Release 0.69.0

What's Changed

• ✨ Add latest_version filter for QuerySet by @falexwolf in #1489
• ⬆️ Make get_stat_dir_s3 compatible with canonical storage policy (s3:ListBucket conditional on prefix/) by @bpenteado in #1490
• ✨ Integrate lamindb with git by @falexwolf in #1493
• ✨ Allow including simple related fields in .df() by @falexwolf in #1495
• 🩹 Handle OSError during delete by @sunnyosun in #1492
• ⬆️ Update bionty by @sunnyosun in #1496
• 🚸 Sync default git repo from hub by @falexwolf in #1497
• 🚚 Move transform settings into settings by @falexwolf in #1498
• 🚸 Upload script source code and environment during ln.track() by @falexwolf in #1499
• 🚚 Add transform.description, rename transform.short_name to transform.key by @falexwolf in #1500
• ✨ Return storage_idx in MappedCollection by @Koncopd in #1504
• ✨ Introduce ln.finish(), track run finish times, sync notebooks from within API by @falexwolf in #1501
• ♻️ Add a json field to Run by @falexwolf in #1505

Full Changelog: 0.68.2...0.69.0

Release 0.68.2

What's Changed

• Fix old style URLs by @Zethson in #1485
• 🚚 Rename lnschema_lamin1 to wetlab by @falexwolf in #1487
• 🚸 More sensible transform types by @falexwolf in #1486
• 🚚 Move transform & run artifacts into cache before uploading by @falexwolf in #1488

Full Changelog: 0.68.1...0.68.2

Release 0.68.1

What's Changed

• ♻️ Refactor transform update dialogue, more tests by @falexwolf in #1471
• 🩹 Pin s3fs by @Koncopd in #1472
• 📝 Improve docs and make some methods private for MappedCollection by @Koncopd in #1473
• ♻️ Type UPathStr & move .dev to .core in lamindb-setup by @falexwolf in #1475
• ♻️ Refactor tests by @sunnyosun in #1477
• ♻️ Move generic hashing and storage utilities into lamindb-setup by @bpenteado in #1476
• 🚚 Replace instance.identifier with instance.slug by @falexwolf in #1478
• 🚸 Soft-deprecate lamin load in favor of lamin connect, require ln.connect() unless auto_connect is enabled by @falexwolf in #1480
• 🚸 Enable transfer artifacts from local instance to remote instance by @sunnyosun in #1479
• 📝 Refactor intro by @falexwolf in #1482
• 🚸 Disable delete data from non-default storage by @sunnyosun in #1484
• 🚸 Restore auto_connect=True on lamin init by @falexwolf in #1483

Full Changelog: 0.68.0...0.68.1

Release 0.68.0

What's Changed

• ♻️ Thread-safe multi-instance mode by @falexwolf in #1424
• 📌 Pin nbstripout for now by @Koncopd in #1429
• ⬆️ Upgrade anndata by @Koncopd in #1427
• ⬆️ Upgrade fsspec[s3,gs] by @Koncopd in #1426
• 🐛 Fix upload by @falexwolf in #1430
• 📝 Updated bionty landing page by @sunnyosun in #1433
• ♻️ Simplify transfer by @falexwolf in #1425
• ✏️ Fix a few minor doc issues by @Zethson in #1436
• A few doc improvements by @Zethson in #1438
• ✨ Unique validation values by @Zethson in #1440
• 🎨 Remove discussion points from key FAQ by @Zethson in #1441
• 🐛 Fix zarr saving for hosted instances by @Koncopd in #1445
• ♻️ Draft transform settings by @falexwolf in #1449
• ⚡️ A way to improve parallel sampling for Collection.mapped by @Koncopd in #1448
• 🎨 Decouple features from Artifact construction by @sunnyosun in #1434
• ⬆️ Update core submodule by @sunnyosun in #1453
• 🚸 Simplify features linking by @sunnyosun in #1455
• ⬆️ Update core submodule by @sunnyosun in #1459
• 🎨 Use var_field for AnnData by @sunnyosun in #1458
• 🔊 Raise warning instead of error for artifact construction from df an… by @sunnyosun in #1461
• ✨ Rework Collection.mapped by @Koncopd in #1460
• ♻️ Refactor features by @sunnyosun in #1463
• 🔥 Remove lamin track by @falexwolf in #1462
• 🚚 Rename .dev to .core by @falexwolf in #1464
• 🔈 Better logging for update version dialogue by @falexwolf in #1465
• 📝 Simplify intro by @sunnyosun in #1466
• 🐛 Fix lamin stage by @falexwolf in #1467
• ♻️ Pass access_token in artifact.save by @Koncopd in #1454
• ♻️ Add ability to pass through access_token by @falexwolf in #1468
• ⬆️ Released sub modules by @sunnyosun in #1469
• ⬆️ Update cli pinning by @sunnyosun in #1470

Full Changelog: 0.67.3...0.68.0

Release 0.67.3

What's Changed

• 🎨 Transfer collection.artifacts by @sunnyosun in #1405
• 🚸 Account for run not yet being saved by @falexwolf in #1404
• ♻️ Use folders instead of buckets for default storages by @falexwolf in #1413
• ♻️ Refactor storage settings by @falexwolf in #1414
• ✨ Add add_to_version_family by @sunnyosun in #1408
• ✨ Enable to use hosted storage on S3 by @falexwolf in #1416
• 🚚 Import bionty instead of lnschema-bionty by @sunnyosun in #1415
• 🏗️ Run lamindb in multi-instance mode by @falexwolf in #1417
• 🚸 Also show hidden artifacts in data lineage by @falexwolf in #1418
• ✨ Enable to change the default database by @falexwolf in #1419
• ⬆️ Release submodules by @sunnyosun in #1421
• 📝 Fix docs by @sunnyosun in #1422
• 🎨 Make Collection.save() ACID by @falexwolf in #1410
• ♻️ Use Click for CLI by @falexwolf in #1420
• 🐛 Cache anon state by @falexwolf in #1423

Full Changelog: 0.67.2...0.67.3

Release 0.67.2

What's Changed

• ✨ Enable staging notebooks & code using the CLI by @falexwolf in #1403

Full Changelog: 0.67.1...0.67.2

Release 0.67.1

What's Changed

• ✨ Load json and html files by @falexwolf in #1396
• 🚸 Init transform versions at 1 by @falexwolf in #1397
• 🚸 Disallow bulk-delete for Artifact, Transform & Collection by @falexwolf in #1398
• 🩹 Also amend run by @falexwolf in #1399
• ✏️ Fix lnschema-bionty uid encoding by @sunnyosun in #1400
• 🐛 Fix idempotency of collection.save() by @falexwolf in #1401
• 🚚 Rename Bionty to PublicOntology by @sunnyosun in #1402

Full Changelog: 0.67.0...0.67.1

Release 0.67.0

What's Changed

• 🚚 Rename .bionty to .public, .from_bionty to .from_public by @sunnyosun in #1394

Full Changelog: 0.66.1...0.67.0

Release 0.66.1

What's Changed

• 🎨 Not create organism records when calling .bionty() by @sunnyosun in #1391
• ♻️ Incorporate edge cases into inner and outer join in Collection.mapped by @Koncopd in #1392
• ✏️ Display df with warning by @sunnyosun in #1393
• 🐛 Fix id matching in view_lineage by @sunnyosun in #1395

Full Changelog: 0.66.0...0.66.1

Release 0.66.0

What's Changed

• 🚸 Add anonymous access (now works without login) by @falexwolf in #1386
• 📝 Re-write quickstart by @falexwolf in #1387
• 📝 Not set organism globally by @sunnyosun in #1388
• 🔊 Log joins in Collection.mapped by @Koncopd in #1389
• 🎨 Introduce ordered collections and simplify .mapped() by @falexwolf in #1390

Full Changelog: 0.65.1...0.66.0