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Integrate new batch generator that combines foreground and background loci #19

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zahoorz opened this issue Jan 11, 2022 · 0 comments
Open

Integrate new batch generator that combines foreground and background loci #19

zahoorz opened this issue Jan 11, 2022 · 0 comments
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enhancement New feature or request

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zahoorz commented Jan 11, 2022 •
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----- for the generator

  1. The input json will have new field for background loci
  2. The user will specify #samples for foreground and background (-1 for all)
  3. The background_only option will dictate whether the bed file in the background_loci field of the input json will have weight as zero or one for mnll loss (e.g. in case of training background model the weight for background_loci will be 1)

---- for integration

  1. Add command line argument to pass background_only flag to the batch generator
@zahoorz zahoorz self-assigned this Jan 11, 2022
@zahoorz zahoorz changed the title Implement batch generator to combine foreground and background loci Integrate new batch generator that combines foreground and background loci Jan 13, 2022
@zahoorz zahoorz added the enhancement New feature or request label Jan 13, 2022
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