER.Analyzer.analyzer
        SetActiveNode(self, node)TIMBER.Analyzer.analyzer
        Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.analyzer
        TrackNode(self, node)TIMBER.Analyzer.analyzer
        diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html index 10f2679..f4a49b8 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html @@ -89,10 +89,11 @@ - + + + @@ -108,8 +109,8 @@ - + + @@ -117,14 +118,11 @@ - - - - + - + @@ -168,8 +166,8 @@ - + + @@ -194,15 +192,15 @@

        Main class for TIMBER.

        Implements an interface with ROOT's RDataFrame (RDF). The default values assume the data is in NanoAOD format. However, any TTree can be used. The class works on the basis of nodes and actions where nodes are an RDF instance and an action (or series of actions) can transform the RDF to create a new node(s).

        When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new ActiveNode

        -

        Member Function Documentation

        - -

        ◆ AddCorrection()

        +

        Constructor & Destructor Documentation

        + +

        ◆ __init__()

        Public Member Functions

        -def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
        def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
         Constructor. More...
         
        def DataFrame (self)
         DataFrame of the ActiveNode. More...
         
        def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
         
        def TrackNode (self, node)
         Add a node to track. More...
         
        -def GetTrackedNodeNames (self)
        def GetTrackedNodeNames (self)
         Gets the names of the nodes currently being tracked. More...
         
        def GetCorrectionNames (self)
         Get names of all corrections being tracked. More...
        def FilterColumnNames (self, columns, node=None)
         Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node. More...
         
        def ConcatCols (self, colnames, val='1', connector='&&')
         Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator). More...
         
        def GetTriggerString (self, trigList)
         Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string (ConcatCols) More...
         Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string. More...
         
        def GetFlagString (self, flagList)
         Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols) More...
         Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string. More...
         
        def GetFileName (self)
         Get input file name. More...
         BaseNode
         Node. More...
         
        - AllNodes
         AllNodes
         {str:Node} More...
         
         Corrections
         dict More...
        - + @@ -211,19 +209,19 @@

        - + - + - + @@ -233,35 +231,28 @@

        -

        Add a Correction to track.

        -

        Sets new active node with all correction variations calculated as new columns.

        +

        Constructor.

        +

        Sets up the tracking of actions on an RDataFrame as nodes. Also looks up and stores common information in NanoAOD such as the number of generated events in a file (genEventCount), the LHA ID of the PDF set in the LHEPdfWeights branch (lhaid), if the file is data (isData), and if the file is before NanoAOD version 6 (preV6).

        Parameters

        def TIMBER.Analyzer.analyzer.AddCorrection def TIMBER.Analyzer.analyzer.__init__ (   self,  correction, fileName,
         evalArgs = [], eventsTreeName = "Events",
         node = None runTreeName = "Runs" 
        - -
        correctionCorrection object to add. evalArgs ([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame. node (Node, optional): Node to add correction on top of. Defaults to ActiveNode.
        - - -
        Exceptions
        - - - + + +
        TypeErrorIf argument types are not Node and Correction.
        ValueErrorIf Correction type is not a weight or uncertainty.
        fileName(str): A ROOT file path or the path to a txt file which contains several ROOT file paths separated by new line characters.
        eventsTreeName(str, optional): Name of TTree in fileName where events are stored. Defaults to "Events" (for NanoAOD)
        runTreeName(str, optional): NAme of TTree in fileName where run information is stored (for generated event info in simulation). Defaults to "Runs" (for NanoAOD)
        -
        Returns
        -
        -Node New ActiveNode.
        - -

        ◆ AddCorrections()

        +

        Member Function Documentation

        + +

        ◆ AddCorrection()

        - + @@ -270,7 +261,13 @@

        - + + + + + + + @@ -286,11 +283,20 @@

        -

        Add multiple Corrections to track.

        -

        Sets new ActiveNode with all correction variations calculated as new columns.

        +

        Add a Correction to track.

        +

        Sets new active node with all correction variations calculated as new columns.

        Parameters

        def TIMBER.Analyzer.analyzer.AddCorrections def TIMBER.Analyzer.analyzer.AddCorrection (   self,  correctionList, correction,
         evalArgs = [],
        - + + + +
        correctionListList of Correction objects to add. node (Node, optional): [description]. Defaults to None.
        correction(Correction): Correction object to add.
        evalArgs([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame.
        node(Node, optional): Node to add correction on top of. Defaults to ActiveNode.
        + + +
        Exceptions
        + + +
        TypeErrorIf argument types are not Node and Correction.
        ValueErrorIf Correction type is not a weight or uncertainty.
        @@ -300,14 +306,14 @@

        -

        ◆ Apply()

        + +

        ◆ AddCorrections()

        - + @@ -316,19 +322,13 @@

        - - - - - - - + - + @@ -338,11 +338,12 @@

        -

        Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default.

        -

        actionGroupList (Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node. node ([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode. trackEach (bool, optional): [description]. Defaults to True.

        -
        Exceptions
        -

        def TIMBER.Analyzer.analyzer.Apply def TIMBER.Analyzer.analyzer.AddCorrections (   self,  actionGroupList,
         node = None, correctionList,
         trackEach = True node = None 
        - +

        Add multiple Corrections to track.

        +

        Sets new ActiveNode with all correction variations calculated as new columns.

        +
        Parameters
        +
        TypeErrorIf argument type is not Node.
        + +
        correctionList([Correction]): List of Correction objects to add.
        node(Node, optional): [description]. Defaults to None.
        @@ -352,14 +353,14 @@

        -

        ◆ ConcatCols()

        + +

        ◆ Apply()

        - + @@ -368,19 +369,19 @@

        - + - + - + @@ -390,16 +391,24 @@

        -

        Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator).

        +

        Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default.

        Parameters

        def TIMBER.Analyzer.analyzer.ConcatCols def TIMBER.Analyzer.analyzer.Apply (   self,  colnames, actionGroupList,
         val = '1', node = None,
         connector = '&&' trackEach = True 
        - + + + +
        colnamesList of column names (str). val (str, optional): Value to test equality of all columns. Defaults to '1'. connector (str, optional): C++ boolean logic operator between column equality checks. Defaults to '&&'.
        actionGroupList(Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node.
        node([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
        trackEach(bool, optional): [description]. Defaults to True.
        + + +
        Exceptions
        + +
        TypeErrorIf argument type is not Node.
        Returns
        -str Concatenated string of the entire evaluation that in C++ will return a bool.
        +Node New ActiveNode.
        @@ -445,8 +454,9 @@

        ActiveNode.

        Parameters
        - - + + +
        nameName for the cut for internal tracking and later reference.
        cutsA one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans. node (Node, optional): Node on which to apply the cut/filter. Defaults to ActiveNode.
        name(str): Name for the cut for internal tracking and later reference.
        cuts(str, CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans.
        node(Node, optional): Node on which to apply the cut/filter. Defaults to ActiveNode.
        @@ -477,6 +487,8 @@

        + +

        DataFrame of the ActiveNode.

        Returns
        RDataFrame Dataframe for the active node.
        @@ -525,8 +537,9 @@

        ActiveNode.

        Parameters
        - - + + +
        nameName for the column for internal tracking and later reference.
        cutsA one-line C++ string that evaluates to desired value to store or a #VarGroup object which contains multiple actions that evaluate to the desired values. node (Node, optional): Node to create the new variable/column on top of. Defaults to ActiveNode.
        name(str): Name for the column for internal tracking and later reference.
        variables(str, VarGroup): A one-line C++ string that evaluates to desired value to store or a VarGroup object which contains multiple actions that evaluate to the desired values.
        node(Node, optional): Node to create the new variable/column on top of. Defaults to ActiveNode.
        @@ -538,7 +551,7 @@

        Returns
        -Node New ActiveNode.
        +Node New ActiveNode.

        @@ -589,8 +602,10 @@

        ActiveNode by default).

        Parameters
        - - + + + +
        nameName for the discrimination for internal tracking and later reference.
        discriminatorA one-line C++ string that evaluates as a boolean to discriminate for the forking of the node. node (Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode. passAsActiveNode (bool, optional): True if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
        name(str): Name for the discrimination for internal tracking and later reference.
        discriminator(str): A one-line C++ string that evaluates as a boolean to discriminate for the forking of the node.
        node(Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
        passAsActiveNode(bool, optional): True if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
        @@ -653,8 +668,11 @@

        MakeTemplateHistos().

        Parameters
        - - + + + + +
        hGroupUncertainty template histograms.
        saveLocationPath to folder to save histograms. projection (str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D. projectionArgs (tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z). fileType (str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()).
        hGroup(HistGroup): Uncertainty template histograms.
        saveLocation(str): Path to folder to save histograms.
        projection(str, optional): "X" (Default), "Y", or "Z". Axis to project onto if templates are not 1D.
        projectionArgs(tuple, optional): A tuple of arguments provided to ROOT TH1 ProjectionX(Y)(Z).
        fileType(str, optional): File type - "pdf", "png", etc (must be supported by TCanvas.Print()).
        @@ -699,7 +717,8 @@

        Parameters
        - + +
        columnsList of column names (str) node (Node, optional): Node to compare against. Defaults to BaseNode.
        columns([str]): List of column names (str)
        node(Node, optional): Node to compare against. Defaults to BaseNode.
        @@ -823,10 +842,10 @@

        -

        Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string (ConcatCols)

        +

        Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string.

        Parameters
        - +
        flagListList of flag names
        flagList[str]: List of flag names
        @@ -834,6 +853,27 @@

        +

        ◆ GetTrackedNodeNames()

        + +
        +
        + + + + + + + + +
        def TIMBER.Analyzer.analyzer.GetTrackedNodeNames ( self)
        +
        + +

        Gets the names of the nodes currently being tracked.

        +
        Returns
        [str]: List of names of nodes being tracked.
        +
        @@ -862,10 +902,10 @@

        -

        Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string (ConcatCols)

        +

        Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string.

        Parameters
        - +
        trigListList of trigger names
        trigList[str]: List of trigger names
        @@ -916,9 +956,9 @@

        MakeWeightCols().

        Parameters
        - - - + + +
        templateHistA TH1, TH2, or TH3 used as a template to create the histograms.
        variablesA list of the columns/variables to plot (ex. ["x","y","z"]).
        nodeNode to plot histograms from. Defaults to ActiveNode.
        templateHist(TH1,TH2,TH3): A TH1, TH2, or TH3 used as a template to create the histograms.
        variables([str]): A list of the columns/variables to plot (ex. ["x","y","z"]).
        node(Node): Node to plot histograms from. Defaults to ActiveNode.
        @@ -972,9 +1012,9 @@

        Parameters
        - - - + + +
        nodeNode to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
        correctionNamesList of correction names (strings) to consider. Default is None in which case all corrections being tracked are considered.
        dropListList of correction names (strings) to not consider. Default is empty lists in which case no corrections are dropped from consideration.
        node(Node): Node to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
        correctionNameslist(str): List of correction names (strings) to consider. Default is None in which case all corrections being tracked are considered.
        dropListlist(str): List of correction names (strings) to not consider. Default is empty lists in which case no corrections are dropped from consideration.
        @@ -1020,8 +1060,8 @@

        PrintNodeTree() to visualize.

        Parameters
        - - + +
        nodeNode to build on.
        cutgroupGroup of N cuts to apply.
        node(Node): Node to build on.
        cutgroup(CutGroup): Group of N cuts to apply.
        @@ -1067,7 +1107,8 @@

        Parameters
        - + +
        outfilenameName of output PDF file. verbose (bool, optional): Turns on verbose node labels. Defaults to False.
        outfilename(str): Name of output PDF file.
        verbose(bool, optional): Turns on verbose node labels. Defaults to False.
        @@ -1106,7 +1147,7 @@

        Parameters
        - +
        nodeNode to set as ActiveNode.
        node(Node): Node to set as ActiveNode.
        @@ -1202,10 +1243,10 @@

        Add a node to track.

        -

        Will add the node to #DataFrames dictionary with key node.name.

        +

        Will add the node to AllNodes dictionary with key node.name.

        Parameters
        - +
        nodeNode to start tracking.
        node(Node): Node to start tracking.
        @@ -1238,6 +1279,23 @@

        Node.

        Active node. Access via GetActiveNode(). Set via SetActiveNode().

        +

        +
        + +

        ◆ AllNodes

        + +
        +
        + + + + +
        TIMBER.Analyzer.analyzer.AllNodes
        +
        + +

        {str:Node}

        +

        List of all nodes being tracked.

        +
        diff --git a/docs/md__t_i_m_b_e_r__framework__r_e_a_d_m_e.html b/docs/md__t_i_m_b_e_r__framework__r_e_a_d_m_e.html index cfca4bd..ec8e933 100644 --- a/docs/md__t_i_m_b_e_r__framework__r_e_a_d_m_e.html +++ b/docs/md__t_i_m_b_e_r__framework__r_e_a_d_m_e.html @@ -67,7 +67,7 @@

        Home to generic C++ modules.

        Developer Notes

        -

        Adding C++ modules for use in TIMBER is relatively simple but the code makes several assumptions about the structure of the module if you'd like to use it as a #Correction.

        +

        Adding C++ modules for use in TIMBER is relatively simple but the code makes several assumptions about the structure of the module if you'd like to use it as a TIMBER.Analyzer.Correction.

        A correction module should be built as a class so that the initializer can be used to book objects like files, histograms, etc that we want to load before looping over the RDataFrame. A class method should be written to perform the evaluation during the event loop. This function should be named eval by default. However, there is support for other function names for building multiple methods within the class.

        The output of eval should be a vector organized as [nominal,up,down] if the function calculates a correction and uncertainty or [up,down] if only calculating an uncertainty. The name of the file is used to determine which type of output to expect for template building. An output of the first type should have a file name that end in _SF.cc or _weight.cc and outputs of of the second type should have a file name that ends in _uncert.cc.

        Outputting a vector of vectors is not currently supported. One might want to do this if, for example, all jets in a vector need the same correction in which case a vector of [nominal,up,down] vectors could be calculated where the index of each [nominal,up,down] matches the index of the matching jet in the jet vector. While this would be useful, some development would be needed to determine how to handle the various output value with the automated correction tools.

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diff --git a/docs/search/variables_2.js b/docs/search/variables_2.js index 53f17aa..6961527 100644 --- a/docs/search/variables_2.js +++ b/docs/search/variables_2.js @@ -1,4 +1,5 @@ var searchData= [ + ['children',['children',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a384a4bd7b703ac74f58158318620d9ff',1,'TIMBER::Analyzer::Node']]], ['corrections',['Corrections',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a3cd671597a82123eb3d523a56c4a6a9d',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_3.js b/docs/search/variables_3.js index 61d55d7..63247d4 100644 --- a/docs/search/variables_3.js +++ b/docs/search/variables_3.js @@ -1,4 +1,4 @@ var searchData= [ - ['geneventcount',['genEventCount',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#ad1d9977e8acbb8938859b17f2e8d9699',1,'TIMBER::Analyzer::analyzer']]] + ['dataframe',['DataFrame',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#abb2bd4f43dccbc1f74ba11306485e5ca',1,'TIMBER::Analyzer::Node']]] ]; diff --git a/docs/search/variables_4.js b/docs/search/variables_4.js index fd9bc2c..61d55d7 100644 --- a/docs/search/variables_4.js +++ b/docs/search/variables_4.js @@ -1,5 +1,4 @@ var searchData= [ - ['isdata',['isData',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#ae24432a707247662f5573bc8a043fc9e',1,'TIMBER::Analyzer::analyzer']]], - ['items',['items',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#abf61355c44868c6a2fb0c56f5e32e50a',1,'TIMBER::Analyzer::Group']]] + ['geneventcount',['genEventCount',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#ad1d9977e8acbb8938859b17f2e8d9699',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_5.js b/docs/search/variables_5.js index 6ac0d1c..fd9bc2c 100644 --- a/docs/search/variables_5.js +++ b/docs/search/variables_5.js @@ -1,4 +1,5 @@ var searchData= [ - ['lhaid',['lhaid',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a06c0c43d14f4560e8f0fedb5dfe0164d',1,'TIMBER::Analyzer::analyzer']]] + ['isdata',['isData',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#ae24432a707247662f5573bc8a043fc9e',1,'TIMBER::Analyzer::analyzer']]], + ['items',['items',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#abf61355c44868c6a2fb0c56f5e32e50a',1,'TIMBER::Analyzer::Group']]] ]; diff --git a/docs/search/variables_6.js b/docs/search/variables_6.js index 9cd3085..6ac0d1c 100644 --- a/docs/search/variables_6.js +++ b/docs/search/variables_6.js @@ -1,4 +1,4 @@ var searchData= [ - ['name',['name',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#aacb9171e34799a5b9e86f5f687230ef2',1,'TIMBER.Analyzer.Group.name()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html#a14c46c4d02dec27db914b3b567737b09',1,'TIMBER.Analyzer.Correction.name()']]] + ['lhaid',['lhaid',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a06c0c43d14f4560e8f0fedb5dfe0164d',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_7.js b/docs/search/variables_7.js index 8238c2e..fa0151c 100644 --- a/docs/search/variables_7.js +++ b/docs/search/variables_7.js @@ -1,4 +1,4 @@ var searchData= [ - ['prev6',['preV6',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a123d460f5eb6b71957244a4fe5762f4e',1,'TIMBER::Analyzer::analyzer']]] + ['name',['name',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a74a69f08d54e97fbd143b51641ff1ff6',1,'TIMBER.Analyzer.Node.name()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#aacb9171e34799a5b9e86f5f687230ef2',1,'TIMBER.Analyzer.Group.name()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html#a14c46c4d02dec27db914b3b567737b09',1,'TIMBER.Analyzer.Correction.name()']]] ]; diff --git a/docs/search/variables_8.js b/docs/search/variables_8.js index fd1e3e6..8238c2e 100644 --- a/docs/search/variables_8.js +++ b/docs/search/variables_8.js @@ -1,4 +1,4 @@ var searchData= [ - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] + ['prev6',['preV6',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a123d460f5eb6b71957244a4fe5762f4e',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_9.js b/docs/search/variables_9.js index fd1e3e6..613ff59 100644 --- a/docs/search/variables_9.js +++ b/docs/search/variables_9.js @@ -1,4 +1,4 @@ var searchData= [ - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] + ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER::Analyzer::Group']]] ]; From 3cbb0dd3bd8b5147f7d14c67650865475b6d7786 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 17:56:16 -0400 Subject: [PATCH 13/17] Add type documentation for Group subclasses --- TIMBER/Analyzer.py | 9 ++++++++ ..._r_1_1_analyzer_1_1_cut_group-members.html | 2 +- ..._i_m_b_e_r_1_1_analyzer_1_1_cut_group.html | 21 +++++++++++++++++-- ...r_1_1_analyzer_1_1_hist_group-members.html | 2 +- ...i_m_b_e_r_1_1_analyzer_1_1_hist_group.html | 21 +++++++++++++++++-- ..._r_1_1_analyzer_1_1_var_group-members.html | 2 +- ..._i_m_b_e_r_1_1_analyzer_1_1_var_group.html | 21 +++++++++++++++++-- docs/search/all_10.js | 2 +- docs/search/variables_9.js | 2 +- 9 files changed, 71 insertions(+), 11 deletions(-) diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index d85649a..133f149 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -1066,6 +1066,9 @@ def __init__(self, name): @param name (str): Name for instance. ''' super(CutGroup,self).__init__(name) + ## @var type + # + # Set to 'cut' so group is treated as cut/filter actions. self.type = 'cut' # Subclass for vars/columns @@ -1077,6 +1080,9 @@ def __init__(self, name): @param name (str): Name for instance. ''' super(VarGroup,self).__init__(name) + ## @var type + # + # Set to 'var' so group is treated as column definition actions. self.type = 'var' # Subclass for histograms @@ -1088,6 +1094,9 @@ def __init__(self, name): @param name (str): Name for instance. ''' super(HistGroup,self).__init__(name) + ## @var type + # + # Set to 'hist' so group is treated as histograms. self.type = 'hist' def Do(self,THmethod,argsTuple=()): diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html index 7ec6ce9..3211650 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group-members.html @@ -82,7 +82,7 @@ itemsTIMBER.Analyzer.Group keys(self)TIMBER.Analyzer.Group nameTIMBER.Analyzer.Group - type (defined in TIMBER.Analyzer.CutGroup)TIMBER.Analyzer.CutGroup + typeTIMBER.Analyzer.CutGroup values(self)TIMBER.Analyzer.Group
        diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html index e2390e7..1ed1b25 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html @@ -129,8 +129,8 @@ - + + @@ -180,6 +180,23 @@

        Member Data Documentation

        + +

        ◆ type

        + +
        +
        +

        Public Attributes

        - type
         type
         Set to 'cut' so group is treated as cut/filter actions. More...
         
        - Public Attributes inherited from TIMBER.Analyzer.Group
         name
        + + + +
        TIMBER.Analyzer.CutGroup.type
        +
        + +

        Set to 'cut' so group is treated as cut/filter actions.

        +
        The documentation for this class was generated from the following file:
          diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html index f4ec488..7d4b8cf 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group-members.html @@ -83,7 +83,7 @@ itemsTIMBER.Analyzer.Group keys(self)TIMBER.Analyzer.Group nameTIMBER.Analyzer.Group - type (defined in TIMBER.Analyzer.HistGroup)TIMBER.Analyzer.HistGroup + typeTIMBER.Analyzer.HistGroup values(self)TIMBER.Analyzer.Group diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html index 89f5f05..8ce4dd2 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html @@ -132,8 +132,8 @@ - + + @@ -228,6 +228,23 @@

          Returns
          HistGroup or None: New HistGroup with THmethod applied if THmethod does not return None; else None.

          Examples

          To scale all histograms by 0.5

          myHistGroup.Do("Scale",(0.5))
          + + +

          Member Data Documentation

          + +

          ◆ type

          + +
          +
          +

          Public Attributes

          - type
           type
           Set to 'hist' so group is treated as histograms. More...
           
          - Public Attributes inherited from TIMBER.Analyzer.Group
           name
          + + + +
          TIMBER.Analyzer.HistGroup.type
          +
          + +

          Set to 'hist' so group is treated as histograms.

          +
          The documentation for this class was generated from the following file:
            diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html index 44909f2..5d24a87 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html @@ -82,7 +82,7 @@ itemsTIMBER.Analyzer.Group keys(self)TIMBER.Analyzer.Group nameTIMBER.Analyzer.Group - type (defined in TIMBER.Analyzer.VarGroup)TIMBER.Analyzer.VarGroup + typeTIMBER.Analyzer.VarGroup values(self)TIMBER.Analyzer.Group diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html index 2058e4d..0ef5613 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html @@ -129,8 +129,8 @@ - + + @@ -180,6 +180,23 @@

            Member Data Documentation

            + +

            ◆ type

            + +
            +
            +

            Public Attributes

            - type
             type
             Set to 'var' so group is treated as column definition actions. More...
             
            - Public Attributes inherited from TIMBER.Analyzer.Group
             name
            + + + +
            TIMBER.Analyzer.VarGroup.type
            +
            + +

            Set to 'var' so group is treated as column definition actions.

            +
            The documentation for this class was generated from the following file:
              diff --git a/docs/search/all_10.js b/docs/search/all_10.js index ba43fcc..f21f2cc 100644 --- a/docs/search/all_10.js +++ b/docs/search/all_10.js @@ -2,5 +2,5 @@ var searchData= [ ['timber',['TIMBER',['../index.html',1,'']]], ['tracknode',['TrackNode',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a347cc11046629e9bdc838e4c17f6f96b',1,'TIMBER::Analyzer::analyzer']]], - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER::Analyzer::Group']]] + ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] ]; diff --git a/docs/search/variables_9.js b/docs/search/variables_9.js index 613ff59..fd1e3e6 100644 --- a/docs/search/variables_9.js +++ b/docs/search/variables_9.js @@ -1,4 +1,4 @@ var searchData= [ - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER::Analyzer::Group']]] + ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] ]; From cb424f29364d1e6457da6aaef735c38776e89089 Mon Sep 17 00:00:00 2001 From: lcorcodilos Date: Mon, 19 Oct 2020 20:33:00 -0400 Subject: [PATCH 14/17] Fix internal Doxygen linking and layout --- TIMBER/Analyzer.py | 4 - TIMBER/Tools/Common.py | 30 +- TIMBER/Tools/Plot.py | 18 +- docs/_common.html | 73 ++ docs/_common_8py.html | 104 ++- docs/_plot_8py.html | 8 +- docs/class_p_d_fweight__uncert.html | 8 +- docs/class_s_j_btag___s_f.html | 8 +- 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docs/search/variables_8.js | 2 +- docs/search/variables_9.js | 2 +- docs/struct_collection.html | 16 +- doxysetup/Doxyfile | 2 +- doxysetup/DoxygenLayout.xml | 10 +- 150 files changed, 2868 insertions(+), 1048 deletions(-) create mode 100644 docs/_common.html create mode 100644 docs/group___common.html create mode 100644 docs/group___plot.html create mode 100644 docs/modules.html create mode 100644 docs/namespace_common.html create mode 100644 docs/namespace_common_1_1py.html create mode 100644 docs/namespace_plot.html create mode 100644 docs/namespace_plot_1_1py.html create mode 100644 docs/namespaces.html create mode 100644 docs/search/groups_0.html create mode 100644 docs/search/groups_0.js create mode 100644 docs/search/groups_1.html create mode 100644 docs/search/groups_1.js create mode 100644 docs/search/namespaces_0.html create mode 100644 docs/search/namespaces_0.js create mode 100644 docs/search/namespaces_1.html create mode 100644 docs/search/namespaces_1.js diff --git a/TIMBER/Analyzer.py b/TIMBER/Analyzer.py index 133f149..84f93ee 100755 --- a/TIMBER/Analyzer.py +++ b/TIMBER/Analyzer.py @@ -46,10 +46,6 @@ def __init__(self,fileName,eventsTreeName="Events",runTreeName="Runs"): simulation). Defaults to "Runs" (for NanoAOD) """ - ## @var BaseDataFrame - # ROOT.RDataFrame - # - # Initial RDataFrame - no modifications. ## @var BaseNode # Node # diff --git a/TIMBER/Tools/Common.py b/TIMBER/Tools/Common.py index 1c272b4..0b5ced4 100755 --- a/TIMBER/Tools/Common.py +++ b/TIMBER/Tools/Common.py @@ -1,7 +1,6 @@ -'''@docstring Common.py - -Home to commonly used tools available for use that can be generic or TIMBER specific - +'''@addtogroup Common Common Tools +Commonly used functions available for use that can be generic or TIMBER specific. +@{ ''' import json, ROOT, os, subprocess @@ -9,9 +8,9 @@ from TIMBER.Tools.CMS import CMS_lumi, tdrstyle from contextlib import contextmanager from collections import OrderedDict -################### +#-----------------# # TIMBER specific # -################### +#-----------------# def CutflowHist(name,node,efficiency=False): '''Draws a cutflow histogram using the report feature of RDF. @@ -90,9 +89,9 @@ def StitchQCD(QCDdict,normDict=None): return out -########### +#---------# # Generic # -########### +#---------# def CompileCpp(blockcode,library=False): '''Compiles C++ code via the gInterpreter. @@ -186,6 +185,18 @@ def ConcatCols(self,colnames,val='1',connector='&&'): return concat def GetHistBinningTuple(h): + '''Gets the binning information for a histogram and returns it + as a tuple ordered like the arguements to construct a new histogram. + Supports TH1, TH2, and TH3. + + @param h (TH1): Input histogram from which to get the binning information. + + Raises: + TypeError: If histogram does not derive from TH1. + + Returns: + tuple(tuple, int): First element of return is the binning and the second element is the dimensionality. + ''' # At least 1D (since TH2 and TH3 inherit from TH1) if isinstance(h,ROOT.TH1): # Variable array vs fixed binning @@ -385,4 +396,5 @@ def cd(newdir): try: yield finally: - os.chdir(prevdir) \ No newline at end of file + os.chdir(prevdir) +## @} \ No newline at end of file diff --git a/TIMBER/Tools/Plot.py b/TIMBER/Tools/Plot.py index d49985a..e253ce9 100644 --- a/TIMBER/Tools/Plot.py +++ b/TIMBER/Tools/Plot.py @@ -1,9 +1,7 @@ -'''@docstring Plot.py - -Functions to easily plot histograms together in various configurations. - +'''@addtogroup Plot Plotting Tools + Functions to easily plot histograms together in various configurations. + @{ ''' - from TIMBER.Tools.CMS import CMS_lumi import ROOT, collections from collections import OrderedDict @@ -11,9 +9,9 @@ def CompareShapes(outfilename,year,prettyvarname,bkgs={},signals={},names={},colors={},scale=True,stackBkg=False): '''Create a plot that compares the shapes of backgrounds versus signal. - Backgrounds will be stacked together and signals will be plot separately. - Total background and signals are scaled to 1 if scale == True. Inputs organized - as dicts so that keys can match across dicts (ex. bkgs and bkgNames). + Backgrounds will be stacked together and signals will be plot separately. + Total background and signals are scaled to 1 if scale == True. Inputs organized + as dicts so that keys can match across dicts (ex. bkgs and bkgNames). @param outfilename (string): Path where plot will be saved. @param prettyvarname (string): What will be assigned to as the axis title. @@ -23,6 +21,7 @@ def CompareShapes(outfilename,year,prettyvarname,bkgs={},signals={},names={},col @param colors ({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}. @param scale (bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True. ''' + # Initialize c = ROOT.TCanvas('c','c',800,700) legend = ROOT.TLegend(0.6,0.72,0.87,0.88) @@ -435,4 +434,5 @@ def MakeUpDown(hist): hist_up.SetBinContent(xbin,nom+errup) hist_down.SetBinContent(xbin,nom-errdown) - return hist_up,hist_down \ No newline at end of file + return hist_up,hist_down +## @} \ No newline at end of file diff --git a/docs/_common.html b/docs/_common.html new file mode 100644 index 0000000..f01f51f --- /dev/null +++ b/docs/_common.html @@ -0,0 +1,73 @@ + + + + + + + +TIMBER: $title + + + + + + + + + + +
              +
              + + + + + + +
              +
              TIMBER +  beta +
              +
              Tree Interface for Making Binned Events with RDataFrame
              +
              +
              + + + + + + + + +
              +
              + + +
              + +
              + +
              +
              +

              Home to commonly used tools available for use that can be generic or TIMBER specific

              +
              + +
              +Generated by   +doxygen + 1.8.13 +
              + + diff --git a/docs/_common_8py.html b/docs/_common_8py.html index ec83765..e6aa87b 100644 --- a/docs/_common_8py.html +++ b/docs/_common_8py.html @@ -77,49 +77,49 @@ - - + + - + - + - - + + - + - + - + - + + - + - + - + - + - + - + - +

              Functions

              def TIMBER.Tools.Common.CutflowHist (name, node, efficiency=False)
               TIMBER specific #. More...
              def CutflowHist (name, node, efficiency=False)
               Draws a cutflow histogram using the report feature of RDF. More...
               
              def TIMBER.Tools.Common.CutflowTxt (name, node, efficiency=False)
              def CutflowTxt (name, node, efficiency=False)
               Writes out the cutflow as a text file using the report feature of RDF. More...
               
              def TIMBER.Tools.Common.StitchQCD (QCDdict, normDict=None)
              def StitchQCD (QCDdict, normDict=None)
               Stitches together histograms in QCD hist groups. More...
               
              def TIMBER.Tools.Common.CompileCpp (blockcode, library=False)
               Generic #. More...
              def CompileCpp (blockcode, library=False)
               Compiles C++ code via the gInterpreter. More...
               
              def TIMBER.Tools.Common.OpenJSON (filename)
              def OpenJSON (filename)
               Opens JSON file as a dictionary (accounting for unicode encoding) More...
               
              def TIMBER.Tools.Common.AsciiEncodeDict (data)
              def AsciiEncodeDict (data)
               Encodes dict to ascii from unicode. More...
               
              def TIMBER.Tools.Common.ConcatCols (self, colnames, val='1', connector='&&')
              def ConcatCols (self, colnames, val='1', connector='&&')
               Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator). More...
               
              -def TIMBER.Tools.Common.GetHistBinningTuple (h)
              def GetHistBinningTuple (h)
               Gets the binning information for a histogram and returns it as a tuple ordered like the arguements to construct a new histogram. More...
               
              def TIMBER.Tools.Common.ColliMate (myString, width=18)
              def ColliMate (myString, width=18)
               Collimates strings to have consistent spacing between first character of word i with the first character of word i+1 and i-1. More...
               
              def TIMBER.Tools.Common.DictStructureCopy (inDict)
              def DictStructureCopy (inDict)
               Recursively copies the structure of a dictionary with non-dict items replaced with 0. More...
               
              def TIMBER.Tools.Common.DictCopy (inDict)
              def DictCopy (inDict)
               Recursively copy dictionary structure and values. More...
               
              def TIMBER.Tools.Common.ExecuteCmd (cmd, dryrun=False)
              def ExecuteCmd (cmd, dryrun=False)
               Executes shell command via subprocess.call() and prints the command for posterity. More...
               
              def TIMBER.Tools.Common.DictToLatexTable (dict2convert, outfilename, roworder=[], columnorder=[])
              def DictToLatexTable (dict2convert, outfilename, roworder=[], columnorder=[])
               Converts a dictionary with two layers (ie. More...
               
              def TIMBER.Tools.Common.FindCommonString (string_list)
              def FindCommonString (string_list)
               Finds a common string between a list of strings. More...
               
              def TIMBER.Tools.Common.cd (newdir)
              def cd (newdir)
               Context manager to cd to another folder in the middle of a python script. More...
               
              @@ -250,16 +250,16 @@

              -

              Generic #.

              -

              Compiles C++ code via the gInterpreter. 

              A python string (the actual code) can be passed or a file name
-(the file will be opened and read). If a file is passed,
-the C++ code can be compiled
-as a library and if in the future the C++ script is older than the library,
-then the library will be loaded instead.
+
              Compiles C++ code via the gInterpreter. 
              
+
              A python string (the actual code) can be passed or a file name (the file will be opened and read). If a file is passed, the C++ code can be compiled as a library and if in the future the C++ script is older than the library, then the library will be loaded instead.
              
+
              Parameters
              
+  
+    
+    
+  
              blockcode(str): Either a block of C++ code or a file name to open. 
              library(bool, optional): Compiles a library which can be later loaded to avoid compilation time. Defaults to False. 
              
+  
              
+
              
 
-@param blockcode (str): Either a block of C++ code or a file name to open.
-@param library (bool, optional): Compiles a library which can be later loaded
-        to avoid compilation time. Defaults to False.
               @@ -347,12 +347,16 @@

              -

              TIMBER specific #.

              -

              Draws a cutflow histogram using the report feature of RDF. 

              @param name (str): Name of output histogram
-@param node (Node): Input Node from which to get the cutflow.
-@param efficiency (bool, optional): Reports an efficiency instead of yields
-        (relative to number of events before any cuts on Node).
-
              Returns
              +

              Draws a cutflow histogram using the report feature of RDF.

              +
              Parameters
              + + + + +
              name(str): Name of output histogram
              node(Node): Input Node from which to get the cutflow.
              efficiency(bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node).
              +
              +
              +
              Returns
              TH1 Histogram with each bin showing yield (or efficiency) for progressive cuts.
              @@ -579,6 +583,40 @@

              +

              ◆ GetHistBinningTuple()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.GetHistBinningTuple ( h)
              +
              + +

              Gets the binning information for a histogram and returns it as a tuple ordered like the arguements to construct a new histogram.

              +

              Supports TH1, TH2, and TH3.

              +
              Parameters
              + + +
              h(TH1): Input histogram from which to get the binning information.
              +
              +
              +
              Exceptions
              + + +
              TypeErrorIf histogram does not derive from TH1.
              +
              +
              +
              Returns
              tuple(tuple, int): First element of return is the binning and the second element is the dimensionality.
              +
              diff --git a/docs/_plot_8py.html b/docs/_plot_8py.html index b6cbfe6..79c78d5 100644 --- a/docs/_plot_8py.html +++ b/docs/_plot_8py.html @@ -77,16 +77,16 @@ - + - + - + - +

              Functions

              def TIMBER.Tools.Plot.CompareShapes (outfilename, year, prettyvarname, bkgs={}, signals={}, names={}, colors={}, scale=True, stackBkg=False)
              def CompareShapes (outfilename, year, prettyvarname, bkgs={}, signals={}, names={}, colors={}, scale=True, stackBkg=False)
               Create a plot that compares the shapes of backgrounds versus signal. More...
               
              def TIMBER.Tools.Plot.MoneyPlots (name, histlist, bkglist=[], signals=[], colors=[], titles=[], logy=False, xtitle='', ytitle='', dataOff=False, datastyle='pe')
              def MoneyPlots (name, histlist, bkglist=[], signals=[], colors=[], titles=[], logy=False, xtitle='', ytitle='', dataOff=False, datastyle='pe')
               Tool to produce plots quickly as .root, .pdf, .png, etc. More...
               
              def TIMBER.Tools.Plot.MakePullPlot (data, bkg)
              def MakePullPlot (data, bkg)
               Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature. More...
               
              def TIMBER.Tools.Plot.MakeUpDown (hist)
              def MakeUpDown (hist)
               Creates up and down variations of a histogram based on its per-bin errors. More...
               
              diff --git a/docs/class_p_d_fweight__uncert.html b/docs/class_p_d_fweight__uncert.html index 2bbe1f2..0e7debf 100644 --- a/docs/class_p_d_fweight__uncert.html +++ b/docs/class_p_d_fweight__uncert.html @@ -71,12 +71,12 @@ - - - + - +

              Public Member Functions

              +
               PDFweight_uncert (int lhaID, bool ignoreEmptyBranch=false)
               
              +
               
              std::vector< float > eval (RVec< float > LHEPdfWeight)
               
               
              The documentation for this class was generated from the following file:
              • TIMBER/Framework/src/PDFweight_uncert.cc
                • diff --git a/docs/class_s_j_btag___s_f.html b/docs/class_s_j_btag___s_f.html index fdbccdf..a6c67e1 100644 --- a/docs/class_s_j_btag___s_f.html +++ b/docs/class_s_j_btag___s_f.html @@ -71,12 +71,12 @@ - - - + - +

                Public Member Functions

                +
                 SJBtag_SF (int year, std::string tagger, std::string op_string)
                 
                +
                 
                RVec< float > eval (float pt, float eta)
                 
                 
                The documentation for this class was generated from the following file:
                • TIMBER/Framework/src/SJBtag_SF.cc
                  • diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html index 4b8a77f..fc05f99 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction-members.html @@ -66,20 +66,20 @@
                  -
                  TIMBER.Analyzer.Correction Member List
                  +
                  Correction Member List
                  -

                  This is the complete list of members for TIMBER.Analyzer.Correction, including all inherited members.

                  +

                  This is the complete list of members for Correction, including all inherited members.

                  - - - - - - - - + + + + + + + +
                  __init__(self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)TIMBER.Analyzer.Correction
                  Clone(self, name, newMainFunc=None)TIMBER.Analyzer.Correction
                  GetCall(self, inArgs=[])TIMBER.Analyzer.Correction
                  GetFuncNames(self)TIMBER.Analyzer.Correction
                  GetMainFunc(self)TIMBER.Analyzer.Correction
                  GetType(self)TIMBER.Analyzer.Correction
                  MakeCall(self, inArgs=[])TIMBER.Analyzer.Correction
                  nameTIMBER.Analyzer.Correction
                  __init__(self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)Correction
                  Clone(self, name, newMainFunc=None)Correction
                  GetCall(self, inArgs=[])Correction
                  GetFuncNames(self)Correction
                  GetMainFunc(self)Correction
                  GetType(self)Correction
                  MakeCall(self, inArgs=[])Correction
                  nameCorrection
                  diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html index dea9945..521f02b 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_correction.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.Correction Class Reference +TIMBER: Correction Class Reference @@ -70,69 +70,69 @@ Public Attributes | List of all members
                  -
                  TIMBER.Analyzer.Correction Class Reference
                  +
                  Correction Class Reference

                  Correction class to handle corrections produced by C++ modules. More...

                  -Inheritance diagram for TIMBER.Analyzer.Correction:
                  +Inheritance diagram for Correction:
                  -
                  Inheritance graph
                  +
                  Inheritance graph
                  [legend]
                  -Collaboration diagram for TIMBER.Analyzer.Correction:
                  +Collaboration diagram for Correction:
                  -
                  Collaboration graph
                  +
                  Collaboration graph
                  [legend]
                  - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + +

                  Public Member Functions

                  def __init__ (self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)
                   Constructor. More...
                   
                  def Clone (self, name, newMainFunc=None)
                   Makes a clone of current instance. More...
                   
                  def MakeCall (self, inArgs=[])
                   Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input. More...
                   
                  def GetCall (self, inArgs=[])
                   Gets the call to the method to be evaluated per-event. More...
                   
                  def GetMainFunc (self)
                   Gets full main function name. More...
                   
                  def GetType (self)
                   Gets Correction type. More...
                   
                  def GetFuncNames (self)
                   Gets list of function names in C++ script. More...
                   
                  def __init__ (self, name, script, constructor=[], mainFunc='eval', corrtype='', columnList=None, isClone=False)
                   Constructor. More...
                   
                  def Clone (self, name, newMainFunc=None)
                   Makes a clone of current instance. More...
                   
                  def MakeCall (self, inArgs=[])
                   Makes the call (stored in class instance) to the method with the branch/column names deduced or added from input. More...
                   
                  def GetCall (self, inArgs=[])
                   Gets the call to the method to be evaluated per-event. More...
                   
                  def GetMainFunc (self)
                   Gets full main function name. More...
                   
                  def GetType (self)
                   Gets Correction type. More...
                   
                  def GetFuncNames (self)
                   Gets list of function names in C++ script. More...
                   
                  - - - + + +

                  Public Attributes

                  - name
                   str Correction name
                   
                  + name
                   str Correction name
                   

                  Detailed Description

                  Correction class to handle corrections produced by C++ modules.

                  Uses clang in python to parse the C++ code and determine function names, namespaces, and argument names and types.

                  Writing the C++ modules has two requirements:

                  -

                  (1) the desired branch/column names must be used as the argument variable names to allow the framework to automatically determine what branch/column to use in GetCall(),

                  +

                  (1) the desired branch/column names must be used as the argument variable names to allow the framework to automatically determine what branch/column to use in GetCall(),

                  (2) the return must be a vector ordered as <nominal, up, down> for "weight" type and <up, down> for "uncert" type.

                  Constructor & Destructor Documentation

                  - -

                  ◆ __init__()

                  + +

                  ◆ __init__()

                  - + @@ -204,14 +204,14 @@

                  Member Function Documentation

                  - -

                  ◆ Clone()

                  + +

                  ◆ Clone()

                  def TIMBER.Analyzer.Correction.__init__ def __init__ (   self,
                  - + @@ -251,14 +251,14 @@

                  -

                  ◆ GetCall()

                  + +

                  ◆ GetCall()

                  def TIMBER.Analyzer.Correction.Clone def Clone (   self,
                  - + @@ -280,7 +280,7 @@

                  Parameters

                  def TIMBER.Analyzer.Correction.GetCall def GetCall (   self,
                  - +
                  inArgs(list, optional): Args to use for eval if MakeCall() has not already been called. Defaults to []. If MakeCall() has not already been called and inArgs == [], then the arguments to the method will be deduced from the C++ method definition argument names.
                  inArgs(list, optional): Args to use for eval if MakeCall() has not already been called. Defaults to []. If MakeCall() has not already been called and inArgs == [], then the arguments to the method will be deduced from the C++ method definition argument names.
              @@ -290,14 +290,14 @@

              -

              ◆ GetFuncNames()

              + +

              ◆ GetFuncNames()

              - + @@ -311,14 +311,14 @@

              -

              ◆ GetMainFunc()

              + +

              ◆ GetMainFunc()

              def TIMBER.Analyzer.Correction.GetFuncNames def GetFuncNames (   self)
              - + @@ -334,14 +334,14 @@

              -

              ◆ GetType()

              + +

              ◆ GetType()

              def TIMBER.Analyzer.Correction.GetMainFunc def GetMainFunc (   self)
              - + @@ -357,14 +357,14 @@

              -

              ◆ MakeCall()

              + +

              ◆ MakeCall()

              def TIMBER.Analyzer.Correction.GetType def GetType (   self)
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              -
              TIMBER.Analyzer.CutGroup Member List
              +
              CutGroup Member List
              -

              This is the complete list of members for TIMBER.Analyzer.CutGroup, including all inherited members.

              +

              This is the complete list of members for CutGroup, including all inherited members.

              def TIMBER.Analyzer.Correction.MakeCall def MakeCall (   self,
              - - - - - - - - - - - - + + + + + + + + + + + +
              __add__(self, other)TIMBER.Analyzer.Group
              __getitem__(self, key)TIMBER.Analyzer.Group
              __init__(self, name)TIMBER.Analyzer.CutGroup
              __setitem__(self, key, value)TIMBER.Analyzer.Group
              Add(self, name, item, copy=False)TIMBER.Analyzer.Group
              Clone(self, name)TIMBER.Analyzer.Group
              Drop(self, name, copy=False)TIMBER.Analyzer.Group
              itemsTIMBER.Analyzer.Group
              keys(self)TIMBER.Analyzer.Group
              nameTIMBER.Analyzer.Group
              typeTIMBER.Analyzer.CutGroup
              values(self)TIMBER.Analyzer.Group
              __add__(self, other)Group
              __getitem__(self, key)Group
              __init__(self, name)CutGroup
              __setitem__(self, key, value)Group
              Add(self, name, item, copy=False)Group
              Clone(self, name)Group
              Drop(self, name, copy=False)Group
              itemsGroup
              keys(self)Group
              nameGroup
              typeCutGroup
              values(self)Group
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html index 1ed1b25..5dd1c38 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.CutGroup Class Reference +TIMBER: CutGroup Class Reference @@ -70,90 +70,90 @@ Public Attributes | List of all members
              -
              TIMBER.Analyzer.CutGroup Class Reference
              +
              CutGroup Class Reference

              Stores Cut actions. More...

              -Inheritance diagram for TIMBER.Analyzer.CutGroup:
              +Inheritance diagram for CutGroup:
              -
              Inheritance graph
              - - +
              Inheritance graph
              + +
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.CutGroup:
              +Collaboration diagram for CutGroup:
              -
              Collaboration graph
              - - +
              Collaboration graph
              + +
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, name)
               Constructor. More...
               
              - Public Member Functions inherited from TIMBER.Analyzer.Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              def __init__ (self, name)
               Constructor. More...
               
              - Public Member Functions inherited from Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              - - - - - - - - - - - - - + + + + + + + + + + + + +

              Public Attributes

               type
               Set to 'cut' so group is treated as cut/filter actions. More...
               
              - Public Attributes inherited from TIMBER.Analyzer.Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               
               type
               Set to 'cut' so group is treated as cut/filter actions. More...
               
              - Public Attributes inherited from Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               

              Detailed Description

              Stores Cut actions.

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -183,14 +183,14 @@

              Member Data Documentation

              - -

              ◆ type

              + +

              ◆ type

              def TIMBER.Analyzer.CutGroup.__init__ def __init__ (   self,
              - +
              TIMBER.Analyzer.CutGroup.typetype
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.map b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.map index 5e653ff..1514145 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.map +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.map @@ -1,3 +1,3 @@ - - + + diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.md5 b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.md5 index 3203687..d8ddc86 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.md5 +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.md5 @@ -1 +1 @@ -6444eb95e3b1f198985f7610db7ce5bf \ No newline at end of file +c142ca2c1543389d416b5faf9f8bd7f0 \ No newline at end of file diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.png b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group__coll__graph.png index 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a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group-members.html @@ -66,24 +66,24 @@
              -
              TIMBER.Analyzer.Group Member List
              +
              Group Member List
              -

              This is the complete list of members for TIMBER.Analyzer.Group, including all inherited members.

              +

              This is the complete list of members for Group, including all inherited members.

              - - - - - - - - - - - - + + + + + + + + + + + +
              __add__(self, other)TIMBER.Analyzer.Group
              __getitem__(self, key)TIMBER.Analyzer.Group
              __init__(self, name)TIMBER.Analyzer.Group
              __setitem__(self, key, value)TIMBER.Analyzer.Group
              Add(self, name, item, copy=False)TIMBER.Analyzer.Group
              Clone(self, name)TIMBER.Analyzer.Group
              Drop(self, name, copy=False)TIMBER.Analyzer.Group
              itemsTIMBER.Analyzer.Group
              keys(self)TIMBER.Analyzer.Group
              nameTIMBER.Analyzer.Group
              typeTIMBER.Analyzer.Group
              values(self)TIMBER.Analyzer.Group
              __add__(self, other)Group
              __getitem__(self, key)Group
              __init__(self, name)Group
              __setitem__(self, key, value)Group
              Add(self, name, item, copy=False)Group
              Clone(self, name)Group
              Drop(self, name, copy=False)Group
              itemsGroup
              keys(self)Group
              nameGroup
              typeGroup
              values(self)Group
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html index cd9e766..259e7af 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.Group Class Reference +TIMBER: Group Class Reference @@ -70,81 +70,81 @@ Public Attributes | List of all members
              -
              TIMBER.Analyzer.Group Class Reference
              +
              Group Class Reference

              Organizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items. More...

              -Inheritance diagram for TIMBER.Analyzer.Group:
              +Inheritance diagram for Group:
              -
              Inheritance graph
              - - - - +
              Inheritance graph
              + + + +
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.Group:
              +Collaboration diagram for Group:
              -
              Collaboration graph
              +
              Collaboration graph
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              - - - - - - - - - + + + + + + + + +

              Public Attributes

               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               

              Detailed Description

              Organizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items.

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -169,14 +169,14 @@

              Member Function Documentation

              - -

              ◆ __add__()

              + +

              ◆ __add__()

              def TIMBER.Analyzer.Group.__init__ def __init__ (   self,
              - + @@ -196,7 +196,7 @@

              Adds two Groups together.

              -

              Items in other override duplicates. If groups do not have matching type, a generic Group will be returned. Ex. newgroup = group1 + group2

              +

              Items in other override duplicates. If groups do not have matching type, a generic Group will be returned. Ex. newgroup = group1 + group2

              Parameters

              def TIMBER.Analyzer.Group.__add__ def __add__ (   self,
              @@ -209,14 +209,14 @@

              -

              ◆ __getitem__()

              + +

              ◆ __getitem__()

              other(Group): Group to add to current Group.
              - + @@ -249,14 +249,14 @@

              -

              ◆ __setitem__()

              + +

              ◆ __setitem__()

              def TIMBER.Analyzer.Group.__getitem__ def __getitem__ (   self,
              - + @@ -293,14 +293,14 @@

              -

              ◆ Add()

              + +

              ◆ Add()

              def TIMBER.Analyzer.Group.__setitem__ def __setitem__ (   self,
              - + @@ -340,14 +340,14 @@

              -

              ◆ Clone()

              + +

              ◆ Clone()

              def TIMBER.Analyzer.Group.Add def Add (   self,
              - + @@ -379,14 +379,14 @@

              -

              ◆ Drop()

              + +

              ◆ Drop()

              def TIMBER.Analyzer.Group.Clone def Clone (   self,
              - + @@ -419,14 +419,14 @@

              -

              ◆ keys()

              + +

              ◆ keys()

              def TIMBER.Analyzer.Group.Drop def Drop (   self,
              - + @@ -442,14 +442,14 @@

              -

              ◆ values()

              + +

              ◆ values()

              def TIMBER.Analyzer.Group.keys def keys (   self)
              - + @@ -466,14 +466,14 @@

              Member Data Documentation

              - -

              ◆ items

              + +

              ◆ items

              def TIMBER.Analyzer.Group.values def values (   self)
              - +
              TIMBER.Analyzer.Group.itemsitems
              @@ -483,14 +483,14 @@

              -

              ◆ name

              + +

              ◆ name

              - +
              TIMBER.Analyzer.Group.namename
              @@ -500,14 +500,14 @@

              -

              ◆ type

              + +

              ◆ type

              - +
              TIMBER.Analyzer.Group.typetype
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              -
              TIMBER.Analyzer.HistGroup Member List
              +
              HistGroup Member List
              -

              This is the complete list of members for TIMBER.Analyzer.HistGroup, including all inherited members.

              +

              This is the complete list of members for HistGroup, including all inherited members.

              - - - - - - - - - - - - - + + + + + + + + + + + + +
              __add__(self, other)TIMBER.Analyzer.Group
              __getitem__(self, key)TIMBER.Analyzer.Group
              __init__(self, name)TIMBER.Analyzer.HistGroup
              __setitem__(self, key, value)TIMBER.Analyzer.Group
              Add(self, name, item, copy=False)TIMBER.Analyzer.Group
              Clone(self, name)TIMBER.Analyzer.Group
              Do(self, THmethod, argsTuple=())TIMBER.Analyzer.HistGroup
              Drop(self, name, copy=False)TIMBER.Analyzer.Group
              itemsTIMBER.Analyzer.Group
              keys(self)TIMBER.Analyzer.Group
              nameTIMBER.Analyzer.Group
              typeTIMBER.Analyzer.HistGroup
              values(self)TIMBER.Analyzer.Group
              __add__(self, other)Group
              __getitem__(self, key)Group
              __init__(self, name)HistGroup
              __setitem__(self, key, value)Group
              Add(self, name, item, copy=False)Group
              Clone(self, name)Group
              Do(self, THmethod, argsTuple=())HistGroup
              Drop(self, name, copy=False)Group
              itemsGroup
              keys(self)Group
              nameGroup
              typeHistGroup
              values(self)Group
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html index 8ce4dd2..717bea9 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.HistGroup Class Reference +TIMBER: HistGroup Class Reference @@ -70,93 +70,93 @@ Public Attributes | List of all members

              -
              TIMBER.Analyzer.HistGroup Class Reference
              +
              HistGroup Class Reference

              Stores histograms with dedicated function to use TH1/2/3 methods in a batch. More...

              -Inheritance diagram for TIMBER.Analyzer.HistGroup:
              +Inheritance diagram for HistGroup:
              -
              Inheritance graph
              - - +
              Inheritance graph
              + +
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.HistGroup:
              +Collaboration diagram for HistGroup:
              -
              Collaboration graph
              - - +
              Collaboration graph
              + +
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, name)
               Constructor. More...
               
              def Do (self, THmethod, argsTuple=())
               Batch act on histograms using ROOT TH1/2/3 methods. More...
               
              - Public Member Functions inherited from TIMBER.Analyzer.Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              def __init__ (self, name)
               Constructor. More...
               
              def Do (self, THmethod, argsTuple=())
               Batch act on histograms using ROOT TH1/2/3 methods. More...
               
              - Public Member Functions inherited from Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              - - - - - - - - - - - - - + + + + + + + + + + + + +

              Public Attributes

               type
               Set to 'hist' so group is treated as histograms. More...
               
              - Public Attributes inherited from TIMBER.Analyzer.Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               
               type
               Set to 'hist' so group is treated as histograms. More...
               
              - Public Attributes inherited from Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               

              Detailed Description

              Stores histograms with dedicated function to use TH1/2/3 methods in a batch.

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -186,14 +186,14 @@

              Member Function Documentation

              - -

              ◆ Do()

              + +

              ◆ Do()

              def TIMBER.Analyzer.HistGroup.__init__ def __init__ (   self,
              - + @@ -231,14 +231,14 @@

              Member Data Documentation

              - -

              ◆ type

              + +

              ◆ type

              def TIMBER.Analyzer.HistGroup.Do def Do (   self,
              - +
              TIMBER.Analyzer.HistGroup.typetype
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              -
              TIMBER.Analyzer.Node Member List
              +
              Node Member List
              -

              This is the complete list of members for TIMBER.Analyzer.Node, including all inherited members.

              +

              This is the complete list of members for Node, including all inherited members.

              - - - - - - - - - - - - - + + + + + + + + + + + + +
              __init__(self, name, DataFrame, action='', children=[])TIMBER.Analyzer.Node
              actionTIMBER.Analyzer.Node
              Apply(self, actionGroupList)TIMBER.Analyzer.Node
              childrenTIMBER.Analyzer.Node
              Clone(self, name='')TIMBER.Analyzer.Node
              Cut(self, name, cut)TIMBER.Analyzer.Node
              DataFrameTIMBER.Analyzer.Node
              Define(self, name, var)TIMBER.Analyzer.Node
              Discriminate(self, name, discriminator)TIMBER.Analyzer.Node
              nameTIMBER.Analyzer.Node
              SetChild(self, child, overwrite=False)TIMBER.Analyzer.Node
              SetChildren(self, children, overwrite=False)TIMBER.Analyzer.Node
              Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.Node
              __init__(self, name, DataFrame, action='', children=[])Node
              actionNode
              Apply(self, actionGroupList)Node
              childrenNode
              Clone(self, name='')Node
              Cut(self, name, cut)Node
              DataFrameNode
              Define(self, name, var)Node
              Discriminate(self, name, discriminator)Node
              nameNode
              SetChild(self, child, overwrite=False)Node
              SetChildren(self, children, overwrite=False)Node
              Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')Node
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html index 22c054a..73312b9 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.Node Class Reference +TIMBER: Node Class Reference @@ -70,83 +70,83 @@ Public Attributes | List of all members
              -
              TIMBER.Analyzer.Node Class Reference
              +
              Node Class Reference

              Class to represent nodes in the DataFrame processing graph. More...

              -Inheritance diagram for TIMBER.Analyzer.Node:
              +Inheritance diagram for Node:
              -
              Inheritance graph
              +
              Inheritance graph
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.Node:
              +Collaboration diagram for Node:
              -
              Collaboration graph
              +
              Collaboration graph
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, name, DataFrame, action='', children=[])
               Constructor. More...
               
              def Clone (self, name='')
               Clones Node instance without child information and with new name if specified. More...
               
              def SetChild (self, child, overwrite=False)
               Set one of child for the node. More...
               
              def SetChildren (self, children, overwrite=False)
               Set multiple children for the node. More...
               
              def Define (self, name, var)
               Produces a new Node with the provided variable/column added. More...
               
              def Cut (self, name, cut)
               Produces a new Node with the provided cut/filter applied. More...
               
              def Discriminate (self, name, discriminator)
               Produces a dictionary with two new Nodes made by forking this Node based upon a discriminator being True or False. More...
               
              def Apply (self, actionGroupList)
               Applies a single CutGroup/VarGroup or an ordered list of Groups to this Node to produce a new final Node. More...
               
              def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
               Takes a snapshot of the RDataFrame corresponding to this Node. More...
               
              def __init__ (self, name, DataFrame, action='', children=[])
               Constructor. More...
               
              def Clone (self, name='')
               Clones Node instance without child information and with new name if specified. More...
               
              def SetChild (self, child, overwrite=False)
               Set one of child for the node. More...
               
              def SetChildren (self, children, overwrite=False)
               Set multiple children for the node. More...
               
              def Define (self, name, var)
               Produces a new Node with the provided variable/column added. More...
               
              def Cut (self, name, cut)
               Produces a new Node with the provided cut/filter applied. More...
               
              def Discriminate (self, name, discriminator)
               Produces a dictionary with two new Nodes made by forking this Node based upon a discriminator being True or False. More...
               
              def Apply (self, actionGroupList)
               Applies a single CutGroup/VarGroup or an ordered list of Groups to this Node to produce a new final Node. More...
               
              def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
               Takes a snapshot of the RDataFrame corresponding to this Node. More...
               
              - - - - - - - - - - - - + + + + + + + + + + + +

              Public Attributes

              - DataFrame
               DataFrame for the Node.
               
              - name
               Name of the Node.
               
              - action
               Action performed to create this Node.
               
               children
               List of child nodes. More...
               
              + DataFrame
               DataFrame for the Node.
               
              + name
               Name of the Node.
               
              + action
               Action performed to create this Node.
               
               children
               List of child nodes. More...
               

              Detailed Description

              Class to represent nodes in the DataFrame processing graph.

              Can make new nodes via Define, Cut, and Discriminate and setup relations between nodes (done automatically via Define, Cut, Discriminate)

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -199,14 +199,14 @@

              Member Function Documentation

              - -

              ◆ Apply()

              + +

              ◆ Apply()

              def TIMBER.Analyzer.Node.__init__ def __init__ (   self,
              - + @@ -244,14 +244,14 @@

              -

              ◆ Clone()

              + +

              ◆ Clone()

              def TIMBER.Analyzer.Node.Apply def Apply (   self,
              - + @@ -283,14 +283,14 @@

              -

              ◆ Cut()

              + +

              ◆ Cut()

              def TIMBER.Analyzer.Node.Clone def Clone (   self,
              - + @@ -329,14 +329,14 @@

              -

              ◆ Define()

              + +

              ◆ Define()

              def TIMBER.Analyzer.Node.Cut def Cut (   self,
              - + @@ -375,14 +375,14 @@

              -

              ◆ Discriminate()

              + +

              ◆ Discriminate()

              def TIMBER.Analyzer.Node.Define def Define (   self,
              - + @@ -421,14 +421,14 @@

              -

              ◆ SetChild()

              + +

              ◆ SetChild()

              def TIMBER.Analyzer.Node.Discriminate def Discriminate (   self,
              - + @@ -470,14 +470,14 @@

              -

              ◆ SetChildren()

              + +

              ◆ SetChildren()

              def TIMBER.Analyzer.Node.SetChild def SetChild (   self,
              - + @@ -519,14 +519,14 @@

              -

              ◆ Snapshot()

              + +

              ◆ Snapshot()

              def TIMBER.Analyzer.Node.SetChildren def SetChildren (   self,
              - + @@ -588,14 +588,14 @@

              Member Data Documentation

              - -

              ◆ children

              + +

              ◆ children

              def TIMBER.Analyzer.Node.Snapshot def Snapshot (   self,
              - +
              TIMBER.Analyzer.Node.childrenchildren
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5d24a87..65c7b1e 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group-members.html @@ -66,24 +66,24 @@
              -
              TIMBER.Analyzer.VarGroup Member List
              +
              VarGroup Member List
              -

              This is the complete list of members for TIMBER.Analyzer.VarGroup, including all inherited members.

              +

              This is the complete list of members for VarGroup, including all inherited members.

              - - - - - - - - - - - - + + + + + + + + + + + +
              __add__(self, other)TIMBER.Analyzer.Group
              __getitem__(self, key)TIMBER.Analyzer.Group
              __init__(self, name)TIMBER.Analyzer.VarGroup
              __setitem__(self, key, value)TIMBER.Analyzer.Group
              Add(self, name, item, copy=False)TIMBER.Analyzer.Group
              Clone(self, name)TIMBER.Analyzer.Group
              Drop(self, name, copy=False)TIMBER.Analyzer.Group
              itemsTIMBER.Analyzer.Group
              keys(self)TIMBER.Analyzer.Group
              nameTIMBER.Analyzer.Group
              typeTIMBER.Analyzer.VarGroup
              values(self)TIMBER.Analyzer.Group
              __add__(self, other)Group
              __getitem__(self, key)Group
              __init__(self, name)VarGroup
              __setitem__(self, key, value)Group
              Add(self, name, item, copy=False)Group
              Clone(self, name)Group
              Drop(self, name, copy=False)Group
              itemsGroup
              keys(self)Group
              nameGroup
              typeVarGroup
              values(self)Group
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html index 0ef5613..abccffa 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.VarGroup Class Reference +TIMBER: VarGroup Class Reference @@ -70,90 +70,90 @@ Public Attributes | List of all members
              -
              TIMBER.Analyzer.VarGroup Class Reference
              +
              VarGroup Class Reference

              Stores Define actions. More...

              -Inheritance diagram for TIMBER.Analyzer.VarGroup:
              +Inheritance diagram for VarGroup:
              -
              Inheritance graph
              - - +
              Inheritance graph
              + +
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.VarGroup:
              +Collaboration diagram for VarGroup:
              -
              Collaboration graph
              - - +
              Collaboration graph
              + +
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, name)
               Constructor. More...
               
              - Public Member Functions inherited from TIMBER.Analyzer.Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              def __init__ (self, name)
               Constructor. More...
               
              - Public Member Functions inherited from Group
              def __init__ (self, name)
               Constructor. More...
               
              def Add (self, name, item, copy=False)
               Add item to Group with a name. More...
               
              def Drop (self, name, copy=False)
               Drop item from Group with provided name/key. More...
               
              def Clone (self, name)
               Clone the current group with a new name. More...
               
              def __add__ (self, other)
               Adds two Groups together. More...
               
              def keys (self)
               Gets list of keys from Group. More...
               
              def values (self)
               Gets list of values from Group. More...
               
              def __setitem__ (self, key, value)
               Set key-value pair as you would with dictionary. More...
               
              def __getitem__ (self, key)
               Get value from key as you would with dictionary. More...
               
              - - - - - - - - - - - - - + + + + + + + + + + + + +

              Public Attributes

               type
               Set to 'var' so group is treated as column definition actions. More...
               
              - Public Attributes inherited from TIMBER.Analyzer.Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               
               type
               Set to 'var' so group is treated as column definition actions. More...
               
              - Public Attributes inherited from Group
               name
               str More...
               
               items
               OrderedDict() More...
               
               type
               string More...
               

              Detailed Description

              Stores Define actions.

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -183,14 +183,14 @@

              Member Data Documentation

              - -

              ◆ type

              + +

              ◆ type

              def TIMBER.Analyzer.VarGroup.__init__ def __init__ (   self,
              - +
              TIMBER.Analyzer.VarGroup.typetype
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              -
              TIMBER.Analyzer.analyzer Member List
              +
              analyzer Member List
              -

              This is the complete list of members for TIMBER.Analyzer.analyzer, including all inherited members.

              +

              This is the complete list of members for analyzer, including all inherited members.

              - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
              __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs")TIMBER.Analyzer.analyzer
              ActiveNodeTIMBER.Analyzer.analyzer
              AddCorrection(self, correction, evalArgs=[], node=None)TIMBER.Analyzer.analyzer
              AddCorrections(self, correctionList, node=None)TIMBER.Analyzer.analyzer
              AllNodesTIMBER.Analyzer.analyzer
              Apply(self, actionGroupList, node=None, trackEach=True)TIMBER.Analyzer.analyzer
              BaseNodeTIMBER.Analyzer.analyzer
              CorrectionsTIMBER.Analyzer.analyzer
              Cut(self, name, cuts, node=None)TIMBER.Analyzer.analyzer
              DataFrame(self)TIMBER.Analyzer.analyzer
              Define(self, name, variables, node=None)TIMBER.Analyzer.analyzer
              Discriminate(self, name, discriminator, node=None, passAsActiveNode=None)TIMBER.Analyzer.analyzer
              DrawTemplates(self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')TIMBER.Analyzer.analyzer
              FilterColumnNames(self, columns, node=None)TIMBER.Analyzer.analyzer
              genEventCountTIMBER.Analyzer.analyzer
              GetActiveNode(self)TIMBER.Analyzer.analyzer
              GetBaseNode(self)TIMBER.Analyzer.analyzer
              GetCorrectionNames(self)TIMBER.Analyzer.analyzer
              GetFileName(self)TIMBER.Analyzer.analyzer
              GetFlagString(self, flagList)TIMBER.Analyzer.analyzer
              GetTrackedNodeNames(self)TIMBER.Analyzer.analyzer
              GetTriggerString(self, trigList)TIMBER.Analyzer.analyzer
              isDataTIMBER.Analyzer.analyzer
              lhaidTIMBER.Analyzer.analyzer
              MakeTemplateHistos(self, templateHist, variables, node=None)TIMBER.Analyzer.analyzer
              MakeWeightCols(self, node=None, correctionNames=None, dropList=[])TIMBER.Analyzer.analyzer
              Nminus1(self, node, cutgroup)TIMBER.Analyzer.analyzer
              preV6TIMBER.Analyzer.analyzer
              PrintNodeTree(self, outfilename, verbose=False)TIMBER.Analyzer.analyzer
              SetActiveNode(self, node)TIMBER.Analyzer.analyzer
              Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')TIMBER.Analyzer.analyzer
              TrackNode(self, node)TIMBER.Analyzer.analyzer
              __init__(self, fileName, eventsTreeName="Events", runTreeName="Runs")analyzer
              ActiveNodeanalyzer
              AddCorrection(self, correction, evalArgs=[], node=None)analyzer
              AddCorrections(self, correctionList, node=None)analyzer
              AllNodesanalyzer
              Apply(self, actionGroupList, node=None, trackEach=True)analyzer
              BaseNodeanalyzer
              Correctionsanalyzer
              Cut(self, name, cuts, node=None)analyzer
              DataFrame(self)analyzer
              Define(self, name, variables, node=None)analyzer
              Discriminate(self, name, discriminator, node=None, passAsActiveNode=None)analyzer
              DrawTemplates(self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')analyzer
              FilterColumnNames(self, columns, node=None)analyzer
              genEventCountanalyzer
              GetActiveNode(self)analyzer
              GetBaseNode(self)analyzer
              GetCorrectionNames(self)analyzer
              GetFileName(self)analyzer
              GetFlagString(self, flagList)analyzer
              GetTrackedNodeNames(self)analyzer
              GetTriggerString(self, trigList)analyzer
              isDataanalyzer
              lhaidanalyzer
              MakeTemplateHistos(self, templateHist, variables, node=None)analyzer
              MakeWeightCols(self, node=None, correctionNames=None, dropList=[])analyzer
              Nminus1(self, node, cutgroup)analyzer
              preV6analyzer
              PrintNodeTree(self, outfilename, verbose=False)analyzer
              SetActiveNode(self, node)analyzer
              Snapshot(self, columns, outfilename, treename, lazy=False, openOption='RECREATE')analyzer
              TrackNode(self, node)analyzer
              diff --git a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html index f4a49b8..3d8e703 100644 --- a/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html +++ b/docs/class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html @@ -5,7 +5,7 @@ -TIMBER: TIMBER.Analyzer.analyzer Class Reference +TIMBER: analyzer Class Reference @@ -70,137 +70,137 @@ Public Attributes | List of all members
              -
              TIMBER.Analyzer.analyzer Class Reference
              +
              analyzer Class Reference

              Main class for TIMBER. More...

              -Inheritance diagram for TIMBER.Analyzer.analyzer:
              +Inheritance diagram for analyzer:
              -
              Inheritance graph
              +
              Inheritance graph
              [legend]
              -Collaboration diagram for TIMBER.Analyzer.analyzer:
              +Collaboration diagram for analyzer:
              -
              Collaboration graph
              +
              Collaboration graph
              [legend]
              - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

              Public Member Functions

              def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
               Constructor. More...
               
              def DataFrame (self)
               DataFrame of the ActiveNode. More...
               
              def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
               
              def SetActiveNode (self, node)
               Sets the active node. More...
               
              def GetActiveNode (self)
               Get the active node. More...
               
              def GetBaseNode (self)
               Get the base node. More...
               
              def TrackNode (self, node)
               Add a node to track. More...
               
              def GetTrackedNodeNames (self)
               Gets the names of the nodes currently being tracked. More...
               
              def GetCorrectionNames (self)
               Get names of all corrections being tracked. More...
               
              def FilterColumnNames (self, columns, node=None)
               Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node. More...
               
              def GetTriggerString (self, trigList)
               Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string. More...
               
              def GetFlagString (self, flagList)
               Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string. More...
               
              def GetFileName (self)
               Get input file name. More...
               
              def Cut (self, name, cuts, node=None)
               Apply a cut/filter to a provided node or the ActiveNode by default. More...
               
              def Define (self, name, variables, node=None)
               Defines a variable/column on top of a provided node or the ActiveNode by default. More...
               
              def Apply (self, actionGroupList, node=None, trackEach=True)
               Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default. More...
               
              def Discriminate (self, name, discriminator, node=None, passAsActiveNode=None)
               Forks a node based upon a discriminator being True or False (ActiveNode by default). More...
               
              def AddCorrection (self, correction, evalArgs=[], node=None)
               Add a Correction to track. More...
               
              def AddCorrections (self, correctionList, node=None)
               Add multiple Corrections to track. More...
               
              def MakeWeightCols (self, node=None, correctionNames=None, dropList=[])
               Makes columns/variables to store total weights based on the Corrections that have been added. More...
               
              def MakeTemplateHistos (self, templateHist, variables, node=None)
               Generates the uncertainty template histograms based on the weights created by MakeWeightCols(). More...
               
              def DrawTemplates (self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')
               Draw the template uncertainty histograms created by MakeTemplateHistos(). More...
               
              def Nminus1 (self, node, cutgroup)
               Create an N-1 tree structure of nodes building off of node with the N cuts from cutgroup. More...
               
              def PrintNodeTree (self, outfilename, verbose=False)
               Print a PDF image of the node structure of the analysis. More...
               
              def __init__ (self, fileName, eventsTreeName="Events", runTreeName="Runs")
               Constructor. More...
               
              def DataFrame (self)
               DataFrame of the ActiveNode. More...
               
              def Snapshot (self, columns, outfilename, treename, lazy=False, openOption='RECREATE')
               
              def SetActiveNode (self, node)
               Sets the active node. More...
               
              def GetActiveNode (self)
               Get the active node. More...
               
              def GetBaseNode (self)
               Get the base node. More...
               
              def TrackNode (self, node)
               Add a node to track. More...
               
              def GetTrackedNodeNames (self)
               Gets the names of the nodes currently being tracked. More...
               
              def GetCorrectionNames (self)
               Get names of all corrections being tracked. More...
               
              def FilterColumnNames (self, columns, node=None)
               Takes a list of possible columns and returns only those that exist in the RDataFrame of the supplied node. More...
               
              def GetTriggerString (self, trigList)
               Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string. More...
               
              def GetFlagString (self, flagList)
               Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string. More...
               
              def GetFileName (self)
               Get input file name. More...
               
              def Cut (self, name, cuts, node=None)
               Apply a cut/filter to a provided node or the ActiveNode by default. More...
               
              def Define (self, name, variables, node=None)
               Defines a variable/column on top of a provided node or the ActiveNode by default. More...
               
              def Apply (self, actionGroupList, node=None, trackEach=True)
               Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default. More...
               
              def Discriminate (self, name, discriminator, node=None, passAsActiveNode=None)
               Forks a node based upon a discriminator being True or False (ActiveNode by default). More...
               
              def AddCorrection (self, correction, evalArgs=[], node=None)
               Add a Correction to track. More...
               
              def AddCorrections (self, correctionList, node=None)
               Add multiple Corrections to track. More...
               
              def MakeWeightCols (self, node=None, correctionNames=None, dropList=[])
               Makes columns/variables to store total weights based on the Corrections that have been added. More...
               
              def MakeTemplateHistos (self, templateHist, variables, node=None)
               Generates the uncertainty template histograms based on the weights created by MakeWeightCols(). More...
               
              def DrawTemplates (self, hGroup, saveLocation, projection='X', projectionArgs=(), fileType='pdf')
               Draw the template uncertainty histograms created by MakeTemplateHistos(). More...
               
              def Nminus1 (self, node, cutgroup)
               Create an N-1 tree structure of nodes building off of node with the N cuts from cutgroup. More...
               
              def PrintNodeTree (self, outfilename, verbose=False)
               Print a PDF image of the node structure of the analysis. More...
               
              - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + +

              Public Attributes

               BaseNode
               Node. More...
               
               AllNodes
               {str:Node} More...
               
               Corrections
               dict More...
               
               isData
               bool More...
               
               preV6
               bool More...
               
               genEventCount
               int More...
               
               lhaid
               int More...
               
               ActiveNode
               Node. More...
               
               BaseNode
               Node. More...
               
               AllNodes
               {str:Node} More...
               
               Corrections
               dict More...
               
               isData
               bool More...
               
               preV6
               bool More...
               
               genEventCount
               int More...
               
               lhaid
               int More...
               
               ActiveNode
               Node. More...
               

              Detailed Description

              Main class for TIMBER.

              Implements an interface with ROOT's RDataFrame (RDF). The default values assume the data is in NanoAOD format. However, any TTree can be used. The class works on the basis of nodes and actions where nodes are an RDF instance and an action (or series of actions) can transform the RDF to create a new node(s).

              -

              When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new ActiveNode

              +

              When using class functions to perform actions, an active node will always be tracked so that the next action uses the active node and assigns the output node as the new ActiveNode

              Constructor & Destructor Documentation

              - -

              ◆ __init__()

              + +

              ◆ __init__()

              - + @@ -232,7 +232,7 @@

              Constructor.

              -

              Sets up the tracking of actions on an RDataFrame as nodes. Also looks up and stores common information in NanoAOD such as the number of generated events in a file (genEventCount), the LHA ID of the PDF set in the LHEPdfWeights branch (lhaid), if the file is data (isData), and if the file is before NanoAOD version 6 (preV6).

              +

              Sets up the tracking of actions on an RDataFrame as nodes. Also looks up and stores common information in NanoAOD such as the number of generated events in a file (genEventCount), the LHA ID of the PDF set in the LHEPdfWeights branch (lhaid), if the file is data (isData), and if the file is before NanoAOD version 6 (preV6).

              Parameters

              def TIMBER.Analyzer.analyzer.__init__ def __init__ (   self,
              @@ -245,14 +245,14 @@

              Member Function Documentation

              - -

              ◆ AddCorrection()

              + +

              ◆ AddCorrection()

              fileName(str): A ROOT file path or the path to a txt file which contains several ROOT file paths separated by new line characters.
              - + @@ -289,7 +289,7 @@

              - +
              def TIMBER.Analyzer.analyzer.AddCorrection def AddCorrection (   self,
              correction(Correction): Correction object to add.
              evalArgs([str], optional): List of arguments (NanoAOD branch names) to provide to per-event evaluation method. Default empty and clang will deduce if method definition argument names match columns in RDataFrame.
              node(Node, optional): Node to add correction on top of. Defaults to ActiveNode.
              node(Node, optional): Node to add correction on top of. Defaults to ActiveNode.
              @@ -302,18 +302,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode.

              - -

              ◆ AddCorrections()

              + +

              ◆ AddCorrections()

              - + @@ -339,7 +339,7 @@

              Add multiple Corrections to track.

              -

              Sets new ActiveNode with all correction variations calculated as new columns.

              +

              Sets new ActiveNode with all correction variations calculated as new columns.

              Parameters

              def TIMBER.Analyzer.analyzer.AddCorrections def AddCorrections (   self,
              @@ -349,18 +349,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode. - -

              ◆ Apply()

              + +

              ◆ Apply()

              correctionList([Correction]): List of Correction objects to add.
              - + @@ -391,11 +391,11 @@

              -

              Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default.

              +

              Applies a single CutGroup/VarGroup or an ordered list of Groups to the provided node or the ActiveNode by default.

              Parameters

              def TIMBER.Analyzer.analyzer.Apply def Apply (   self,
              - +
              actionGroupList(Group, list(Group)): The CutGroup or VarGroup to act on node or a list of CutGroups or VarGroups to act (in order) on node.
              node([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              node([type], optional): Node to create the new variable/column on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              trackEach(bool, optional): [description]. Defaults to True.
              @@ -408,18 +408,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode.

              - -

              ◆ Cut()

              + +

              ◆ Cut()

              - + @@ -450,13 +450,13 @@

              -

              Apply a cut/filter to a provided node or the ActiveNode by default.

              -

              Will add the resulting node to tracking and set it as the ActiveNode.

              +

              Apply a cut/filter to a provided node or the ActiveNode by default.

              +

              Will add the resulting node to tracking and set it as the ActiveNode.

              Parameters

              def TIMBER.Analyzer.analyzer.Cut def Cut (   self,
              - +
              name(str): Name for the cut for internal tracking and later reference.
              cuts(str, CutGroup): A one-line C++ string that evaluates as a boolean or a CutGroup object which contains multiple actions that evaluate as booleans.
              node(Node, optional): Node on which to apply the cut/filter. Defaults to ActiveNode.
              node(Node, optional): Node on which to apply the cut/filter. Defaults to ActiveNode.
              @@ -468,18 +468,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode.

              - -

              ◆ DataFrame()

              + +

              ◆ DataFrame()

              - + @@ -495,14 +495,14 @@

              -

              ◆ Define()

              + +

              ◆ Define()

              def TIMBER.Analyzer.analyzer.DataFrame def DataFrame (   self)
              - + @@ -533,13 +533,13 @@

              -

              Defines a variable/column on top of a provided node or the ActiveNode by default.

              -

              Will add the resulting node to tracking and set it as the ActiveNode.

              +

              Defines a variable/column on top of a provided node or the ActiveNode by default.

              +

              Will add the resulting node to tracking and set it as the ActiveNode.

              Parameters

              def TIMBER.Analyzer.analyzer.Define def Define (   self,
              - +
              name(str): Name for the column for internal tracking and later reference.
              variables(str, VarGroup): A one-line C++ string that evaluates to desired value to store or a VarGroup object which contains multiple actions that evaluate to the desired values.
              node(Node, optional): Node to create the new variable/column on top of. Defaults to ActiveNode.
              node(Node, optional): Node to create the new variable/column on top of. Defaults to ActiveNode.
              @@ -555,14 +555,14 @@

              -

              ◆ Discriminate()

              + +

              ◆ Discriminate()

              - + @@ -599,13 +599,13 @@

              -

              Forks a node based upon a discriminator being True or False (ActiveNode by default).

              +

              Forks a node based upon a discriminator being True or False (ActiveNode by default).

              Parameters

              def TIMBER.Analyzer.analyzer.Discriminate def Discriminate (   self,
              - - + +
              name(str): Name for the discrimination for internal tracking and later reference.
              discriminator(str): A one-line C++ string that evaluates as a boolean to discriminate for the forking of the node.
              node(Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              passAsActiveNode(bool, optional): True if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
              node(Node, optional): Node to discriminate. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              passAsActiveNode(bool, optional): True if the ActiveNode should be set to the node that passes the discriminator. False if the ActiveNode should be set to the node that fails the discriminator. Defaults to None in which case the ActiveNode does not change.
              @@ -615,14 +615,14 @@

              -

              ◆ DrawTemplates()

              + +

              ◆ DrawTemplates()

              - + @@ -665,7 +665,7 @@

              -

              Draw the template uncertainty histograms created by MakeTemplateHistos().

              +

              Draw the template uncertainty histograms created by MakeTemplateHistos().

              Parameters

              def TIMBER.Analyzer.analyzer.DrawTemplates def DrawTemplates (   self,
              @@ -682,14 +682,14 @@

              -

              ◆ FilterColumnNames()

              + +

              ◆ FilterColumnNames()

              hGroup(HistGroup): Uncertainty template histograms.
              - + @@ -718,7 +718,7 @@

              Parameters

              def TIMBER.Analyzer.analyzer.FilterColumnNames def FilterColumnNames (   self,
              - +
              columns([str]): List of column names (str)
              node(Node, optional): Node to compare against. Defaults to BaseNode.
              node(Node, optional): Node to compare against. Defaults to BaseNode.
              @@ -726,14 +726,14 @@

              -

              ◆ GetActiveNode()

              + +

              ◆ GetActiveNode()

              - + @@ -745,18 +745,18 @@

              Returns
              -Node Value of ActiveNode.
              +Node Value of ActiveNode. - -

              ◆ GetBaseNode()

              + +

              ◆ GetBaseNode()

              def TIMBER.Analyzer.analyzer.GetActiveNode def GetActiveNode (   self)
              - + @@ -768,18 +768,18 @@

              Returns
              -Node Value of BaseNode.
              +Node Value of BaseNode. - -

              ◆ GetCorrectionNames()

              + +

              ◆ GetCorrectionNames()

              def TIMBER.Analyzer.analyzer.GetBaseNode def GetBaseNode (   self)
              - + @@ -793,14 +793,14 @@

              -

              ◆ GetFileName()

              + +

              ◆ GetFileName()

              def TIMBER.Analyzer.analyzer.GetCorrectionNames def GetCorrectionNames (   self)
              - + @@ -816,14 +816,14 @@

              -

              ◆ GetFlagString()

              + +

              ◆ GetFlagString()

              def TIMBER.Analyzer.analyzer.GetFileName def GetFileName (   self)
              - + @@ -842,7 +842,7 @@

              -

              Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string.

              +

              Checks input list for missing flags and drops those missing (FilterColumnNames) and then concatenates those remaining into an AND string.

              Parameters

              def TIMBER.Analyzer.analyzer.GetFlagString def GetFlagString (   self,
              @@ -855,14 +855,14 @@

              -

              ◆ GetTrackedNodeNames()

              + +

              ◆ GetTrackedNodeNames()

              flagList[str]: List of flag names
              - + @@ -876,14 +876,14 @@

              -

              ◆ GetTriggerString()

              + +

              ◆ GetTriggerString()

              def TIMBER.Analyzer.analyzer.GetTrackedNodeNames def GetTrackedNodeNames (   self)
              - + @@ -902,7 +902,7 @@

              -

              Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string.

              +

              Checks input list for missing triggers and drops those missing (FilterColumnNames) and then concatenates those remaining into an OR (||) string.

              Parameters

              def TIMBER.Analyzer.analyzer.GetTriggerString def GetTriggerString (   self,
              @@ -915,14 +915,14 @@

              -

              ◆ MakeTemplateHistos()

              + +

              ◆ MakeTemplateHistos()

              trigList[str]: List of trigger names
              - + @@ -953,12 +953,12 @@

              -

              Generates the uncertainty template histograms based on the weights created by MakeWeightCols().

              +

              Generates the uncertainty template histograms based on the weights created by MakeWeightCols().

              Parameters

              def TIMBER.Analyzer.analyzer.MakeTemplateHistos def MakeTemplateHistos (   self,
              - +
              templateHist(TH1,TH2,TH3): A TH1, TH2, or TH3 used as a template to create the histograms.
              variables([str]): A list of the columns/variables to plot (ex. ["x","y","z"]).
              node(Node): Node to plot histograms from. Defaults to ActiveNode.
              node(Node): Node to plot histograms from. Defaults to ActiveNode.
              @@ -968,14 +968,14 @@

              -

              ◆ MakeWeightCols()

              + +

              ◆ MakeWeightCols()

              - + @@ -1012,7 +1012,7 @@

              Parameters

              def TIMBER.Analyzer.analyzer.MakeWeightCols def MakeWeightCols (   self,
              - +
              node(Node): Node to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              node(Node): Node to calculate weights on top of. Must be of type Node (not RDataFrame). Defaults to ActiveNode.
              correctionNameslist(str): List of correction names (strings) to consider. Default is None in which case all corrections being tracked are considered.
              dropListlist(str): List of correction names (strings) to not consider. Default is empty lists in which case no corrections are dropped from consideration.
              @@ -1020,18 +1020,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode.

              - -

              ◆ Nminus1()

              + +

              ◆ Nminus1()

              - + @@ -1057,7 +1057,7 @@

              Create an N-1 tree structure of nodes building off of node with the N cuts from cutgroup.

              -

              The structure is optimized so that as many actions are shared as possible so that the N different nodes can be made. Use PrintNodeTree() to visualize.

              +

              The structure is optimized so that as many actions are shared as possible so that the N different nodes can be made. Use PrintNodeTree() to visualize.

              Parameters

              def TIMBER.Analyzer.analyzer.Nminus1 def Nminus1 (   self,
              @@ -1071,14 +1071,14 @@

              -

              ◆ PrintNodeTree()

              + +

              ◆ PrintNodeTree()

              node(Node): Node to build on.
              - + @@ -1118,14 +1118,14 @@

              -

              ◆ SetActiveNode()

              + +

              ◆ SetActiveNode()

              def TIMBER.Analyzer.analyzer.PrintNodeTree def PrintNodeTree (   self,
              - + @@ -1147,7 +1147,7 @@

              Parameters

              def TIMBER.Analyzer.analyzer.SetActiveNode def SetActiveNode (   self,
              - +
              node(Node): Node to set as ActiveNode.
              node(Node): Node to set as ActiveNode.
              @@ -1159,18 +1159,18 @@

              Returns
              -Node New ActiveNode.
              +Node New ActiveNode.

              - -

              ◆ Snapshot()

              + +

              ◆ Snapshot()

              - + @@ -1212,18 +1212,18 @@

              -
              See also
              Node::Snapshot
              +
              See also
              Node::Snapshot
              - -

              ◆ TrackNode()

              + +

              ◆ TrackNode()

              def TIMBER.Analyzer.analyzer.Snapshot def Snapshot (   self,
              - + @@ -1243,7 +1243,7 @@

              Add a node to track.

              -

              Will add the node to AllNodes dictionary with key node.name.

              +

              Will add the node to AllNodes dictionary with key node.name.

              Parameters

              def TIMBER.Analyzer.analyzer.TrackNode def TrackNode (   self,
              @@ -1264,31 +1264,31 @@

              Member Data Documentation

              - -

              ◆ ActiveNode

              + +

              ◆ ActiveNode

              node(Node): Node to start tracking.
              - +
              TIMBER.Analyzer.analyzer.ActiveNodeActiveNode

              Node.

              -

              Active node. Access via GetActiveNode(). Set via SetActiveNode().

              +

              Active node. Access via GetActiveNode(). Set via SetActiveNode().

              - -

              ◆ AllNodes

              + +

              ◆ AllNodes

              - +
              TIMBER.Analyzer.analyzer.AllNodesAllNodes
              @@ -1298,14 +1298,14 @@

              -

              ◆ BaseNode

              + +

              ◆ BaseNode

              - +
              TIMBER.Analyzer.analyzer.BaseNodeBaseNode
              @@ -1315,14 +1315,14 @@

              -

              ◆ Corrections

              + +

              ◆ Corrections

              - +
              TIMBER.Analyzer.analyzer.CorrectionsCorrections
              @@ -1332,14 +1332,14 @@

              -

              ◆ genEventCount

              + +

              ◆ genEventCount

              - +
              TIMBER.Analyzer.analyzer.genEventCountgenEventCount
              @@ -1349,14 +1349,14 @@

              -

              ◆ isData

              + +

              ◆ isData

              - +
              TIMBER.Analyzer.analyzer.isDataisData
              @@ -1366,14 +1366,14 @@

              -

              ◆ lhaid

              + +

              ◆ lhaid

              - +
              TIMBER.Analyzer.analyzer.lhaidlhaid
              @@ -1383,14 +1383,14 @@

              -

              ◆ preV6

              + +

              ◆ preV6

              - +
              TIMBER.Analyzer.analyzer.preV6preV6
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zhsnsu0C9?wVxe*lx6}#yJ1_hd!d=;Kph=~8n6&*JHot<8 diff --git a/docs/files.html b/docs/files.html index 9ad3aa4..5d0dac5 100644 --- a/docs/files.html +++ b/docs/files.html @@ -13,6 +13,7 @@ +
              @@ -68,11 +69,11 @@
              [detail level 1234]
              - - - - - + + + + +
               ▼ TIMBER
               ▼ Framework
               ▼ ExternalTools
               BTagCalibrationStandalone.h
               ▼ include
               common.h
               Pythonic.h
               ▼ include
               common.h
               Pythonic.h
               ▼ Tools
               Plot.pyFunctions to easily plot histograms together in various configurations
              diff --git a/docs/group___common.html b/docs/group___common.html new file mode 100644 index 0000000..6bda633 --- /dev/null +++ b/docs/group___common.html @@ -0,0 +1,695 @@ + + + + + + + +TIMBER: Common Tools + + + + + + + + + + +
              +
              + + + + + + +
              +
              TIMBER +  beta +
              +
              Tree Interface for Making Binned Events with RDataFrame
              +
              +
              + + + + + + + +
              + +
              +
              + + +
              + +
              + +
              +
              +Functions
              +
              +
              Common Tools
              +
              +
              + +

              Commonly used functions available for use that can be generic or TIMBER specific. +More...

              + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

              +Functions

              def CutflowHist (name, node, efficiency=False)
               Draws a cutflow histogram using the report feature of RDF. More...
               
              def CutflowTxt (name, node, efficiency=False)
               Writes out the cutflow as a text file using the report feature of RDF. More...
               
              def StitchQCD (QCDdict, normDict=None)
               Stitches together histograms in QCD hist groups. More...
               
              def CompileCpp (blockcode, library=False)
               Compiles C++ code via the gInterpreter. More...
               
              def OpenJSON (filename)
               Opens JSON file as a dictionary (accounting for unicode encoding) More...
               
              def AsciiEncodeDict (data)
               Encodes dict to ascii from unicode. More...
               
              def ConcatCols (self, colnames, val='1', connector='&&')
               Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator). More...
               
              def GetHistBinningTuple (h)
               Gets the binning information for a histogram and returns it as a tuple ordered like the arguements to construct a new histogram. More...
               
              def ColliMate (myString, width=18)
               Collimates strings to have consistent spacing between first character of word i with the first character of word i+1 and i-1. More...
               
              def DictStructureCopy (inDict)
               Recursively copies the structure of a dictionary with non-dict items replaced with 0. More...
               
              def DictCopy (inDict)
               Recursively copy dictionary structure and values. More...
               
              def ExecuteCmd (cmd, dryrun=False)
               Executes shell command via subprocess.call() and prints the command for posterity. More...
               
              def DictToLatexTable (dict2convert, outfilename, roworder=[], columnorder=[])
               Converts a dictionary with two layers (ie. More...
               
              def FindCommonString (string_list)
               Finds a common string between a list of strings. More...
               
              def cd (newdir)
               Context manager to cd to another folder in the middle of a python script. More...
               
              +

              Detailed Description

              +

              Commonly used functions available for use that can be generic or TIMBER specific.

              +

              Function Documentation

              + +

              ◆ AsciiEncodeDict()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.AsciiEncodeDict ( data)
              +
              + +

              Encodes dict to ascii from unicode.

              +

              Credit Andrew Clark on StackOverflow.

              +
              Parameters
              + + +
              data(dict): Input dictionary.
              +
              +
              +
              Returns
              +
              +dict New dictionary with unicode converted to ascii.
              + +
              +
              + +

              ◆ cd()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.cd ( newdir)
              +
              + +

              Context manager to cd to another folder in the middle of a python script.

              +

              Useful to use if you're producing a lot of files in a dedicated folder. Change into the folder and then produce the files.

              +
              Parameters
              + + +
              newdir(str): Directory to cd into.
              +
              +
              + +
              +
              + +

              ◆ ColliMate()

              + +
              +
              + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.ColliMate ( myString,
               width = 18 
              )
              +
              + +

              Collimates strings to have consistent spacing between first character of word i with the first character of word i+1 and i-1.

              +

              Recommended instead to use format() method of python strings as described here.

              +
              Parameters
              + + + +
              myString(str): String to space (words only separated by single space).
              width(int, optional): Column widths. Defaults to 18.
              +
              +
              +
              Returns
              +
              +str String with new spacing between words.
              + +
              +
              + +

              ◆ CompileCpp()

              + +
              +
              + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.CompileCpp ( blockcode,
               library = False 
              )
              +
              + +

              Compiles C++ code via the gInterpreter.

              +

              A python string (the actual code) can be passed or a file name (the file will be opened and read). If a file is passed, the C++ code can be compiled as a library and if in the future the C++ script is older than the library, then the library will be loaded instead.

              +
              Parameters
              + + + +
              blockcode(str): Either a block of C++ code or a file name to open.
              library(bool, optional): Compiles a library which can be later loaded to avoid compilation time. Defaults to False.
              +
              +
              + +
              +
              + +

              ◆ ConcatCols()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.ConcatCols ( self,
               colnames,
               val = '1',
               connector = '&&' 
              )
              +
              + +

              Concatenates a list of column names evaluating to a common val (usually 1 or 0) with some connector (boolean logic operator).

              +
              Parameters
              + + + + +
              colnames([str]): List of column names.
              val(str): Value to test equality of all columns. Defaults to '1'.
              connector(str): C++ boolean logic operator between column equality checks. Defaults to '&&'.
              +
              +
              +
              Returns
              +
              +str Concatenated string of the entire evaluation that in C++ will return a bool.
              + +
              +
              + +

              ◆ CutflowHist()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.CutflowHist ( name,
               node,
               efficiency = False 
              )
              +
              + +

              Draws a cutflow histogram using the report feature of RDF.

              +
              Parameters
              + + + + +
              name(str): Name of output histogram
              node(Node): Input Node from which to get the cutflow.
              efficiency(bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node).
              +
              +
              +
              Returns
              +
              +TH1 Histogram with each bin showing yield (or efficiency) for progressive cuts.
              + +
              +
              + +

              ◆ CutflowTxt()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.CutflowTxt ( name,
               node,
               efficiency = False 
              )
              +
              + +

              Writes out the cutflow as a text file using the report feature of RDF.

              +
              Parameters
              + + + + +
              name(str): Name of output text file.
              node(Node): Input Node from which to get the cutflow.
              efficiency(bool, optional): Reports an efficiency instead of yields (relative to number of events before any cuts on Node).
              +
              +
              +
              Returns
              +
              +None
              + +
              +
              + +

              ◆ DictCopy()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.DictCopy ( inDict)
              +
              + +

              Recursively copy dictionary structure and values.

              +
              Parameters
              + + +
              inDict(dict): Dictionary to copy.
              +
              +
              +
              Returns
              +
              +dict Output copy.
              + +
              +
              + +

              ◆ DictStructureCopy()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.DictStructureCopy ( inDict)
              +
              + +

              Recursively copies the structure of a dictionary with non-dict items replaced with 0.

              +
              Parameters
              + + +
              inDict(dict): Dictionary with structure to copy.
              +
              +
              +
              Returns
              +
              +dict Output dict.
              + +
              +
              + +

              ◆ DictToLatexTable()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.DictToLatexTable ( dict2convert,
               outfilename,
               roworder = [],
               columnorder = [] 
              )
              +
              + +

              Converts a dictionary with two layers (ie.

              +

              only one set of sub-keys) to a LaTeX table. First set of keys (ie. external) are rows, second (ie. internal) are columns. If the column entry for a given row is not provided (ie. missing key), then '-' is substituted.

              +
              Parameters
              + + + + + +
              dict2convert(dict): Input dictionary.
              outfilename(str): Output .tex file name.
              roworder(list, optional): Custom ordering of rows. Defaults to [] in which case the sorted keys are used.
              columnorder(list, optional): Custom ordering of columns. Defaults to [] in which case the sorted keys are used.
              +
              +
              + +
              +
              + +

              ◆ ExecuteCmd()

              + +
              +
              + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.ExecuteCmd ( cmd,
               dryrun = False 
              )
              +
              + +

              Executes shell command via subprocess.call() and prints the command for posterity.

              +
              Parameters
              + + + +
              cmd(str): Shell command to run.
              dryrun(bool, optional): Prints command but doesn't execute it. Defaults to False.
              +
              +
              + +
              +
              + +

              ◆ FindCommonString()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.FindCommonString ( string_list)
              +
              + +

              Finds a common string between a list of strings.

              +
              Parameters
              + + +
              string_list([str]): List of strings to compare.
              +
              +
              +
              Returns
              +
              +str Matched sub-string.
              + +
              +
              + +

              ◆ GetHistBinningTuple()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.GetHistBinningTuple ( h)
              +
              + +

              Gets the binning information for a histogram and returns it as a tuple ordered like the arguements to construct a new histogram.

              +

              Supports TH1, TH2, and TH3.

              +
              Parameters
              + + +
              h(TH1): Input histogram from which to get the binning information.
              +
              +
              +
              Exceptions
              + + +
              TypeErrorIf histogram does not derive from TH1.
              +
              +
              +
              Returns
              tuple(tuple, int): First element of return is the binning and the second element is the dimensionality.
              + +
              +
              + +

              ◆ OpenJSON()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Common.OpenJSON ( filename)
              +
              + +

              Opens JSON file as a dictionary (accounting for unicode encoding)

              +
              Parameters
              + + +
              filename(str): JSON file name to open.
              +
              +
              +
              Returns
              +
              +dict Python dictionary with JSON content.
              + +
              +
              + +

              ◆ StitchQCD()

              + +
              +
              + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Common.StitchQCD ( QCDdict,
               normDict = None 
              )
              +
              + +

              Stitches together histograms in QCD hist groups.

              +
              Parameters
              + + + +
              QCDdict({string:HistGroup}): Dictionary of HistGroup objects
              normDict({string:float}): Factors to normalize each sample to where keys must match QCDdict keys. Default to None and assume normalization has already been done.
              +
              +
              +
              Returns
              +
              +HistGroup New HistGroup with histograms in group being the final stitched versions
              + +
              +
              +
              + +
              +Generated by   +doxygen + 1.8.13 +
              + + diff --git a/docs/group___plot.html b/docs/group___plot.html new file mode 100644 index 0000000..5610ee2 --- /dev/null +++ b/docs/group___plot.html @@ -0,0 +1,359 @@ + + + + + + + +TIMBER: Plotting Tools + + + + + + + + + + +
              +
              + + + + + + +
              +
              TIMBER +  beta +
              +
              Tree Interface for Making Binned Events with RDataFrame
              +
              +
              + + + + + + + +
              + +
              +
              + + +
              + +
              + +
              +
              +Functions
              +
              +
              Plotting Tools
              +
              +
              + +

              Functions to easily plot histograms together in various configurations. +More...

              + + + + + + + + + + + + + + +

              +Functions

              def CompareShapes (outfilename, year, prettyvarname, bkgs={}, signals={}, names={}, colors={}, scale=True, stackBkg=False)
               Create a plot that compares the shapes of backgrounds versus signal. More...
               
              def MoneyPlots (name, histlist, bkglist=[], signals=[], colors=[], titles=[], logy=False, xtitle='', ytitle='', dataOff=False, datastyle='pe')
               Tool to produce plots quickly as .root, .pdf, .png, etc. More...
               
              def MakePullPlot (data, bkg)
               Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature. More...
               
              def MakeUpDown (hist)
               Creates up and down variations of a histogram based on its per-bin errors. More...
               
              +

              Detailed Description

              +

              Functions to easily plot histograms together in various configurations.

              +

              Function Documentation

              + +

              ◆ CompareShapes()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Plot.CompareShapes ( outfilename,
               year,
               prettyvarname,
               bkgs = {},
               signals = {},
               names = {},
               colors = {},
               scale = True,
               stackBkg = False 
              )
              +
              + +

              Create a plot that compares the shapes of backgrounds versus signal.

              +

              Backgrounds will be stacked together and signals will be plot separately. Total background and signals are scaled to 1 if scale == True. Inputs organized as dicts so that keys can match across dicts (ex. bkgs and bkgNames).

              +
              Parameters
              + + + + + + + + +
              outfilename(string): Path where plot will be saved.
              prettyvarname(string): What will be assigned to as the axis title.
              bkgs({string:TH1}, optional): Dictionary of backgrounds to plot. Defaults to {}.
              signals({string:TH1}, optional): Dictionary of signals to plot. Defaults to {}.
              names({string:string}, optional): Formatted version of names for backgrounds and signals to appear in legend. Keys must match those in bkgs and signal. Defaults to {}.
              colors({string:int}, optional): TColor code for backgrounds and signals to appear in plot. Keys must match those in bkgs and signal. Defaults to {}.
              scale(bool, optional): If True, scales total background to unity and signals (separately) to unity. Defaults to True.
              +
              +
              + +
              +
              + +

              ◆ MakePullPlot()

              + +
              +
              + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Plot.MakePullPlot ( data,
               bkg 
              )
              +
              + +

              Generates a pull plot defined as (data-bkg)/sigma where sigma is the error of data and bkg added in quadrature.

              +
              Parameters
              + + + +
              data(TH1): Histogram of data.
              bkg(TH1): Histogram of total background.
              +
              +
              +
              Returns
              +
              +TH1 Histogram of the pull.
              + +
              +
              + +

              ◆ MakeUpDown()

              + +
              +
              + + + + + + + + +
              def TIMBER.Tools.Plot.MakeUpDown ( hist)
              +
              + +

              Creates up and down variations of a histogram based on its per-bin errors.

              +
              Parameters
              + + +
              hist(TH1): Histogram from which to create up/down distributions.
              +
              +
              +
              Returns
              (TH1, TH1): Tuple of (up, down) histograms.
              + +
              +
              + +

              ◆ MoneyPlots()

              + +
              +
              + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
              def TIMBER.Tools.Plot.MoneyPlots ( name,
               histlist,
               bkglist = [],
               signals = [],
               colors = [],
               titles = [],
               logy = False,
               xtitle = '',
               ytitle = '',
               dataOff = False,
               datastyle = 'pe' 
              )
              +
              + +

              Tool to produce plots quickly as .root, .pdf, .png, etc.

              +

              If providing TH2s, only plots the data (histlist) with no comparisons. If providing TH1s, plots together the data (histlist), total background (individual components as a stack), and signals with pulls in a lower pane. Providing multiple data histograms will plot the separate pads on a single canvas. Up to 6 pads are supported. See argument descriptions for plotting options.

              +
              Parameters
              + + + + + + + + + + + + +
              name(str): Name of output file with extension (file type must be supported by TCanvas.Print()).
              histlist([TH1 or TH2]): List of data histograms.
              bkglist([[TH1]], optional): List of list of background histograms. Index of first list level matches against index of histlist. Internal list is the group of backgrounds that will be stacked together to create the total background estimate. For example you could have: histlist = [data1, data2] and bkglist = [[bkg1_1,bkg2_1],[bkg1_2,bkg2_2]]. Defaults to [].
              signals([TH1], optional): List of signal histograms where index corresponds to the index of histlist. Defaults to [].
              colors([int], optional): List of integers corresponding to TColor codes where the index corresponds to the index of histlist. Defaults to [].
              titles([str], optional): List of titles for each histogram where the index corresponds to the index of histlist. Defaults to [] which means the input titles of histlist will be used.
              logy(bool, optional): Option to plot log y-axis. Defaults to False.
              xtitle(str, optional): X-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used.
              ytitle(str, optional): Y-axis title for all histograms on the canvas. Defaults to '' which means the input titles of histlist will be used.
              dataOff(bool, optional): If True, turns off data from being drawn in all pads. Defaults to False.
              datastyle(str, optional): Style in which to draw data. Defaults to 'pe'.
              +
              +
              +
              Exceptions
              + + +
              ValueErrorIf number of requested pads is greater than 6.
              +
              +
              + +
              +
              +
              + +
              +Generated by   +doxygen + 1.8.13 +
              + + diff --git a/docs/hierarchy.html b/docs/hierarchy.html index c2e4060..07c24db 100644 --- a/docs/hierarchy.html +++ b/docs/hierarchy.html @@ -72,13 +72,13 @@  CCollection  CJetRecalibrator  ▼Cobject - CTIMBER.Analyzer.analyzerMain class for TIMBER - CTIMBER.Analyzer.CorrectionCorrection class to handle corrections produced by C++ modules - ▼CTIMBER.Analyzer.GroupOrganizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items - CTIMBER.Analyzer.CutGroupStores Cut actions - CTIMBER.Analyzer.HistGroupStores histograms with dedicated function to use TH1/2/3 methods in a batch - CTIMBER.Analyzer.VarGroupStores Define actions - CTIMBER.Analyzer.NodeClass to represent nodes in the DataFrame processing graph + CanalyzerMain class for TIMBER + CCorrectionCorrection class to handle corrections produced by C++ modules + ▼CGroupOrganizes objects in OrderedDict with basic functionality to add and drop items, add Groups together, get keys, and access items + CCutGroupStores Cut actions + CHistGroupStores histograms with dedicated function to use TH1/2/3 methods in a batch + CVarGroupStores Define actions + CNodeClass to represent nodes in the DataFrame processing graph  CPDFweight_uncert  CSJBtag_SF diff --git a/docs/inherit_graph_0.map b/docs/inherit_graph_0.map index cec5508..44ac37d 100644 --- a/docs/inherit_graph_0.map +++ b/docs/inherit_graph_0.map @@ -1,3 +1,9 @@ - + + + + + + + diff --git a/docs/inherit_graph_0.md5 b/docs/inherit_graph_0.md5 index 4de1ebd..73b9f20 100644 --- a/docs/inherit_graph_0.md5 +++ b/docs/inherit_graph_0.md5 @@ -1 +1 @@ -a8ef2059bd8288b340c88f02429fc830 \ No newline at end of file +8c354cccc0a11303f463fe6f6ab1ea00 \ No newline at end of file diff --git a/docs/inherit_graph_0.png b/docs/inherit_graph_0.png index f7ffc92368b06ac4ef358686d2f95bde15ae57f3..86c40f6672dfa4d7c0fce8e8702731186beec4e5 100644 GIT binary patch literal 11659 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              + + + + + + + + +
              +
              + + +
              + +
              + + +
              +
              +
              +
              Plot.py Namespace Reference
              +
              +
              + +

              Functions to easily plot histograms together in various configurations. +More...

              +

              Detailed Description

              +

              Functions to easily plot histograms together in various configurations.

              +
              + +
              +Generated by   +doxygen + 1.8.13 +
              + + diff --git a/docs/namespaces.html b/docs/namespaces.html new file mode 100644 index 0000000..f32c532 --- /dev/null +++ b/docs/namespaces.html @@ -0,0 +1,81 @@ + + + + + + + +TIMBER: Packages + + + + + + + + + + +
              +
              + + + + + + +
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              TIMBER +  beta +
              +
              Tree Interface for Making Binned Events with RDataFrame
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              +
              + + + + + + + +
              + +
              +
              + + +
              + +
              + +
              +
              +
              Packages
              +
              +
              +
              Here are the packages with brief descriptions (if available):
              + + +
               NCommonHome to commonly used tools available for use that can be generic or TIMBER specific
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              +
              + +
              +Generated by   +doxygen + 1.8.13 +
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diff --git a/docs/search/variables_1.js b/docs/search/variables_1.js index 0f34dc1..dcbe6b6 100644 --- a/docs/search/variables_1.js +++ b/docs/search/variables_1.js @@ -1,4 +1,4 @@ var searchData= [ - ['basenode',['BaseNode',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a51e1b1a7395dd3547e3cf51491b3b516',1,'TIMBER::Analyzer::analyzer']]] + ['basenode',['BaseNode',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a603186b869e7eea51eb986459dcec405',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_2.js b/docs/search/variables_2.js index 6961527..a527599 100644 --- a/docs/search/variables_2.js +++ b/docs/search/variables_2.js @@ -1,5 +1,5 @@ var searchData= [ - ['children',['children',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a384a4bd7b703ac74f58158318620d9ff',1,'TIMBER::Analyzer::Node']]], - ['corrections',['Corrections',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a3cd671597a82123eb3d523a56c4a6a9d',1,'TIMBER::Analyzer::analyzer']]] + ['children',['children',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#a0ad3c9f0298ae46424fb2461b3e2d506',1,'TIMBER::Analyzer::Node']]], + ['corrections',['Corrections',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a46c1a564f4ceb0cf70b26f3f74ccfe33',1,'TIMBER::Analyzer::analyzer']]] ]; diff --git a/docs/search/variables_3.js b/docs/search/variables_3.js index 63247d4..c2499f1 100644 --- a/docs/search/variables_3.js +++ b/docs/search/variables_3.js @@ -1,4 +1,4 @@ var searchData= [ - ['dataframe',['DataFrame',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#abb2bd4f43dccbc1f74ba11306485e5ca',1,'TIMBER::Analyzer::Node']]] + ['dataframe',['DataFrame',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_node.html#ae8dafbef0bedc58da1657f86a31508e6',1,'TIMBER::Analyzer::Node']]] ]; diff --git a/docs/search/variables_4.js b/docs/search/variables_4.js index 61d55d7..4a4b047 100644 --- a/docs/search/variables_4.js +++ b/docs/search/variables_4.js @@ -1,4 +1,4 @@ var searchData= [ - ['geneventcount',['genEventCount',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#ad1d9977e8acbb8938859b17f2e8d9699',1,'TIMBER::Analyzer::analyzer']]] + ['geneventcount',['genEventCount',['../class_t_i_m_b_e_r_1_1_analyzer_1_1analyzer.html#a19e1d2137e2e3d5d8c38c35de1b66b0d',1,'TIMBER::Analyzer::analyzer']]] ]; 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diff --git a/docs/search/variables_9.js b/docs/search/variables_9.js index fd1e3e6..9a006ef 100644 --- a/docs/search/variables_9.js +++ b/docs/search/variables_9.js @@ -1,4 +1,4 @@ var searchData= [ - ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a337e60e0d4812bacd014e8a58b1041d0',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#aaae6f58bdd86340ac3111e7500ce808e',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#af801e90989189af7b00841852cbede95',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#aa1ce98d4d80af07f36a322aa2eb280f9',1,'TIMBER.Analyzer.HistGroup.type()']]] + ['type',['type',['../class_t_i_m_b_e_r_1_1_analyzer_1_1_group.html#a7aead736a07eaf25623ad7bfa1f0ee2d',1,'TIMBER.Analyzer.Group.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_cut_group.html#a7aead736a07eaf25623ad7bfa1f0ee2d',1,'TIMBER.Analyzer.CutGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_var_group.html#a7aead736a07eaf25623ad7bfa1f0ee2d',1,'TIMBER.Analyzer.VarGroup.type()'],['../class_t_i_m_b_e_r_1_1_analyzer_1_1_hist_group.html#a7aead736a07eaf25623ad7bfa1f0ee2d',1,'TIMBER.Analyzer.HistGroup.type()']]] ]; diff --git a/docs/struct_collection.html b/docs/struct_collection.html index fcefedc..39c13c9 100644 --- a/docs/struct_collection.html +++ b/docs/struct_collection.html @@ -71,18 +71,18 @@ - - - + - - + - - + - +

              Public Attributes

              +
              map< string, int * > Int
               
              +
               
              map< string, bool * > Bool
               
              +
               
              map< string, RVec< float > * > RVecFloat
               
              +
               
              map< string, RVec< int > * > RVecInt
               
               

              Detailed Description

              Structure to store maps of the various types of objects in a collection. UChar not considered. Use by building each map as <branchName, branchValue> and then assigning to the correct struct member.

              diff --git a/doxysetup/Doxyfile b/doxysetup/Doxyfile index 245552c..d40e267 100644 --- a/doxysetup/Doxyfile +++ b/doxysetup/Doxyfile @@ -531,7 +531,7 @@ CASE_SENSE_NAMES = NO # scope will be hidden. # The default value is: NO. -HIDE_SCOPE_NAMES = NO +HIDE_SCOPE_NAMES = YES # If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will # append additional text to a page's title, such as Class Reference. If set to diff --git a/doxysetup/DoxygenLayout.xml b/doxysetup/DoxygenLayout.xml index 7590542..4712971 100644 --- a/doxysetup/DoxygenLayout.xml +++ b/doxysetup/DoxygenLayout.xml @@ -4,17 +4,17 @@ - + - - + + - + - +