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parameter tweaking for Dnase/ATAC-seq data #29

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ChangxuFan opened this issue May 10, 2022 · 1 comment
Open

parameter tweaking for Dnase/ATAC-seq data #29

ChangxuFan opened this issue May 10, 2022 · 1 comment

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@ChangxuFan
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Dear developers,

I wonder if there is documentation/example for training based on Dnase/ATAC-seq input? I would highly appreciate suggestions on parameter tweaking!!

It seems ATAC/Dnase are supported model architectures from these lines in train_and_validate:

    if model_arch_name == "BPNet_ATAC_DNase":
        model = get_model(
            tasks, bias_tasks, model_arch_params, bias_model_arch_params, 
            name_prefix="main")
    else:        
        model = get_model(tasks, model_arch_params, name_prefix="main")

Thanks!!

@DongzeHE
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Is there any update on this question?

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