diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 4638d452..2f8a201a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -24,7 +24,7 @@ repos:
               docs/notes/
           )
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.7
+    rev: v0.5.5
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --unsafe-fixes]
diff --git a/lnschema_core/ids.py b/lnschema_core/ids.py
index 4016993e..87f85d88 100644
--- a/lnschema_core/ids.py
+++ b/lnschema_core/ids.py
@@ -36,6 +36,7 @@
 ======= ===========
 
 """
+
 import secrets
 import string
 
diff --git a/lnschema_core/models.py b/lnschema_core/models.py
index 3c81c05c..9938784d 100644
--- a/lnschema_core/models.py
+++ b/lnschema_core/models.py
@@ -81,15 +81,13 @@ class Meta:
     """
 
     @overload
-    def __init__(self):
-        ...
+    def __init__(self): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -164,15 +162,13 @@ class Meta:
     """Last run that created or updated the record."""
 
     @overload
-    def __init__(self):
-        ...
+    def __init__(self): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -196,15 +192,13 @@ class Meta:
     """Sequence of runs that created or updated the record."""
 
     @overload
-    def __init__(self):
-        ...
+    def __init__(self): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1090,15 +1084,13 @@ def __init__(
         handle: str,
         email: str,
         name: str | None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1180,15 +1172,13 @@ def __init__(
         root: str,
         type: str,
         region: str | None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1340,15 +1330,13 @@ def __init__(
         version: str | None = None,
         type: TransformType | None = None,
         is_new_version_of: Transform | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1483,15 +1471,13 @@ def __init__(
         transform: Transform,
         reference: str | None = None,
         reference_type: str | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1598,15 +1584,13 @@ def __init__(
         description: str | None = None,
         reference: str | None = None,
         reference_type: str | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1717,15 +1701,13 @@ def __init__(
         unit: str | None,
         description: str | None,
         synonyms: str | None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -1867,15 +1849,13 @@ def __init__(
         features: Iterable[Record],
         dtype: str | None = None,
         name: str | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -2154,15 +2134,13 @@ def __init__(
         description: str | None = None,
         is_new_version_of: Artifact | None = None,
         run: Run | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,
@@ -2611,15 +2589,13 @@ def __init__(
         reference_type: str | None = None,
         run: Run | None = None,
         is_new_version_of: Collection | None = None,
-    ):
-        ...
+    ): ...
 
     @overload
     def __init__(
         self,
         *db_args,
-    ):
-        ...
+    ): ...
 
     def __init__(
         self,